Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4861

Experiment: Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4860 and Pf1N1B4_4861 are separated by 14 nucleotidesPf1N1B4_4861 and Pf1N1B4_4862 are separated by 257 nucleotides Pf1N1B4_4860 - Sensory box sensor histidine kinase/response regulator (EC 2.7.3.-), at 5,373,524 to 5,375,176 _4860 Pf1N1B4_4861 - KaiC, at 5,375,191 to 5,376,693 _4861 Pf1N1B4_4862 - TPR domain protein, at 5,376,951 to 5,378,006 _4862 Position (kb) 5375 5376 5377Strain fitness (log2 ratio) -2 -1 0 1at 5374.789 kb on - strand, within Pf1N1B4_4860at 5375.235 kb on - strandat 5375.254 kb on + strandat 5375.431 kb on - strand, within Pf1N1B4_4861at 5375.514 kb on - strand, within Pf1N1B4_4861at 5375.944 kb on + strand, within Pf1N1B4_4861at 5375.945 kb on - strand, within Pf1N1B4_4861at 5375.946 kb on + strand, within Pf1N1B4_4861at 5375.946 kb on + strand, within Pf1N1B4_4861at 5375.946 kb on + strand, within Pf1N1B4_4861at 5375.947 kb on - strand, within Pf1N1B4_4861at 5375.947 kb on - strand, within Pf1N1B4_4861at 5375.949 kb on - strand, within Pf1N1B4_4861at 5375.949 kb on - strand, within Pf1N1B4_4861at 5375.949 kb on - strand, within Pf1N1B4_4861at 5375.949 kb on - strand, within Pf1N1B4_4861at 5376.206 kb on + strand, within Pf1N1B4_4861at 5376.207 kb on - strand, within Pf1N1B4_4861at 5376.365 kb on + strand, within Pf1N1B4_4861at 5376.365 kb on + strand, within Pf1N1B4_4861at 5376.507 kb on - strand, within Pf1N1B4_4861at 5376.687 kb on + strandat 5376.812 kb on + strandat 5376.812 kb on + strandat 5376.813 kb on - strandat 5377.049 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml
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5,374,789 - Pf1N1B4_4860 0.77 -1.5
5,375,235 - +0.3
5,375,254 + -0.7
5,375,431 - Pf1N1B4_4861 0.16 -1.8
5,375,514 - Pf1N1B4_4861 0.21 -0.4
5,375,944 + Pf1N1B4_4861 0.50 -1.8
5,375,945 - Pf1N1B4_4861 0.50 +1.3
5,375,946 + Pf1N1B4_4861 0.50 +0.8
5,375,946 + Pf1N1B4_4861 0.50 +0.8
5,375,946 + Pf1N1B4_4861 0.50 +0.6
5,375,947 - Pf1N1B4_4861 0.50 -0.4
5,375,947 - Pf1N1B4_4861 0.50 -0.7
5,375,949 - Pf1N1B4_4861 0.50 +0.8
5,375,949 - Pf1N1B4_4861 0.50 +1.4
5,375,949 - Pf1N1B4_4861 0.50 -1.5
5,375,949 - Pf1N1B4_4861 0.50 -2.0
5,376,206 + Pf1N1B4_4861 0.68 +0.8
5,376,207 - Pf1N1B4_4861 0.68 +0.5
5,376,365 + Pf1N1B4_4861 0.78 +0.8
5,376,365 + Pf1N1B4_4861 0.78 +1.1
5,376,507 - Pf1N1B4_4861 0.88 +0.0
5,376,687 + -0.2
5,376,812 + +0.2
5,376,812 + -1.2
5,376,813 - +0.8
5,377,049 - -1.8

Or see this region's nucleotide sequence