Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4375

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
4,830,775	+				+0.9
4,830,775	+		Pf1N1B4_4373	0.10	-0.7
4,830,775	+		Pf1N1B4_4373	0.10	-0.7
4,830,901	+				+0.5
4,830,902	-				-1.4
4,831,020	+				+0.2
4,831,020	+				+0.5
4,831,070	+				-0.9
4,831,070	+				+0.9
4,831,071	-				-0.7
4,831,119	+				-0.7
4,831,269	+				+0.9
4,831,269	+				-1.3
4,831,269	+				+0.9
4,831,270	-				+3.1
4,831,569	+		Pf1N1B4_4374	0.58	+0.4
4,831,570	-		Pf1N1B4_4374	0.58	-1.1
4,831,679	-		Pf1N1B4_4374	0.85	-1.4
4,831,679	-		Pf1N1B4_4374	0.85	-2.1
4,831,691	+		Pf1N1B4_4374	0.88	+0.7
4,831,691	+		Pf1N1B4_4374	0.88	-0.7
4,831,691	+		Pf1N1B4_4374	0.88	-0.7
4,831,691	+		Pf1N1B4_4374	0.88	+0.2
4,831,691	+		Pf1N1B4_4374	0.88	-0.1
4,831,692	-		Pf1N1B4_4374	0.89	+0.7
4,831,730	+				-0.7
4,831,730	+				+1.4
4,831,730	+				+1.7
4,831,730	+				-0.1
4,831,731	-				-1.7
4,832,131	-				+0.9
4,832,262	+		Pf1N1B4_4375	0.38	+2.2
4,832,262	+		Pf1N1B4_4375	0.38	+1.3
4,832,263	-		Pf1N1B4_4375	0.38	-0.6
4,832,263	-		Pf1N1B4_4375	0.38	+0.3
4,832,263	-		Pf1N1B4_4375	0.38	+0.2
4,832,263	-				-0.1
4,832,312	-		Pf1N1B4_4375	0.41	+0.4
4,832,423	-				+0.5
4,832,550	+		Pf1N1B4_4375	0.59	+0.5
4,832,763	+		Pf1N1B4_4375	0.74	+0.7
4,832,763	+		Pf1N1B4_4375	0.74	+0.5
4,832,763	+		Pf1N1B4_4375	0.74	-2.8
4,832,763	+		Pf1N1B4_4375	0.74	-1.9
4,832,764	-		Pf1N1B4_4375	0.75	+0.5
4,832,764	-				-0.1
4,832,764	-		Pf1N1B4_4375	0.75	-1.4
4,832,764	-		Pf1N1B4_4375	0.75	+0.5
4,832,764	-		Pf1N1B4_4375	0.75	+2.8
4,832,862	+		Pf1N1B4_4375	0.82	-0.4
4,832,862	+		Pf1N1B4_4375	0.82	+0.5
4,832,863	-		Pf1N1B4_4375	0.82	+1.9
4,832,907	+		Pf1N1B4_4375	0.85	-1.1
4,832,907	+		Pf1N1B4_4375	0.85	-1.7
4,833,174	+				+2.9
4,833,402	+				+1.2
4,833,402	+		Pf1N1B4_4376	0.30	+0.3
4,833,402	+		Pf1N1B4_4376	0.30	+0.1
4,833,406	+		Pf1N1B4_4376	0.31	-0.7
4,833,406	+		Pf1N1B4_4376	0.31	-1.7
4,833,406	+				-0.7
4,833,407	-		Pf1N1B4_4376	0.31	-1.7
4,833,407	-		Pf1N1B4_4376	0.31	+1.0
4,833,407	-		Pf1N1B4_4376	0.31	-2.9
4,833,407	-		Pf1N1B4_4376	0.31	-1.9
4,834,081	+				-0.7
4,834,082	-				-0.4
4,834,082	-				-0.1
4,834,082	-				-1.4