Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3748

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
4,158,522	+		Pf1N1B4_3747	0.27	-0.5
4,158,732	+		Pf1N1B4_3747	0.53	+0.5
4,158,810	+		Pf1N1B4_3747	0.62	+0.4
4,158,810	+		Pf1N1B4_3747	0.62	+0.1
4,158,810	+		Pf1N1B4_3747	0.62	+0.1
4,158,810	+		Pf1N1B4_3747	0.62	-0.0
4,158,810	+		Pf1N1B4_3747	0.62	-2.6
4,158,810	+		Pf1N1B4_3747	0.62	-1.7
4,158,810	+		Pf1N1B4_3747	0.62	-0.3
4,158,811	-				-0.9
4,158,831	+		Pf1N1B4_3747	0.65	-0.4
4,158,871	-		Pf1N1B4_3747	0.70	-1.7
4,158,876	+		Pf1N1B4_3747	0.70	+0.9
4,158,877	-		Pf1N1B4_3747	0.71	-0.3
4,158,963	+		Pf1N1B4_3747	0.81	-0.5
4,158,963	+		Pf1N1B4_3747	0.81	+1.5
4,159,005	+		Pf1N1B4_3747	0.86	+1.4
4,159,006	-		Pf1N1B4_3747	0.86	+1.1
4,159,006	-		Pf1N1B4_3747	0.86	-1.2
4,159,006	-		Pf1N1B4_3747	0.86	-0.5
4,159,032	+				+2.5
4,159,071	+				+2.5
4,159,149	+				+0.6
4,159,149	+				+1.1
4,159,221	+				-0.7
4,159,221	+				-0.6
4,159,221	+				+1.1
4,159,221	+				-0.2
4,159,222	-				-0.5
4,159,296	-				+0.1
4,159,395	-				+0.1
4,159,395	-				+1.3
4,159,395	-				-0.7
4,159,395	-				-0.2
4,159,511	+		Pf1N1B4_3748	0.20	-0.5
4,159,511	+		Pf1N1B4_3748	0.20	+1.6
4,159,512	-		Pf1N1B4_3748	0.20	+0.1
4,159,512	-		Pf1N1B4_3748	0.20	-0.4
4,159,512	-		Pf1N1B4_3748	0.20	+0.1
4,159,512	-		Pf1N1B4_3748	0.20	-2.1
4,159,512	-		Pf1N1B4_3748	0.20	-0.9
4,159,550	+		Pf1N1B4_3748	0.24	-0.5
4,159,551	-		Pf1N1B4_3748	0.24	+1.1
4,159,551	-		Pf1N1B4_3748	0.24	+0.2
4,159,613	+		Pf1N1B4_3748	0.30	-0.9
4,159,613	+		Pf1N1B4_3748	0.30	+1.1
4,159,614	-		Pf1N1B4_3748	0.30	-0.9
4,159,614	-		Pf1N1B4_3748	0.30	-1.1
4,159,643	+		Pf1N1B4_3748	0.33	+0.8
4,159,643	+		Pf1N1B4_3748	0.33	-0.7
4,159,643	+		Pf1N1B4_3748	0.33	-0.3
4,159,644	-		Pf1N1B4_3748	0.33	+0.1
4,159,644	-		Pf1N1B4_3748	0.33	-2.8
4,159,644	-		Pf1N1B4_3748	0.33	+1.5
4,159,816	+		Pf1N1B4_3748	0.49	+0.0
4,159,869	-		Pf1N1B4_3748	0.54	-0.3
4,159,958	+		Pf1N1B4_3748	0.62	+3.0
4,159,958	+		Pf1N1B4_3748	0.62	+1.5
4,160,025	+		Pf1N1B4_3748	0.69	-0.5
4,160,025	+		Pf1N1B4_3748	0.69	+0.4
4,160,025	+		Pf1N1B4_3748	0.69	+1.3
4,160,025	+		Pf1N1B4_3748	0.69	+0.6
4,160,026	-		Pf1N1B4_3748	0.69	+0.5
4,160,026	-		Pf1N1B4_3748	0.69	+0.9
4,160,027	+				+0.4
4,160,028	+		Pf1N1B4_3748	0.69	-1.2
4,160,174	+				-1.2
4,160,175	-		Pf1N1B4_3748	0.83	+3.1
4,160,175	-		Pf1N1B4_3748	0.83	+0.4
4,160,420	+				-0.4
4,160,421	-				-1.5
4,160,421	-				+0.8
4,160,540	+				+0.4
4,160,540	+				+2.2
4,160,540	+				-2.1
4,160,613	+				+0.7
4,160,613	+				+0.4
4,160,614	-				-1.7
4,160,614	-				+0.2
4,160,614	-				+1.9
4,160,624	+				+0.1
4,160,625	-				-0.1
4,160,697	+				+0.6
4,160,863	+		Pf1N1B4_3749	0.22	-0.2
4,160,940	+		Pf1N1B4_3749	0.32	+0.1
4,160,940	+		Pf1N1B4_3749	0.32	-0.3
4,161,129	+		Pf1N1B4_3749	0.59	+2.2
4,161,129	+		Pf1N1B4_3749	0.59	+0.5
4,161,129	+		Pf1N1B4_3749	0.59	-0.5
4,161,129	+		Pf1N1B4_3749	0.59	-0.9
4,161,129	+		Pf1N1B4_3749	0.59	-1.9
4,161,129	+		Pf1N1B4_3749	0.59	+0.8
4,161,129	+		Pf1N1B4_3749	0.59	+0.9
4,161,129	+		Pf1N1B4_3749	0.59	+0.3
4,161,130	-		Pf1N1B4_3749	0.59	+0.7
4,161,130	-		Pf1N1B4_3749	0.59	+1.4
4,161,130	-		Pf1N1B4_3749	0.59	+0.1
4,161,130	-		Pf1N1B4_3749	0.59	-2.2
4,161,130	-		Pf1N1B4_3749	0.59	+0.4
4,161,141	+		Pf1N1B4_3749	0.61	-1.4
4,161,141	+		Pf1N1B4_3749	0.61	-0.3
4,161,207	+		Pf1N1B4_3749	0.70	-0.3
4,161,207	+		Pf1N1B4_3749	0.70	-1.7
4,161,208	-		Pf1N1B4_3749	0.70	+1.1
4,161,208	-		Pf1N1B4_3749	0.70	-1.5
4,161,208	-		Pf1N1B4_3749	0.70	+0.4
4,161,208	-				+1.1
4,161,339	+		Pf1N1B4_3749	0.88	+1.4