Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0150 and Psyr_0151 overlap by 4 nucleotides Psyr_0151 and Psyr_0152 overlap by 4 nucleotides
Psyr_0150: Psyr_0150 - Acetylornithine deacetylase (ArgE), at 162,761 to 163,918
_0150
Psyr_0151: Psyr_0151 - FAD dependent oxidoreductase, at 163,915 to 165,084
_0151
Psyr_0152: Psyr_0152 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase:BFD-like [2Fe-2S]-binding region, at 165,081 to 166,490
_0152
Position (kb) 163
164
165
166 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 162.927 kb on + strand, within Psyr_0150 at 162.928 kb on - strand, within Psyr_0150 at 162.928 kb on - strand, within Psyr_0150 at 163.076 kb on + strand, within Psyr_0150 at 163.076 kb on + strand, within Psyr_0150 at 163.077 kb on - strand, within Psyr_0150 at 163.217 kb on + strand, within Psyr_0150 at 163.218 kb on - strand, within Psyr_0150 at 163.218 kb on - strand, within Psyr_0150 at 163.218 kb on - strand, within Psyr_0150 at 163.218 kb on - strand, within Psyr_0150 at 163.227 kb on + strand, within Psyr_0150 at 163.227 kb on + strand, within Psyr_0150 at 163.227 kb on + strand, within Psyr_0150 at 163.457 kb on + strand, within Psyr_0150 at 163.458 kb on - strand, within Psyr_0150 at 163.458 kb on - strand, within Psyr_0150 at 163.629 kb on + strand, within Psyr_0150 at 163.629 kb on + strand, within Psyr_0150 at 163.630 kb on - strand, within Psyr_0150 at 163.630 kb on - strand, within Psyr_0150 at 163.630 kb on - strand, within Psyr_0150 at 163.630 kb on - strand, within Psyr_0150 at 163.833 kb on + strand at 163.834 kb on - strand at 163.834 kb on - strand at 163.926 kb on + strand at 163.927 kb on - strand at 164.087 kb on + strand, within Psyr_0151 at 164.087 kb on + strand, within Psyr_0151 at 164.087 kb on + strand, within Psyr_0151 at 164.087 kb on + strand, within Psyr_0151 at 164.088 kb on - strand, within Psyr_0151 at 164.088 kb on - strand, within Psyr_0151 at 164.088 kb on - strand, within Psyr_0151 at 164.088 kb on - strand, within Psyr_0151 at 164.088 kb on - strand, within Psyr_0151 at 164.088 kb on - strand, within Psyr_0151 at 164.088 kb on - strand, within Psyr_0151 at 164.250 kb on - strand, within Psyr_0151 at 164.330 kb on + strand, within Psyr_0151 at 164.330 kb on + strand, within Psyr_0151 at 164.330 kb on + strand, within Psyr_0151 at 164.330 kb on + strand, within Psyr_0151 at 164.331 kb on - strand, within Psyr_0151 at 164.666 kb on + strand, within Psyr_0151 at 164.667 kb on - strand, within Psyr_0151 at 164.729 kb on + strand, within Psyr_0151 at 164.729 kb on + strand, within Psyr_0151 at 164.729 kb on + strand, within Psyr_0151 at 164.729 kb on + strand, within Psyr_0151 at 164.729 kb on + strand, within Psyr_0151 at 164.729 kb on + strand, within Psyr_0151 at 164.730 kb on - strand, within Psyr_0151 at 164.771 kb on + strand, within Psyr_0151 at 164.771 kb on + strand, within Psyr_0151 at 164.772 kb on - strand, within Psyr_0151 at 164.772 kb on - strand, within Psyr_0151 at 164.772 kb on - strand, within Psyr_0151 at 164.772 kb on - strand, within Psyr_0151 at 165.058 kb on + strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.059 kb on - strand at 165.059 kb on - strand at 165.059 kb on - strand at 165.059 kb on - strand at 165.059 kb on - strand at 165.059 kb on - strand at 165.059 kb on - strand at 165.059 kb on - strand at 165.059 kb on - strand at 165.061 kb on + strand at 165.061 kb on + strand at 165.061 kb on + strand at 165.061 kb on + strand at 165.061 kb on + strand at 165.061 kb on + strand at 165.061 kb on + strand at 165.061 kb on + strand at 165.062 kb on - strand at 165.062 kb on - strand at 165.062 kb on - strand at 165.062 kb on - strand at 165.062 kb on - strand at 165.453 kb on - strand, within Psyr_0152 at 165.575 kb on + strand, within Psyr_0152 at 165.575 kb on + strand, within Psyr_0152 at 165.575 kb on + strand, within Psyr_0152 at 165.576 kb on - strand, within Psyr_0152 at 165.576 kb on - strand, within Psyr_0152 at 165.576 kb on - strand, within Psyr_0152 at 165.630 kb on + strand, within Psyr_0152 at 165.631 kb on - strand, within Psyr_0152 at 165.820 kb on + strand, within Psyr_0152 at 165.820 kb on + strand, within Psyr_0152 at 165.821 kb on - strand, within Psyr_0152 at 165.821 kb on - strand, within Psyr_0152 at 165.821 kb on - strand, within Psyr_0152 at 165.821 kb on - strand, within Psyr_0152 at 165.821 kb on - strand, within Psyr_0152 at 165.821 kb on - strand, within Psyr_0152 at 165.952 kb on + strand, within Psyr_0152 at 165.953 kb on - strand, within Psyr_0152 at 165.970 kb on + strand, within Psyr_0152 at 165.970 kb on + strand, within Psyr_0152 at 165.970 kb on + strand, within Psyr_0152 at 165.970 kb on + strand, within Psyr_0152 at 165.971 kb on - strand, within Psyr_0152 at 166.060 kb on + strand, within Psyr_0152 at 166.060 kb on + strand, within Psyr_0152 at 166.061 kb on - strand, within Psyr_0152 at 166.061 kb on - strand, within Psyr_0152 at 166.061 kb on - strand, within Psyr_0152 at 166.061 kb on - strand, within Psyr_0152
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 162,927 + Psyr_0150 0.14 +4.8 162,928 - Psyr_0150 0.14 +1.2 162,928 - Psyr_0150 0.14 +2.7 163,076 + Psyr_0150 0.27 -2.1 163,076 + Psyr_0150 0.27 +3.7 163,077 - Psyr_0150 0.27 -0.5 163,217 + Psyr_0150 0.39 -1.6 163,218 - Psyr_0150 0.39 +3.3 163,218 - Psyr_0150 0.39 +3.0 163,218 - Psyr_0150 0.39 -0.7 163,218 - Psyr_0150 0.39 -1.2 163,227 + Psyr_0150 0.40 -1.6 163,227 + Psyr_0150 0.40 +0.9 163,227 + Psyr_0150 