Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_936

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
1,063,338	+		Pf1N1B4_935	0.84	-1.3
1,063,338	+		Pf1N1B4_935	0.84	+0.2
1,063,338	+		Pf1N1B4_935	0.84	-0.3
1,063,338	+		Pf1N1B4_935	0.84	+1.1
1,063,339	-		Pf1N1B4_935	0.84	+0.3
1,063,339	-		Pf1N1B4_935	0.84	-0.3
1,063,339	-		Pf1N1B4_935	0.84	+1.1
1,063,339	-		Pf1N1B4_935	0.84	+0.9
1,063,339	-		Pf1N1B4_935	0.84	+0.9
1,063,339	-		Pf1N1B4_935	0.84	-0.5
1,063,339	-		Pf1N1B4_935	0.84	-0.1
1,063,359	+		Pf1N1B4_935	0.85	+0.6
1,063,359	+		Pf1N1B4_935	0.85	-1.2
1,063,359	+		Pf1N1B4_935	0.85	+0.8
1,063,359	+		Pf1N1B4_935	0.85	-0.1
1,063,359	+		Pf1N1B4_935	0.85	-0.6
1,063,360	-		Pf1N1B4_935	0.85	-1.9
1,063,578	+				-0.7
1,063,579	-				-1.1
1,063,579	-				-1.0
1,063,579	-				+1.3
1,063,589	+				+1.6
1,063,589	+				-1.7
1,063,589	+				-1.0
1,063,590	-				+1.3
1,063,590	-				+1.3
1,063,590	-				+0.8
1,063,759	+				-0.2
1,063,760	-				-0.0
1,063,760	-				-1.1
1,063,761	+				+0.4
1,063,761	+				+0.6
1,063,761	+				-0.5
1,063,761	+				-1.5
1,063,761	+				+0.5
1,063,761	+				-0.0
1,063,761	+				-1.9
1,063,761	+				+0.0
1,063,761	+				-1.0
1,063,761	+				+3.2
1,063,761	+				+0.7
1,063,762	-				-0.5
1,063,762	-				-0.3
1,063,762	-				+0.7
1,063,762	-				-0.7
1,063,762	-				-0.5
1,063,762	-				-2.2
1,063,762	-				-1.7
1,063,762	-				+0.9
1,063,762	-				+1.8
1,063,762	-				+0.1
1,063,762	-				+0.1
1,063,794	-				+1.0
1,063,900	+				+0.5
1,063,905	-				+1.0
1,063,929	+				-2.3
1,063,929	+				-0.3
1,063,929	+				-1.3
1,063,929	+				-0.7
1,063,929	+				-0.7
1,063,930	-				-0.7
1,063,930	-				-1.5
1,063,987	+				-2.3
1,063,987	+				-2.9
1,063,987	+				-1.0
1,063,987	+				-2.4
1,063,987	+				+0.3
1,063,987	+				-3.9
1,063,987	+				-2.3
1,063,988	-				-0.7
1,063,988	-				-0.9
1,063,988	-				-0.3
1,063,988	-				+0.0
1,063,988	-				-0.2
1,063,988	-				+0.1
1,063,989	+				-3.2
1,063,989	+				-1.9
1,064,038	+				-0.3
1,064,038	+				-3.6
1,064,052	+				-0.3
1,064,060	+				-2.5
1,064,060	+				+0.3
1,064,060	+				-1.0
1,064,060	+				+0.8
1,064,061	-				+0.7
1,064,061	-				+1.5
1,064,061	-				-2.6
1,064,061	-				-1.9
1,064,174	+				-1.3
1,064,175	-				+1.0
1,064,250	+				+0.6
1,064,251	-				+1.0
1,064,296	+				-1.3
1,064,296	+				-1.3
1,064,296	+				+1.6
1,064,296	+				-0.5
1,064,296	+				-1.0
1,064,296	+				-1.0
1,064,296	+				-0.3
1,064,296	+				+1.9
1,064,297	-				+0.5
1,064,297	-				+1.8
1,064,297	-				+0.8
1,064,381	-		Pf1N1B4_936	0.16	+0.7
1,064,407	+		Pf1N1B4_936	0.18	+0.8
1,064,408	-		Pf1N1B4_936	0.18	-1.4
1,064,488	+		Pf1N1B4_936	0.23	+0.1
1,064,488	+				-0.3
1,064,488	+		Pf1N1B4_936	0.23	+0.7
1,064,488	+		Pf1N1B4_936	0.23	-0.3
