Experiment: Doxycycline hyclate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4972 and Pf1N1B4_4973 are separated by 114 nucleotides Pf1N1B4_4973 and Pf1N1B4_4974 are separated by 32 nucleotides Pf1N1B4_4974 and Pf1N1B4_4975 are separated by 826 nucleotides
Pf1N1B4_4972 - CELL PROCESSES; Adaptation; adaptations, atypical conditions, at 5,512,158 to 5,512,988
_4972
Pf1N1B4_4973 - hypothetical protein, at 5,513,103 to 5,513,387
_4973
Pf1N1B4_4974 - Protease subunit of ATP-dependent Clp proteases, at 5,513,420 to 5,513,977
_4974
Pf1N1B4_4975 - hypothetical protein, at 5,514,804 to 5,515,145
_4975
Position (kb) 5513
5514 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5512.857 kb on + strand, within Pf1N1B4_4972 at 5512.857 kb on + strand, within Pf1N1B4_4972 at 5512.857 kb on + strand, within Pf1N1B4_4972 at 5512.993 kb on + strand at 5513.057 kb on - strand at 5513.095 kb on + strand at 5513.096 kb on - strand at 5513.167 kb on + strand, within Pf1N1B4_4973 at 5513.202 kb on + strand, within Pf1N1B4_4973 at 5513.203 kb on - strand, within Pf1N1B4_4973 at 5513.203 kb on - strand, within Pf1N1B4_4973 at 5513.205 kb on + strand, within Pf1N1B4_4973 at 5513.205 kb on + strand, within Pf1N1B4_4973 at 5513.258 kb on + strand, within Pf1N1B4_4973 at 5513.263 kb on - strand, within Pf1N1B4_4973 at 5513.263 kb on - strand, within Pf1N1B4_4973 at 5513.263 kb on - strand, within Pf1N1B4_4973 at 5513.263 kb on - strand, within Pf1N1B4_4973 at 5513.269 kb on + strand, within Pf1N1B4_4973 at 5513.270 kb on - strand, within Pf1N1B4_4973 at 5513.499 kb on - strand, within Pf1N1B4_4974 at 5513.634 kb on + strand, within Pf1N1B4_4974 at 5513.676 kb on + strand at 5513.821 kb on - strand, within Pf1N1B4_4974 at 5514.003 kb on + strand at 5514.024 kb on + strand at 5514.025 kb on - strand at 5514.084 kb on - strand at 5514.094 kb on + strand at 5514.096 kb on + strand at 5514.118 kb on + strand at 5514.147 kb on + strand at 5514.147 kb on + strand at 5514.147 kb on + strand at 5514.147 kb on + strand at 5514.147 kb on + strand at 5514.147 kb on + strand at 5514.147 kb on + strand at 5514.220 kb on - strand at 5514.363 kb on + strand at 5514.558 kb on + strand at 5514.580 kb on + strand at 5514.580 kb on + strand at 5514.580 kb on + strand at 5514.580 kb on + strand at 5514.580 kb on + strand at 5514.580 kb on + strand at 5514.679 kb on + strand at 5514.679 kb on + strand at 5514.679 kb on + strand at 5514.679 kb on + strand at 5514.679 kb on + strand at 5514.679 kb on + strand at 5514.680 kb on - strand at 5514.691 kb on + strand at 5514.691 kb on + strand at 5514.691 kb on + strand at 5514.691 kb on + strand at 5514.695 kb on - strand at 5514.695 kb on - strand at 5514.814 kb on + strand at 5514.814 kb on + strand at 5514.814 kb on + strand at 5514.815 kb on - strand at 5514.815 kb on - strand at 5514.919 kb on - strand, within Pf1N1B4_4975
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml remove 5,512,857 + Pf1N1B4_4972 0.84 -0.2 5,512,857 + Pf1N1B4_4972 0.84 +2.0 5,512,857 + Pf1N1B4_4972 0.84 +0.4 5,512,993 + -1.7 5,513,057 - +2.0 5,513,095 + -0.2 5,513,096 - +1.3 5,513,167 + Pf1N1B4_4973 0.22 -1.0 5,513,202 + Pf1N1B4_4973 0.35 +0.2 5,513,203 - Pf1N1B4_4973 0.35 +0.5 5,513,203 - Pf1N1B4_4973 0.35 +0.0 5,513,205 + Pf1N1B4_4973 0.36 -0.2 5,513,205 + Pf1N1B4_4973 0.36 -2.2 5,513,258 + Pf1N1B4_4973 0.54 +0.4 5,513,263 - Pf1N1B4_4973 0.56 +0.3 5,513,263 - Pf1N1B4_4973 0.56 -1.0 5,513,263 - Pf1N1B4_4973 0.56 -1.0 5,513,263 - Pf1N1B4_4973 0.56 +1.1 5,513,269 + Pf1N1B4_4973 0.58 -1.2 5,513,270 - Pf1N1B4_4973 0.59 +1.2 5,513,499 - Pf1N1B4_4974 0.14 -1.6 5,513,634 + Pf1N1B4_4974 0.38 -0.8 5,513,676 + -0.8 5,513,821 - Pf1N1B4_4974 0.72 -1.1 5,514,003 + -0.0 5,514,024 + -3.0 5,514,025 - -0.8 5,514,084 - +0.0 5,514,094 + +1.8 5,514,096 + +1.2 5,514,118 + +0.8 5,514,147 + +1.0 5,514,147 + -2.0 5,514,147 + +0.2 5,514,147 + +0.3 5,514,147 + -1.8 5,514,147 + -0.8 5,514,147 + -0.8 5,514,220 - -2.0 5,514,363 + -0.7 5,514,558 + +0.5 5,514,580 + -0.7 5,514,580 + +0.0 5,514,580 + +2.0 5,514,580 + -3.4 5,514,580 + +0.2 5,514,580 + +1.2 5,514,679 + +0.0 5,514,679 + -0.0 5,514,679 + -0.1 5,514,679 + +1.4 5,514,679 + +0.2 5,514,679 + +0.6 5,514,680 - -1.4 5,514,691 + +0.4 5,514,691 + -1.0 5,514,691 + +0.0 5,514,691 + -0.7 5,514,695 - +1.0 5,514,695 - -0.8 5,514,814 + -1.2 5,514,814 + -0.2 5,514,814 + -1.2 5,514,815 - +1.5 5,514,815 - -1.6 5,514,919 - Pf1N1B4_4975 0.34 +0.8
Or see this region's nucleotide sequence