Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_389

Experiment: Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_387 and Pf1N1B4_388 are separated by 120 nucleotidesPf1N1B4_388 and Pf1N1B4_389 overlap by 4 nucleotidesPf1N1B4_389 and Pf1N1B4_390 are separated by 9 nucleotidesPf1N1B4_390 and Pf1N1B4_391 are separated by 106 nucleotides Pf1N1B4_387 - hypothetical protein, at 456,582 to 456,695 _387 Pf1N1B4_388 - OmpA family protein, at 456,816 to 457,628 _388 Pf1N1B4_389 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 457,625 to 457,981 _389 Pf1N1B4_390 - Extracellular solute-binding protein, family 3, at 457,991 to 458,827 _390 Pf1N1B4_391 - Electron transfer flavoprotein, alpha subunit, at 458,934 to 459,863 _391 Position (kb) 457 458Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 456.634 kb on + strand, within Pf1N1B4_387at 456.634 kb on + strand, within Pf1N1B4_387at 456.634 kb on + strand, within Pf1N1B4_387at 456.635 kb on - strand, within Pf1N1B4_387at 456.665 kb on + strand, within Pf1N1B4_387at 456.673 kb on + strand, within Pf1N1B4_387at 456.703 kb on + strandat 456.703 kb on + strandat 456.703 kb on + strandat 456.703 kb on + strandat 456.944 kb on + strandat 456.944 kb on + strand, within Pf1N1B4_388at 456.945 kb on - strand, within Pf1N1B4_388at 456.945 kb on - strand, within Pf1N1B4_388at 456.945 kb on - strand, within Pf1N1B4_388at 456.945 kb on - strand, within Pf1N1B4_388at 456.945 kb on - strandat 456.945 kb on - strand, within Pf1N1B4_388at 456.945 kb on - strand, within Pf1N1B4_388at 456.945 kb on - strand, within Pf1N1B4_388at 457.048 kb on + strand, within Pf1N1B4_388at 457.049 kb on - strand, within Pf1N1B4_388at 457.049 kb on - strand, within Pf1N1B4_388at 457.366 kb on + strand, within Pf1N1B4_388at 457.367 kb on - strand, within Pf1N1B4_388at 457.381 kb on + strand, within Pf1N1B4_388at 457.381 kb on + strand, within Pf1N1B4_388at 457.381 kb on + strand, within Pf1N1B4_388at 457.381 kb on + strand, within Pf1N1B4_388at 457.381 kb on + strand, within Pf1N1B4_388at 457.382 kb on - strand, within Pf1N1B4_388at 457.387 kb on + strand, within Pf1N1B4_388at 457.388 kb on - strand, within Pf1N1B4_388at 457.388 kb on - strand, within Pf1N1B4_388at 457.418 kb on - strand, within Pf1N1B4_388at 457.418 kb on - strand, within Pf1N1B4_388at 457.571 kb on - strandat 457.670 kb on - strand, within Pf1N1B4_389at 457.898 kb on + strand, within Pf1N1B4_389at 457.898 kb on + strand, within Pf1N1B4_389at 457.898 kb on + strand, within Pf1N1B4_389at 457.898 kb on + strand, within Pf1N1B4_389at 457.898 kb on + strand, within Pf1N1B4_389at 457.898 kb on + strand, within Pf1N1B4_389at 457.898 kb on + strand, within Pf1N1B4_389at 457.898 kb on + strand, within Pf1N1B4_389at 457.898 kb on + strand, within Pf1N1B4_389at 457.898 kb on + strand, within Pf1N1B4_389at 457.898 kb on + strand, within Pf1N1B4_389at 457.898 kb on + strand, within Pf1N1B4_389at 457.898 kb on + strand, within Pf1N1B4_389at 457.898 kb on + strand, within Pf1N1B4_389at 