Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0213

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0212 and Psyr_0213 are separated by 312 nucleotidesPsyr_0213 and Psyr_0214 are separated by 21 nucleotidesPsyr_0214 and Psyr_0215 are separated by 69 nucleotides Psyr_0212: Psyr_0212 - Conserved hypothetical protein 255, at 226,239 to 227,102 _0212 Psyr_0213: Psyr_0213 - RNAse PH, at 227,415 to 228,137 _0213 Psyr_0214: Psyr_0214 - conserved hypothetical protein, at 228,159 to 228,527 _0214 Psyr_0215: Psyr_0215 - Exodeoxyribonuclease III xth, at 228,597 to 229,376 _0215 Position (kb) 227 228 229Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3 4at 227.110 kb on - strandat 227.196 kb on - strandat 227.272 kb on + strandat 227.344 kb on + strandat 227.345 kb on - strandat 227.345 kb on - strandat 227.345 kb on - strandat 227.373 kb on + strandat 227.373 kb on + strandat 227.373 kb on + strandat 227.373 kb on + strandat 227.374 kb on - strandat 227.375 kb on + strandat 227.376 kb on - strandat 227.376 kb on - strandat 227.401 kb on + strandat 227.401 kb on + strandat 227.408 kb on - strandat 227.475 kb on + strandat 227.475 kb on + strandat 227.476 kb on - strandat 227.500 kb on + strand, within Psyr_0213at 227.501 kb on - strand, within Psyr_0213at 227.519 kb on + strand, within Psyr_0213at 227.519 kb on + strand, within Psyr_0213at 227.519 kb on + strand, within Psyr_0213at 227.558 kb on - strand, within Psyr_0213at 227.624 kb on + strand, within Psyr_0213at 227.637 kb on - strand, within Psyr_0213at 227.675 kb on + strand, within Psyr_0213at 227.676 kb on - strand, within Psyr_0213at 227.676 kb on - strand, within Psyr_0213at 227.676 kb on - strand, within Psyr_0213at 227.676 kb on - strand, within Psyr_0213at 227.754 kb on + strand, within Psyr_0213at 227.754 kb on + strand, within Psyr_0213at 227.754 kb on + strand, within Psyr_0213at 227.754 kb on + strand, within Psyr_0213at 227.754 kb on + strand, within Psyr_0213at 227.755 kb on - strand, within Psyr_0213at 227.755 kb on - strand, within Psyr_0213at 227.755 kb on - strand, within Psyr_0213at 227.804 kb on + strand, within Psyr_0213at 227.805 kb on - strand, within Psyr_0213at 227.805 kb on - strand, within Psyr_0213at 227.805 kb on - strand, within Psyr_0213at 227.805 kb on - strand, within Psyr_0213at 227.805 kb on - strand, within Psyr_0213at 227.805 kb on - strand, within Psyr_0213at 227.805 kb on - strand, within Psyr_0213at 227.807 kb on + strand, within Psyr_0213at 227.919 kb on + strand, within Psyr_0213at 227.919 kb on + strand, within Psyr_0213at 227.919 kb on + strand, within Psyr_0213at 227.919 kb on + strand, within Psyr_0213at 227.920 kb on - strand, within Psyr_0213at 227.920 kb on - strand, within Psyr_0213at 227.920 kb on - strand, within Psyr_0213at 227.920 kb on - strand, within Psyr_0213at 227.920 kb on - strand, within Psyr_0213at 227.949 kb on + strand, within Psyr_0213at 227.950 kb on - strand, within Psyr_0213at 227.950 kb on - strand, within Psyr_0213at 228.284 kb on + strand, within Psyr_0214at 228.284 kb on + strand, within Psyr_0214at 228.470 kb on - strand, within Psyr_0214at 228.492 kb on + strandat 228.492 kb on + strandat 228.492 kb on + strandat 228.493 kb on - strandat 228.525 kb on + strandat 228.525 kb on + strandat 228.525 kb on + strandat 228.525 kb on + strandat 228.525 kb on + strandat 228.525 kb on + strandat 228.525 kb on + strandat 228.525 kb on + strandat 228.525 kb on + strandat 228.526 kb on - strandat 228.526 kb on - strandat 228.526 kb on - strandat 228.526 kb on - strandat 228.526 kb on - strandat 228.526 kb on - strandat 228.526 kb on - strandat 228.526 kb on - strandat 228.526 kb on - strandat 228.603 kb on - strandat 228.603 kb on - strandat 228.603 kb on - strandat 228.619 kb on + strandat 228.715 kb on + strand, within Psyr_0215at 228.716 kb on - strand, within Psyr_0215at 228.776 kb on - strand, within Psyr_0215at 228.776 kb on - strand, within Psyr_0215at 228.928 kb on + strand, within Psyr_0215at 228.928 kb on + strand, within Psyr_0215at 228.928 kb on + strand, within Psyr_0215at 228.928 kb on + strand, within Psyr_0215at 228.928 kb on + strand, within Psyr_0215at 228.928 kb on + strand, within Psyr_0215at 228.929 kb on - strand, within Psyr_0215at 228.929 kb on - strand, within Psyr_0215at 228.929 kb on - strand, within Psyr_0215at 228.929 kb on - strand, within Psyr_0215at 228.929 kb on - strand, within Psyr_0215at 228.929 kb on - strand, within Psyr_0215at 228.929 kb on - strand, within Psyr_0215at 228.943 kb on + strand, within Psyr_0215at 228.943 kb on + strand, within Psyr_0215at 228.943 kb on + strand, within Psyr_0215at 228.944 kb on - strand, within Psyr_0215at 228.944 kb on - strand, within Psyr_0215at 228.944 kb on - strand, within Psyr_0215at 228.944 kb on - strand, within Psyr_0215at 228.944 kb on - strand, within Psyr_0215at 228.949 kb on + strand, within Psyr_0215at 228.950 kb on - strand, within Psyr_0215at 228.950 kb on - strand, within Psyr_0215at 228.950 kb on - strand, within Psyr_0215at 228.950 kb on - strand, within Psyr_0215at 228.950 kb on - strand, within Psyr_0215at 228.950 kb on - strand, within Psyr_0215at 228.982 kb on + strand, within Psyr_0215at 228.982 kb on + strand, within Psyr_0215at 228.982 kb on + strand, within Psyr_0215at 228.982 kb on + strand, within Psyr_0215at 228.982 kb on + strand, within Psyr_0215at 228.982 kb on + strand, within Psyr_0215at 228.982 kb on + strand, within Psyr_0215at 228.982 kb on + strand, within Psyr_0215at 228.982 kb on + strand, within Psyr_0215at 228.982 kb on + strand, within Psyr_0215at 228.982 kb on + strand, within Psyr_0215at 228.983 kb on - strand, within Psyr_0215at 228.983 kb on - strand, within Psyr_0215at 228.983 kb on - strand, within Psyr_0215at 228.983 kb on - strand, within Psyr_0215at 228.983 kb on - strand, within Psyr_0215

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
remove
227,110 - +0.2
227,196 - +0.9
227,272 + +4.0
227,344 + -1.3
227,345 - -0.8
227,345 - +0.2
227,345 - +0.9
227,373 + +2.7
227,373 + +0.5
227,373 + -0.3
227,373 + -0.4
227,374 - -1.2
227,375 + -0.5
227,376 - +4.3
227,376 - -1.8
227,401 + -0.7
227,401 + -1.0
227,408 - +0.2
227,475 + +0.4
227,475 + -0.3
227,476 - -1.2
227,500 + Psyr_0213 0.12 +0.2
227,501 - Psyr_0213 0.12 +0.3