0.40 +2.7 163,457 + Psyr_0150 0.60 -0.0 163,458 - Psyr_0150 0.60 +0.2 163,458 - Psyr_0150 0.60 +0.3 163,629 + Psyr_0150 0.75 -0.3 163,629 + Psyr_0150 0.75 +0.2 163,630 - Psyr_0150 0.75 -0.8 163,630 - Psyr_0150 0.75 -0.7 163,630 - Psyr_0150 0.75 +2.7 163,630 - Psyr_0150 0.75 -1.0 163,833 + -1.2 163,834 - +2.0 163,834 - -1.0 163,926 + -2.8 163,927 - +3.2 164,087 + Psyr_0151 0.15 -0.9 164,087 + Psyr_0151 0.15 +0.0 164,087 + Psyr_0151 0.15 -0.1 164,087 + Psyr_0151 0.15 +2.2 164,088 - Psyr_0151 0.15 -1.4 164,088 - Psyr_0151 0.15 -2.2 164,088 - Psyr_0151 0.15 -1.4 164,088 - Psyr_0151 0.15 -0.3 164,088 - Psyr_0151 0.15 -0.1 164,088 - Psyr_0151 0.15 +0.8 164,088 - Psyr_0151 0.15 +2.2 164,250 - Psyr_0151 0.29 +2.7 164,330 + Psyr_0151 0.35 -0.5 164,330 + Psyr_0151 0.35 +2.7 164,330 + Psyr_0151 0.35 -0.4 164,330 + Psyr_0151 0.35 +0.7 164,331 - Psyr_0151 0.36 -0.8 164,666 + Psyr_0151 0.64 +2.7 164,667 - Psyr_0151 0.64 -0.5 164,729 + Psyr_0151 0.70 -0.6 164,729 + Psyr_0151 0.70 +4.5 164,729 + Psyr_0151 0.70 +0.9 164,729 + Psyr_0151 0.70 -1.5 164,729 + Psyr_0151 0.70 +0.1 164,729 + Psyr_0151 0.70 +3.0 164,730 - Psyr_0151 0.70 +3.0 164,771 + Psyr_0151 0.73 -3.4 164,771 + Psyr_0151 0.73 -2.3 164,772 - Psyr_0151 0.73 +3.6 164,772 - Psyr_0151 0.73 +0.3 164,772 - Psyr_0151 0.73 -0.6 164,772 - Psyr_0151 0.73 +1.1 165,058 + -0.8 165,058 + -0.5 165,058 + -1.1 165,058 + +0.0 165,058 + +0.3 165,058 + -2.0 165,058 + -0.3 165,058 + -1.5 165,058 + -0.2 165,058 + +3.7 165,058 + -0.5 165,059 - +2.5 165,059 - -1.1 165,059 - -3.1 165,059 - +0.7 165,059 - -1.5 165,059 - -1.1 165,059 - -0.7 165,059 - +1.9 165,059 - +1.2 165,061 + -1.6 165,061 + -0.5 165,061 + +3.3 165,061 + +1.7 165,061 + +3.6 165,061 + -1.5 165,061 + -2.3 165,061 + +2.2 165,062 - +4.0 165,062 - -0.6 165,062 - +0.2 165,062 - +0.2 165,062 - +0.2 165,453 - Psyr_0152 0.26 -2.2 165,575 + Psyr_0152 0.35 +3.0 165,575 + Psyr_0152 0.35 +0.2 165,575 + Psyr_0152 0.35 +3.3 165,576 - Psyr_0152 0.35 +1.2 165,576 - Psyr_0152 0.35 +0.5 165,576 - Psyr_0152 0.35 +1.2 165,630 + Psyr_0152 0.39 +2.5 165,631 - Psyr_0152 0.39 +0.0 165,820 + Psyr_0152 0.52 +0.7 165,820 + Psyr_0152 0.52 +2.5 165,821 - Psyr_0152 0.52 +4.1 165,821 - Psyr_0152 0.52 +0.3 165,821 - Psyr_0152 0.52 +3.6 165,821 - Psyr_0152 0.52 -0.4 165,821 - Psyr_0152 0.52 -1.5 165,821 - Psyr_0152 0.52 +2.5 165,952 + Psyr_0152 0.62 -0.2 165,953 - Psyr_0152 0.62 +0.3 165,970 + Psyr_0152 0.63 -0.8 165,970 + Psyr_0152 0.63 -2.7 165,970 + Psyr_0152 0.63 +0.3 165,970 + Psyr_0152 0.63 -3.8 165,971 - Psyr_0152 0.63 -1.0 166,060 + Psyr_0152 0.69 +2.2 166,060 + Psyr_0152 0.69 +0.1 166,061 - Psyr_0152 0.70 -2.0 166,061 - Psyr_0152 0.70 -0.3 166,061 - Psyr_0152 0.70 +0.2 166,061 - Psyr_0152 0.70 +0.7
Or see this region's nucleotide sequence