Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0068

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0067 and Psyr_0068 are separated by 96 nucleotidesPsyr_0068 and Psyr_0069 are separated by 57 nucleotides Psyr_0067: Psyr_0067 - membrane protein, putative, at 67,651 to 68,844 _0067 Psyr_0068: Psyr_0068 - Insulinase-like:Peptidase M16, C-terminal, at 68,941 to 70,317 _0068 Psyr_0069: Psyr_0069 - Na+/Pi-cotransporter:Na/Pi cotransporter II-related protein, at 70,375 to 72,027 _0069 Position (kb) 68 69 70 71Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 68.024 kb on + strand, within Psyr_0067at 68.024 kb on + strand, within Psyr_0067at 68.024 kb on + strand, within Psyr_0067at 68.024 kb on + strand, within Psyr_0067at 68.024 kb on + strand, within Psyr_0067at 68.024 kb on + strand, within Psyr_0067at 68.025 kb on - strand, within Psyr_0067at 68.025 kb on - strand, within Psyr_0067at 68.025 kb on - strand, within Psyr_0067at 68.025 kb on - strand, within Psyr_0067at 68.025 kb on - strand, within Psyr_0067at 68.025 kb on - strand, within Psyr_0067at 68.025 kb on - strand, within Psyr_0067at 68.025 kb on - strand, within Psyr_0067at 68.025 kb on - strand, within Psyr_0067at 68.025 kb on - strand, within Psyr_0067at 68.025 kb on - strand, within Psyr_0067at 68.028 kb on + strand, within Psyr_0067at 68.028 kb on + strand, within Psyr_0067at 68.028 kb on + strand, within Psyr_0067at 68.028 kb on + strand, within Psyr_0067at 68.028 kb on + strand, within Psyr_0067at 68.028 kb on + strand, within Psyr_0067at 68.028 kb on + strand, within Psyr_0067at 68.029 kb on - strand, within Psyr_0067at 68.029 kb on - strand, within Psyr_0067at 68.029 kb on - strand, within Psyr_0067at 68.066 kb on + strand, within Psyr_0067at 68.066 kb on + strand, within Psyr_0067at 68.067 kb on - strand, within Psyr_0067at 68.072 kb on + strand, within Psyr_0067at 68.072 kb on + strand, within Psyr_0067at 68.072 kb on + strand, within Psyr_0067at 68.073 kb on - strand, within Psyr_0067at 68.073 kb on - strand, within Psyr_0067at 68.115 kb on + strand, within Psyr_0067at 68.115 kb on + strand, within Psyr_0067at 68.116 kb on - strand, within Psyr_0067at 68.116 kb on - strand, within Psyr_0067at 68.311 kb on + strand, within Psyr_0067at 68.312 kb on - strand, within Psyr_0067at 68.339 kb on + strand, within Psyr_0067at 68.339 kb on + strand, within Psyr_0067at 68.340 kb on - strand, within Psyr_0067at 68.453 kb on + strand, within Psyr_0067at 68.453 kb on + strand, within Psyr_0067at 68.453 kb on + strand, within Psyr_0067at 68.453 kb on + strand, within Psyr_0067at 68.454 kb on - strand, within Psyr_0067at 68.454 kb on - strand, within Psyr_0067at 68.454 kb on - strand, within Psyr_0067at 68.454 kb on - strand, within Psyr_0067at 68.456 kb on + strand, within Psyr_0067at 