Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4088

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
4,535,232	+		Pf1N1B4_4086	0.61	-0.1
4,535,248	+				+0.9
4,535,478	+		Pf1N1B4_4086	0.85	-0.1
4,535,478	+		Pf1N1B4_4086	0.85	-1.9
4,535,479	-		Pf1N1B4_4086	0.85	+0.9
4,535,529	+		Pf1N1B4_4086	0.90	-0.2
4,535,529	+		Pf1N1B4_4086	0.90	-1.7
4,535,530	-		Pf1N1B4_4086	0.90	-1.7
4,535,642	-				-1.9
4,535,714	-				-1.1
4,535,714	-				-1.0
4,535,717	-				-0.1
4,535,761	-		Pf1N1B4_4087	0.17	-1.4
4,535,804	-		Pf1N1B4_4087	0.28	-0.7
4,535,842	-				+0.9
4,535,849	+		Pf1N1B4_4087	0.40	-1.7
4,535,850	-		Pf1N1B4_4087	0.40	-1.4
4,535,941	-		Pf1N1B4_4087	0.65	+2.2
4,535,941	-		Pf1N1B4_4087	0.65	+0.6
4,535,941	-		Pf1N1B4_4087	0.65	-2.1
4,535,941	-		Pf1N1B4_4087	0.65	-0.4
4,535,941	-		Pf1N1B4_4087	0.65	+2.1
4,535,975	-		Pf1N1B4_4087	0.74	-0.1
4,536,061	-				+1.2
4,536,061	-				+0.2
4,536,074	-				+1.6
4,536,074	-				+1.6
4,536,139	-				+2.9
4,536,200	+				-1.5
4,536,490	-		Pf1N1B4_4088	0.79	-1.1
4,536,492	-		Pf1N1B4_4088	0.80	+1.8
4,536,492	-		Pf1N1B4_4088	0.80	-0.1
4,536,492	-				+1.3
4,536,492	-		Pf1N1B4_4088	0.80	+0.6
4,536,557	+				-1.9
4,536,731	-				-0.5
4,536,791	+				-0.9
4,536,791	+				+0.3
4,536,792	-				+0.2
4,536,817	+				-0.5
4,536,853	-				-2.8
4,536,969	+				+1.3
4,536,970	-				-2.1
4,536,977	-				-1.4
4,537,171	+		Pf1N1B4_4089	0.57	-0.7
4,537,171	+		Pf1N1B4_4089	0.57	-2.4
4,537,172	-		Pf1N1B4_4089	0.57	+0.9
4,537,184	-		Pf1N1B4_4089	0.61	-0.1
4,537,276	-		Pf1N1B4_4089	0.86	-0.0
4,537,324	+				-1.1
4,537,324	+				+1.4
4,537,325	-				-0.7
4,537,325	-				+1.7
4,537,395	-				+0.7
4,537,406	+				-1.4
4,537,464	+				-0.7
4,537,465	-				+0.3
4,537,466	+				-1.7
4,537,466	+				+2.2
4,537,466	+				+1.3
4,537,467	-				-0.7
4,537,467	-				-2.1
4,537,508	-				-1.3
4,537,517	-				+1.9