227,519 + Psyr_0213 0.14 +4.2
227,519 + Psyr_0213 0.14 -0.6
227,519 + Psyr_0213 0.14 +0.1
227,558 - Psyr_0213 0.20 +2.7
227,624 + Psyr_0213 0.29 +0.5
227,637 - Psyr_0213 0.31 +3.9
227,675 + Psyr_0213 0.36 +0.7
227,676 - Psyr_0213 0.36 -3.5
227,676 - Psyr_0213 0.36 +1.5
227,676 - Psyr_0213 0.36 -1.5
227,676 - Psyr_0213 0.36 -1.7
227,754 + Psyr_0213 0.47 +0.2
227,754 + Psyr_0213 0.47 +0.2
227,754 + Psyr_0213 0.47 +3.3
227,754 + Psyr_0213 0.47 +4.0
227,754 + Psyr_0213 0.47 +1.7
227,755 - Psyr_0213 0.47 -1.0
227,755 - Psyr_0213 0.47 +3.3
227,755 - Psyr_0213 0.47 +2.7
227,804 + Psyr_0213 0.54 +0.7
227,805 - Psyr_0213 0.54 +3.2
227,805 - Psyr_0213 0.54 -0.5
227,805 - Psyr_0213 0.54 +0.1
227,805 - Psyr_0213 0.54 +1.0
227,805 - Psyr_0213 0.54 +2.7
227,805 - Psyr_0213 0.54 -0.8
227,805 - Psyr_0213 0.54 +1.5
227,807 + Psyr_0213 0.54 +3.2
227,919 + Psyr_0213 0.70 -0.5
227,919 + Psyr_0213 0.70 -0.4
227,919 + Psyr_0213 0.70 +0.7
227,919 + Psyr_0213 0.70 +1.4
227,920 - Psyr_0213 0.70 +3.2
227,920 - Psyr_0213 0.70 +3.5
227,920 - Psyr_0213 0.70 +3.2
227,920 - Psyr_0213 0.70 -2.1
227,920 - Psyr_0213 0.70 -1.2
227,949 + Psyr_0213 0.74 +0.9
227,950 - Psyr_0213 0.74 +2.4
227,950 - Psyr_0213 0.74 +1.3
228,284 + Psyr_0214 0.34 -1.1
228,284 + Psyr_0214 0.34 +2.5
228,470 - Psyr_0214 0.84 +3.6
228,492 + +0.5
228,492 + -0.9
228,492 + -0.7
228,493 - -0.4
228,525 + -1.3
228,525 + -1.5
228,525 + -1.1
228,525 + +3.0
228,525 + -2.4
228,525 + +0.2
228,525 + +0.2
228,525 + +0.5
228,525 + +2.5
228,526 - +2.5
228,526 - -0.1
228,526 - -1.0
228,526 - +2.7
228,526 - -0.6
228,526 - -0.6
228,526 - +0.7
228,526 - +0.3
228,526 - -1.1
228,603 - +0.2
228,603 - -4.9
228,603 - -4.2
228,619 + -5.3
228,715 + Psyr_0215 0.15 +0.2
228,716 - Psyr_0215 0.15 +0.2
228,776 - Psyr_0215 0.23 -3.3
228,776 - Psyr_0215 0.23 +0.2
228,928 + Psyr_0215 0.42 -1.7
228,928 + Psyr_0215 0.42 +0.2
228,928 + Psyr_0215 0.42 +1.2
228,928 + Psyr_0215 0.42 -2.4
228,928 + Psyr_0215 0.42 -3.4
228,928 + Psyr_0215 0.42 -3.6
228,929 - Psyr_0215 0.43 -0.2
228,929 - Psyr_0215 0.43 -4.6
228,929 - Psyr_0215 0.43 -4.8
228,929 - Psyr_0215 0.43 -1.2
228,929 - Psyr_0215 0.43 -4.1
228,929 - Psyr_0215 0.43 +1.2
228,929 - Psyr_0215 0.43 -3.8
228,943 + Psyr_0215 0.44 -5.3
228,943 + Psyr_0215 0.44 +0.2
228,943 + Psyr_0215 0.44 -1.8
228,944 - Psyr_0215 0.44 -3.3
228,944 - Psyr_0215 0.44 +0.2
228,944 - Psyr_0215 0.44 -4.8
228,944 - Psyr_0215 0.44 -6.0
228,944 - Psyr_0215 0.44 +0.2
228,949 + Psyr_0215 0.45 -3.1
228,950 - Psyr_0215 0.45 -4.1
228,950 - Psyr_0215 0.45 -3.5
228,950 - Psyr_0215 0.45 -3.4
228,950 - Psyr_0215 0.45 -3.4
228,950 - Psyr_0215 0.45 +0.2
228,950 - Psyr_0215 0.45 -5.7
228,982 + Psyr_0215 0.49 -2.8
228,982 + Psyr_0215 0.49 +0.2
228,982 + Psyr_0215 0.49 +0.2
228,982 + Psyr_0215 0.49 -4.1
228,982 + Psyr_0215 0.49 -2.1
228,982 + Psyr_0215 0.49 -4.7
228,982 + Psyr_0215 0.49 -4.9
228,982 + Psyr_0215 0.49 -2.6
228,982 + Psyr_0215 0.49 -4.2
228,982 + Psyr_0215 0.49 -4.2
228,982 + Psyr_0215 0.49 +2.2
228,983 - Psyr_0215 0.49 -1.7
228,983 - Psyr_0215 0.49 +0.2
228,983 - Psyr_0215 0.49 -2.8
228,983 - Psyr_0215 0.49 -3.8
228,983 - Psyr_0215 0.49 -3.3

Or see this region's nucleotide sequence