Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3413

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
3,802,811	-		Pf1N1B4_3411	0.44	-0.9
3,802,820	+		Pf1N1B4_3411	0.47	+1.3
3,802,820	+		Pf1N1B4_3411	0.47	+0.1
3,802,820	+		Pf1N1B4_3411	0.47	-0.2
3,802,946	+		Pf1N1B4_3411	0.86	-1.9
3,802,947	-		Pf1N1B4_3411	0.86	-0.5
3,802,947	-		Pf1N1B4_3411	0.86	+0.1
3,802,960	+				+0.1
3,802,964	-				-2.3
3,802,964	-				+2.6
3,803,051	-				+0.4
3,803,105	+		Pf1N1B4_3412	0.17	-2.5
3,803,105	-		Pf1N1B4_3412	0.17	-0.2
3,803,168	+		Pf1N1B4_3412	0.25	-0.7
3,803,579	+		Pf1N1B4_3412	0.83	-1.6
3,803,579	+		Pf1N1B4_3412	0.83	-1.9
3,803,579	+		Pf1N1B4_3412	0.83	+1.5
3,803,579	+		Pf1N1B4_3412	0.83	-1.5
3,803,579	+		Pf1N1B4_3412	0.83	+2.0
3,803,580	-		Pf1N1B4_3412	0.84	-1.0
3,803,580	-		Pf1N1B4_3412	0.84	-0.7
3,803,580	-		Pf1N1B4_3412	0.84	-0.2
3,803,580	-		Pf1N1B4_3412	0.84	-2.9
3,803,580	-		Pf1N1B4_3412	0.84	-1.9
3,803,734	+				+0.0
3,803,734	+				-1.5
3,803,734	+				-1.5
3,803,734	+				+0.8
3,803,734	+				+1.1
3,803,735	-				-1.9
3,803,735	-				+0.4
3,803,735	-				-0.5
3,803,735	-				+1.1
3,803,735	-				-0.9
3,803,735	-				+0.1
3,803,735	-				-0.2
3,803,735	-				+0.8
3,803,808	-				-1.2
3,804,308	+		Pf1N1B4_3413	0.61	+2.9
3,804,308	+		Pf1N1B4_3413	0.61	+1.1
3,804,439	+		Pf1N1B4_3413	0.76	-0.9
3,804,465	+		Pf1N1B4_3413	0.79	+0.5
3,804,465	+				-0.9
3,804,817	+		Pf1N1B4_3414	0.63	-1.0
3,804,818	-		Pf1N1B4_3414	0.64	+3.1
3,804,818	-		Pf1N1B4_3414	0.64	+0.7
3,804,818	-		Pf1N1B4_3414	0.64	-0.6
3,804,944	+				+3.5
3,804,945	-				+0.1
3,804,946	+				-0.6
3,804,947	-				-0.9
3,804,990	+				-1.2
3,804,991	-				+0.1
3,804,991	-				+0.7
3,804,995	-				-1.0
3,805,060	-				-0.5
3,805,060	-				+0.4
3,805,248	-		Pf1N1B4_3415	0.33	+1.8
3,805,515	+		Pf1N1B4_3415	0.77	+3.1
3,805,515	+		Pf1N1B4_3415	0.77	+2.7
3,805,515	+		Pf1N1B4_3415	0.77	+3.8
3,805,516	-		Pf1N1B4_3415	0.77	+1.3
3,805,516	-		Pf1N1B4_3415	0.77	+1.3
3,805,516	-		Pf1N1B4_3415	0.77	-0.2
3,805,528	+		Pf1N1B4_3415	0.79	+2.1