68.456 kb on + strand, within Psyr_0067at 68.456 kb on + strand, within Psyr_0067at 68.456 kb on + strand, within Psyr_0067at 68.456 kb on + strand, within Psyr_0067at 68.457 kb on - strand, within Psyr_0067at 68.457 kb on - strand, within Psyr_0067at 68.457 kb on - strand, within Psyr_0067at 68.825 kb on + strandat 68.825 kb on + strandat 68.825 kb on + strandat 68.826 kb on - strandat 68.870 kb on + strandat 68.870 kb on + strandat 68.871 kb on - strandat 68.942 kb on + strandat 68.942 kb on + strandat 68.942 kb on + strandat 68.942 kb on + strandat 68.942 kb on + strandat 68.942 kb on + strandat 68.942 kb on + strandat 68.942 kb on + strandat 68.943 kb on - strandat 68.943 kb on - strandat 68.943 kb on - strandat 68.943 kb on - strandat 68.943 kb on - strandat 68.943 kb on - strandat 68.943 kb on - strandat 68.943 kb on - strandat 68.943 kb on - strandat 68.943 kb on - strandat 68.943 kb on - strandat 68.943 kb on - strandat 68.954 kb on - strandat 69.014 kb on + strandat 69.056 kb on + strandat 69.056 kb on + strandat 69.057 kb on - strandat 69.057 kb on - strandat 69.155 kb on + strand, within Psyr_0068at 69.176 kb on + strand, within Psyr_0068at 69.176 kb on + strand, within Psyr_0068at 69.176 kb on + strand, within Psyr_0068at 69.177 kb on - strand, within Psyr_0068at 69.177 kb on - strand, within Psyr_0068at 69.177 kb on - strand, within Psyr_0068at 69.179 kb on + strand, within Psyr_0068at 69.180 kb on - strand, within Psyr_0068at 69.180 kb on - strand, within Psyr_0068at 69.180 kb on - strand, within Psyr_0068at 69.207 kb on + strand, within Psyr_0068at 69.208 kb on - strand, within Psyr_0068at 69.208 kb on - strand, within Psyr_0068at 69.255 kb on + strand, within Psyr_0068at 69.255 kb on + strand, within Psyr_0068at 69.434 kb on + strand, within Psyr_0068at 69.435 kb on - strand, within Psyr_0068at 69.435 kb on - strand, within Psyr_0068at 69.435 kb on - strand, within Psyr_0068at 69.636 kb on - strand, within Psyr_0068at 69.650 kb on + strand, within Psyr_0068at 69.650 kb on + strand, within Psyr_0068at 70.050 kb on + strand, within Psyr_0068at 70.050 kb on + strand, within Psyr_0068at 70.050 kb on + strand, within Psyr_0068at 70.051 kb on - strand, within Psyr_0068at 70.051 kb on - strand, within Psyr_0068at 70.051 kb on - strand, within Psyr_0068at 70.238 kb on + strandat 70.317 kb on + strandat 70.370 kb on + strandat 70.370 kb on + strandat 70.371 kb on - strandat 70.371 kb on - strandat 70.371 kb on - strandat 70.443 kb on - strandat 70.443 kb on - strandat 70.443 kb on - strandat 70.518 kb on + strandat 70.606 kb on + strand, within Psyr_0069at 70.606 kb on + strand, within Psyr_0069at 70.606 kb on + strand, within Psyr_0069at 70.606 kb on + strand, within Psyr_0069at 70.607 kb on - strand, within Psyr_0069at 70.672 kb on + strand, within Psyr_0069at 70.672 kb on + strand, within Psyr_0069at 70.673 kb on - strand, within Psyr_0069at 70.673 kb on - strand, within Psyr_0069at 70.673 kb on - strand, within Psyr_0069at 70.673 kb on - strand, within Psyr_0069at 70.673 kb on - strand, within Psyr_0069at 70.874 kb on + strand, within Psyr_0069at 70.892 kb on + strand, within Psyr_0069at 70.892 kb on + strand, within Psyr_0069at 70.892 kb on + strand, within Psyr_0069at 70.893 kb on - strand, within Psyr_0069at 70.893 kb on - strand, within Psyr_0069at 71.004 kb on + strand, within Psyr_0069at 71.121 kb on - strand, within Psyr_0069at 71.121 kb on - strand, within Psyr_0069at 71.173 kb on + strand, within Psyr_0069at 71.174 kb on - strand, within Psyr_0069at 71.183 kb on + strand, within Psyr_0069at 71.183 kb on + strand, within Psyr_0069at 71.184 kb on - strand, within Psyr_0069at 71.184 kb on - strand, within Psyr_0069at 71.184 kb on - strand, within Psyr_0069at 71.184 kb on - strand, within Psyr_0069at 71.294 kb on + strand, within Psyr_0069at 71.294 kb on + strand, within Psyr_0069at 71.294 kb on + strand, within Psyr_0069at 71.294 kb on + strand, within Psyr_0069at 71.294 kb on + strand, within Psyr_0069at 71.295 kb on - strand, within Psyr_0069

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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68,024 + Psyr_0067 0.31 +3.1
68,024 + Psyr_0067 0.31 -0.4
68,024 + Psyr_0067 0.31 -1.6
68,024 + Psyr_0067 0.31 +2.7
68,024 + Psyr_0067 0.31 +2.5
68,024 + Psyr_0067 0.31 +0.6
68,025 - Psyr_0067 0.31 -0.5
68,025 - Psyr_0067 0.31 -0.8
68,025 - Psyr_0067 0.31 +1.6
68,025 - Psyr_0067 0.31 +0.9
68,025 - Psyr_0067 0.31 -1.5
68,025 - Psyr_0067 0.31 -1.0
68,025 - Psyr_0067 0.31 +1.2
68,025 - Psyr_0067 0.31 -1.1
68,025 - Psyr_0067 0.31 -0.4
68,025 - Psyr_0067 0.31 -0.7
68,025 - Psyr_0067 0.31 +1.2
68,028 + Psyr_0067 0.32 +0.5
68,028 + Psyr_0067 0.32 -0.1
68,028 + Psyr_0067 0.32 -0.8
68,028 + Psyr_0067 0.32 -0.4
68,028 + Psyr_0067 0.32 -0.6
68,028 + Psyr_0067 0.32 -4.5
68,028 + Psyr_0067 0.32 -0.7
68,029 - Psyr_0067 0.32 -2.1
68,029 - Psyr_0067 0.32 -0.8
68,029 - Psyr_0067 0.32 +0.3
68,066 + Psyr_0067 0.35 +3.9
68,066 + Psyr_0067 0.35 -0.3
68,067 - Psyr_0067 0.35 +2.2
68,072 + Psyr_0067 0.35 +1.7
68,072 + Psyr_0067 0.35 -0.5
68,072 + Psyr_0067 0.35 +2.2
68,073 - Psyr_0067 0.35 +2.2
68,073 - Psyr_0067 0.35 +2.7
68,115 + Psyr_0067 0.39 -0.4
68,115 + Psyr_0067 0.39 -1.5
68,116 - Psyr_0067 0.39 +3.2
68,116 - Psyr_0067 0.39 +2.5
68,311 + Psyr_0067 0.55 +0.4
68,312 - Psyr_0067 0.55 +2.4
68,339 + Psyr_0067 0.58 +0.3
68,339 + Psyr_0067 0.58 -0.1
68,340 - Psyr_0067 0.58 -0.8
68,453 + Psyr_0067 0.67 -1.6
68,453 + Psyr_0067 0.67 -0.1
68,453 + Psyr_0067 0.67 +3.6
68,453 + Psyr_0067 0.67 +1.8
68,454 - Psyr_0067 0.67 -0.7
68,454 - Psyr_0067 0.67 +0.4