1,064,489	-				-1.3
1,064,489	-		Pf1N1B4_936	0.23	+2.9
1,064,489	-		Pf1N1B4_936	0.23	+2.5
1,064,489	-		Pf1N1B4_936	0.23	+1.7
1,064,489	-		Pf1N1B4_936	0.23	+0.6
1,064,489	-		Pf1N1B4_936	0.23	-3.0
1,064,503	+		Pf1N1B4_936	0.24	+1.2
1,064,504	-		Pf1N1B4_936	0.25	-1.5
1,064,665	+		Pf1N1B4_936	0.36	-3.0
1,064,665	+		Pf1N1B4_936	0.36	+0.8
1,064,666	-				-0.7
1,064,878	+		Pf1N1B4_936	0.51	-1.2
1,064,878	+		Pf1N1B4_936	0.51	-2.0
1,064,878	+		Pf1N1B4_936	0.51	-1.0
1,064,878	+		Pf1N1B4_936	0.51	-0.7
1,064,878	+		Pf1N1B4_936	0.51	-0.9
1,064,878	+		Pf1N1B4_936	0.51	-2.3
1,064,878	+		Pf1N1B4_936	0.51	-1.9
1,064,878	+		Pf1N1B4_936	0.51	-1.3
1,064,878	+		Pf1N1B4_936	0.51	-1.9
1,064,878	+		Pf1N1B4_936	0.51	-0.7
1,064,878	+		Pf1N1B4_936	0.51	-2.8
1,064,878	+		Pf1N1B4_936	0.51	-0.0
1,064,878	+		Pf1N1B4_936	0.51	+0.3
1,064,878	+		Pf1N1B4_936	0.51	-2.2
1,064,878	+		Pf1N1B4_936	0.51	-0.5
1,064,878	+		Pf1N1B4_936	0.51	-2.0
1,064,878	+		Pf1N1B4_936	0.51	-1.0
1,064,878	+		Pf1N1B4_936	0.51	-1.8
1,064,879	-		Pf1N1B4_936	0.51	+0.6
1,064,879	-		Pf1N1B4_936	0.51	-0.5
1,064,879	-		Pf1N1B4_936	0.51	+2.9
1,065,432	+		Pf1N1B4_936	0.90	-1.1
1,065,432	+		Pf1N1B4_936	0.90	-1.3
1,065,432	+		Pf1N1B4_936	0.90	-2.4
1,065,432	+		Pf1N1B4_936	0.90	-3.4
1,065,432	+		Pf1N1B4_936	0.90	-3.4
1,065,432	+				-1.3
1,065,432	+		Pf1N1B4_936	0.90	-1.9
1,065,432	+		Pf1N1B4_936	0.90	-2.9
1,065,432	+		Pf1N1B4_936	0.90	-2.8
1,065,432	+		Pf1N1B4_936	0.90	-1.5
1,065,432	+		Pf1N1B4_936	0.90	-2.8
1,065,432	+		Pf1N1B4_936	0.90	-0.7
1,065,432	+		Pf1N1B4_936	0.90	-2.9
1,065,432	+		Pf1N1B4_936	0.90	-1.5
1,065,432	+		Pf1N1B4_936	0.90	+1.3
1,065,432	+		Pf1N1B4_936	0.90	-1.8
1,065,432	+		Pf1N1B4_936	0.90	-2.0
1,065,433	-				-0.3
1,065,433	-		Pf1N1B4_936	0.90	-1.9
1,065,433	-		Pf1N1B4_936	0.90	-2.0
1,065,433	-		Pf1N1B4_936	0.90	-1.3
1,065,433	-		Pf1N1B4_936	0.90	+1.3
1,065,433	-		Pf1N1B4_936	0.90	+0.1
1,065,444	+				-1.3
1,065,444	+				-3.2
1,065,465	+				-2.4
1,065,465	+				+0.3
1,065,465	+				-1.3
1,065,466	-				+1.0
1,065,466	-				-0.7
1,065,529	+				-2.4
1,065,529	+				-0.7
1,065,529	+				-2.0
1,065,530	-				-0.5
1,065,530	-				-0.0
1,065,581	+				-2.4
1,065,581	+				-2.4
1,065,581	+				-1.5
1,065,581	+				-1.9
1,065,581	+				-2.4
1,065,581	+				-1.3
1,065,582	-				-2.0
1,065,582	-				-0.0
1,065,621	+				-2.5
1,065,621	+				-1.4
1,065,637	+				-1.3
1,065,637	+				-2.0
1,065,638	-				-1.0
1,065,638	-				+1.3
1,065,656	+				-1.0
1,065,656	+				-1.3
1,065,656	+				-2.5
1,065,723	-				-1.5
1,065,723	-				+1.3
1,065,743	+				-0.3
1,065,743	+				-2.7
1,065,743	+				-0.7
1,065,744	-				-2.6
1,065,744	-				-2.5
1,065,751	-				-1.8
1,065,758	+				+0.3
1,065,776	-				-1.9