457.898 kb on + strand, within Pf1N1B4_389at 457.899 kb on - strand, within Pf1N1B4_389at 457.899 kb on - strand, within Pf1N1B4_389at 457.899 kb on - strand, within Pf1N1B4_389at 457.899 kb on - strand, within Pf1N1B4_389at 457.899 kb on - strand, within Pf1N1B4_389at 457.899 kb on - strand, within Pf1N1B4_389at 457.899 kb on - strand, within Pf1N1B4_389at 457.975 kb on + strandat 457.975 kb on + strandat 457.976 kb on - strandat 457.976 kb on - strandat 457.982 kb on + strandat 457.983 kb on - strandat 457.992 kb on + strandat 458.113 kb on + strand, within Pf1N1B4_390at 458.155 kb on + strand, within Pf1N1B4_390at 458.257 kb on - strand, within Pf1N1B4_390at 458.375 kb on + strand, within Pf1N1B4_390at 458.375 kb on + strand, within Pf1N1B4_390at 458.433 kb on + strand, within Pf1N1B4_390at 458.441 kb on + strand, within Pf1N1B4_390at 458.469 kb on + strand, within Pf1N1B4_390at 458.499 kb on + strand, within Pf1N1B4_390at 458.499 kb on + strandat 458.499 kb on + strand, within Pf1N1B4_390at 458.499 kb on + strand, within Pf1N1B4_390at 458.500 kb on - strand, within Pf1N1B4_390at 458.500 kb on - strand, within Pf1N1B4_390at 458.601 kb on + strand, within Pf1N1B4_390at 458.673 kb on + strand, within Pf1N1B4_390at 458.673 kb on + strand, within Pf1N1B4_390at 458.673 kb on + strand, within Pf1N1B4_390at 458.673 kb on + strand, within Pf1N1B4_390at 458.673 kb on + strand, within Pf1N1B4_390at 458.673 kb on + strand, within Pf1N1B4_390at 458.673 kb on + strand, within Pf1N1B4_390at 458.673 kb on + strand, within Pf1N1B4_390at 458.673 kb on + strand, within Pf1N1B4_390at 458.674 kb on - strand, within Pf1N1B4_390at 458.674 kb on - strand, within Pf1N1B4_390at 458.704 kb on - strand, within Pf1N1B4_390at 458.795 kb on + strandat 458.840 kb on + strandat 458.840 kb on + strandat 458.841 kb on - strandat 458.841 kb on - strandat 458.850 kb on + strandat 458.872 kb on + strandat 458.872 kb on + strandat 458.915 kb on + strandat 458.915 kb on + strandat 458.915 kb on + strandat 458.916 kb on - strandat 458.916 kb on - strandat 458.916 kb on - strandat 458.916 kb on - strandat 458.916 kb on - strandat 458.916 kb on - strandat 458.916 kb on - strandat 458.917 kb on + strandat 458.917 kb on + strandat 458.917 kb on + strandat 458.917 kb on + strandat 458.917 kb on + strandat 458.917 kb on + strandat 458.917 kb on + strandat 458.917 kb on + strandat 458.917 kb on + strandat 458.917 kb on + strandat 458.917 kb on + strandat 458.917 kb on + strandat 458.918 kb on - strandat 458.918 kb on - strandat 458.918 kb on - strandat 458.918 kb on - strandat 458.935 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml
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456,634 + Pf1N1B4_387 0.46 +1.0
456,634 + Pf1N1B4_387 0.46 +0.1
456,634 + Pf1N1B4_387 0.46 +1.4
456,635 - Pf1N1B4_387 0.46 +0.4
456,665 + Pf1N1B4_387 0.73 -0.4
456,673 + Pf1N1B4_387 0.80 -1.1
456,703 + +1.6
456,703 + +2.0
456,703 + +1.1
456,703 + -0.4
456,944 + -0.9
456,944 + Pf1N1B4_388 0.16 -0.9