68,454 - Psyr_0067 0.67 +3.0
68,454 - Psyr_0067 0.67 -1.6
68,456 + Psyr_0067 0.67 -1.0
68,456 + Psyr_0067 0.67 +5.1
68,456 + Psyr_0067 0.67 -2.5
68,456 + Psyr_0067 0.67 -0.3
68,456 + Psyr_0067 0.67 -1.1
68,457 - Psyr_0067 0.68 +3.5
68,457 - Psyr_0067 0.68 -1.3
68,457 - Psyr_0067 0.68 +0.8
68,825 + -0.5
68,825 + -1.1
68,825 + +0.6
68,826 - -1.8
68,870 + -0.2
68,870 + +2.2
68,871 - +2.5
68,942 + +0.2
68,942 + -1.9
68,942 + +0.2
68,942 + +0.5
68,942 + +2.2
68,942 + +0.7
68,942 + +3.5
68,942 + -1.7
68,943 - +0.2
68,943 - -0.7
68,943 - +3.5
68,943 - +5.4
68,943 - -0.4
68,943 - +3.3
68,943 - +0.1
68,943 - +3.2
68,943 - +0.8
68,943 - +2.5
68,943 - +0.2
68,943 - +0.3
68,954 - +1.2
69,014 + -0.7
69,056 + -1.2
69,056 + +2.2
69,057 - +1.1
69,057 - +1.2
69,155 + Psyr_0068 0.16 +3.2
69,176 + Psyr_0068 0.17 +1.7
69,176 + Psyr_0068 0.17 +2.1
69,176 + Psyr_0068 0.17 +2.5
69,177 - Psyr_0068 0.17 -3.8
69,177 - Psyr_0068 0.17 -0.3
69,177 - Psyr_0068 0.17 +3.2
69,179 + Psyr_0068 0.17 -1.1
69,180 - Psyr_0068 0.17 +2.5
69,180 - Psyr_0068 0.17 -0.2
69,180 - Psyr_0068 0.17 +4.7
69,207 + Psyr_0068 0.19 +3.0
69,208 - Psyr_0068 0.19 +1.7
69,208 - Psyr_0068 0.19 +0.3
69,255 + Psyr_0068 0.23 +2.0
69,255 + Psyr_0068 0.23 +0.2
69,434 + Psyr_0068 0.36 +4.0
69,435 - Psyr_0068 0.36 +3.2
69,435 - Psyr_0068 0.36 -1.3
69,435 - Psyr_0068 0.36 -2.7
69,636 - Psyr_0068 0.50 -1.8
69,650 + Psyr_0068 0.51 +2.7
69,650 + Psyr_0068 0.51 +2.5
70,050 + Psyr_0068 0.81 -0.7
70,050 + Psyr_0068 0.81 -1.4
70,050 + Psyr_0068 0.81 +0.2
70,051 - Psyr_0068 0.81 -1.4
70,051 - Psyr_0068 0.81 -2.0
70,051 - Psyr_0068 0.81 +3.6
70,238 + -0.5
70,317 + -0.5
70,370 + +0.1
70,370 + -0.3
70,371 - -1.2
70,371 - +4.0
70,371 - -1.0
70,443 - -0.8
70,443 - +1.7
70,443 - +5.0
70,518 + +0.4
70,606 + Psyr_0069 0.14 +0.0
70,606 + Psyr_0069 0.14 -1.0
70,606 + Psyr_0069 0.14 -0.8
70,606 + Psyr_0069 0.14 -0.6
70,607 - Psyr_0069 0.14 +3.3
70,672 + Psyr_0069 0.18 +4.6
70,672 + Psyr_0069 0.18 +1.2
70,673 - Psyr_0069 0.18 +4.4
70,673 - Psyr_0069 0.18 +5.2
70,673 - Psyr_0069 0.18 +2.7
70,673 - Psyr_0069 0.18 +1.6
70,673 - Psyr_0069 0.18 +0.5
70,874 + Psyr_0069 0.30 +0.1
70,892 + Psyr_0069 0.31 -0.4
70,892 + Psyr_0069 0.31 +3.6
70,892 + Psyr_0069 0.31 +2.7
70,893 - Psyr_0069 0.31 -1.1
70,893 - Psyr_0069 0.31 +4.0
71,004 + Psyr_0069 0.38 -1.2
71,121 - Psyr_0069 0.45 +1.7
71,121 - Psyr_0069 0.45 -2.6
71,173 + Psyr_0069 0.48 -1.5
71,174 - Psyr_0069 0.48 +0.6
71,183 + Psyr_0069 0.49 -0.6
71,183 + Psyr_0069 0.49 -1.1
71,184 - Psyr_0069 0.49 -0.8
71,184 - Psyr_0069 0.49 -3.0
71,184 - Psyr_0069 0.49 +0.7
71,184 - Psyr_0069 0.49 -0.8
71,294 + Psyr_0069 0.56 -0.6
71,294 + Psyr_0069 0.56 +1.2
71,294 + Psyr_0069 0.56 +2.7
71,294 + Psyr_0069 0.56 -0.6
71,294 + Psyr_0069 0.56 -0.6
71,295 - Psyr_0069 0.56 -2.3

Or see this region's nucleotide sequence