456,945 - Pf1N1B4_388 0.16 -0.4
456,945 - Pf1N1B4_388 0.16 -0.4
456,945 - Pf1N1B4_388 0.16 -2.6
456,945 - Pf1N1B4_388 0.16 -2.7
456,945 - +1.1
456,945 - Pf1N1B4_388 0.16 -1.2
456,945 - Pf1N1B4_388 0.16 -2.0
456,945 - Pf1N1B4_388 0.16 -1.4
457,048 + Pf1N1B4_388 0.29 +0.1
457,049 - Pf1N1B4_388 0.29 -3.3
457,049 - Pf1N1B4_388 0.29 -2.5
457,366 + Pf1N1B4_388 0.68 -1.3
457,367 - Pf1N1B4_388 0.68 -2.2
457,381 + Pf1N1B4_388 0.69 -1.3
457,381 + Pf1N1B4_388 0.69 -0.9
457,381 + Pf1N1B4_388 0.69 -1.7
457,381 + Pf1N1B4_388 0.69 -2.3
457,381 + Pf1N1B4_388 0.69 -3.0
457,382 - Pf1N1B4_388 0.70 -2.3
457,387 + Pf1N1B4_388 0.70 -2.0
457,388 - Pf1N1B4_388 0.70 -1.4
457,388 - Pf1N1B4_388 0.70 -2.6
457,418 - Pf1N1B4_388 0.74 -1.2
457,418 - Pf1N1B4_388 0.74 -1.4
457,571 - -2.2
457,670 - Pf1N1B4_389 0.13 -2.4
457,898 + Pf1N1B4_389 0.76 -1.3
457,898 + Pf1N1B4_389 0.76 -0.4
457,898 + Pf1N1B4_389 0.76 -2.8
457,898 + Pf1N1B4_389 0.76 -3.4
457,898 + Pf1N1B4_389 0.76 -0.9
457,898 + Pf1N1B4_389 0.76 -1.7
457,898 + Pf1N1B4_389 0.76 -2.4
457,898 + Pf1N1B4_389 0.76 -1.9
457,898 + Pf1N1B4_389 0.76 -2.0
457,898 + Pf1N1B4_389 0.76 -1.4
457,898 + Pf1N1B4_389 0.76 -1.9
457,898 + Pf1N1B4_389 0.76 -0.9
457,898 + Pf1N1B4_389 0.76 -2.4
457,898 + Pf1N1B4_389 0.76 -0.9
457,898 + Pf1N1B4_389 0.76 -3.2
457,899 - Pf1N1B4_389 0.77 +0.1
457,899 - Pf1N1B4_389 0.77 -3.6
457,899 - Pf1N1B4_389 0.77 -1.7
457,899 - Pf1N1B4_389 0.77 -3.3
457,899 - Pf1N1B4_389 0.77 -0.9
457,899 - Pf1N1B4_389 0.77 -1.2
457,899 - Pf1N1B4_389 0.77 -1.4
457,975 + -0.9
457,975 + -2.2
457,976 - -2.3
457,976 - -3.4
457,982 + -2.6
457,983 - -2.0
457,992 + -2.0
458,113 + Pf1N1B4_390 0.15 -2.0
458,155 + Pf1N1B4_390 0.20 -2.3
458,257 - Pf1N1B4_390 0.32 +0.0
458,375 + Pf1N1B4_390 0.46 -0.4
458,375 + Pf1N1B4_390 0.46 -1.0
458,433 + Pf1N1B4_390 0.53 +3.1
458,441 + Pf1N1B4_390 0.54 +0.2
458,469 + Pf1N1B4_390 0.57 +0.6
458,499 + Pf1N1B4_390 0.61 +0.6
458,499 + +0.1
458,499 + Pf1N1B4_390 0.61 -0.4
458,499 + Pf1N1B4_390 0.61 -0.8
458,500 - Pf1N1B4_390 0.61 +0.6
458,500 - Pf1N1B4_390 0.61 +0.6
458,601 + Pf1N1B4_390 0.73 -1.4
458,673 + Pf1N1B4_390 0.81 -1.2
458,673 + Pf1N1B4_390 0.81 +0.9
458,673 + Pf1N1B4_390 0.81 -2.0
458,673 + Pf1N1B4_390 0.81 -0.9
458,673 + Pf1N1B4_390 0.81 +0.2
458,673 + Pf1N1B4_390 0.81 +2.0
458,673 + Pf1N1B4_390 0.81 -0.4
458,673 + Pf1N1B4_390 0.81 -0.4
458,673 + Pf1N1B4_390 0.81 -0.0
458,674 - Pf1N1B4_390 0.82 +1.5
458,674 - Pf1N1B4_390 0.82 -1.2
458,704 - Pf1N1B4_390 0.85 +0.4
458,795 + +0.1
458,840 + +1.1
458,840 + +1.1
458,841 - -2.4
458,841 - +2.3
458,850 + -0.9
458,872 + -0.4
458,872 + +1.7
458,915 + -0.9
458,915 + -0.9
458,915 + -0.7
458,916 - -3.3
458,916 - -1.4
458,916 - +1.1
458,916 - -0.7
458,916 - +0.8
458,916 - +1.6
458,916 - +0.1
458,917 + -0.9
458,917 + -1.4
458,917 + -0.7
458,917 + -0.2
458,917 + +1.1
458,917 + +1.1
458,917 + +1.1
458,917 + +1.7
458,917 + -0.9
458,917 + +0.4
458,917 + +1.1
458,917 + +0.3
458,918 - +0.4
458,918 - +1.1
458,918 - +0.1
458,918 - -0.3
458,935 + -1.6

Or see this region's nucleotide sequence