Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3392

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
3,784,331	+		Pf1N1B4_3390	0.13	+1.7
3,784,332	-		Pf1N1B4_3390	0.13	+0.6
3,784,332	-		Pf1N1B4_3390	0.13	-0.0
3,784,332	-		Pf1N1B4_3390	0.13	-0.4
3,784,359	-		Pf1N1B4_3390	0.18	+1.6
3,784,359	-		Pf1N1B4_3390	0.18	-1.3
3,784,897	+		Pf1N1B4_3391	0.16	+0.6
3,784,897	+		Pf1N1B4_3391	0.16	-1.2
3,785,033	+				+0.6
3,785,093	-				-1.0
3,785,129	-				+1.7
3,785,129	-				+0.7
3,785,129	-				-1.2
3,785,297	+				+1.1
3,785,297	+				-2.2
3,785,298	-				-0.1
3,785,429	+				+0.3
3,785,512	+		Pf1N1B4_3392	0.14	-0.9
3,785,513	-		Pf1N1B4_3392	0.14	+0.1
3,785,534	-		Pf1N1B4_3392	0.15	+0.0
3,785,534	-		Pf1N1B4_3392	0.15	-0.4
3,785,534	-		Pf1N1B4_3392	0.15	+0.1
3,785,534	-		Pf1N1B4_3392	0.15	-1.7
3,785,566	+		Pf1N1B4_3392	0.18	-0.2
3,785,566	+		Pf1N1B4_3392	0.18	+0.6
3,785,566	+		Pf1N1B4_3392	0.18	+0.1
3,785,566	+		Pf1N1B4_3392	0.18	-1.2
3,785,566	+		Pf1N1B4_3392	0.18	-1.7
3,785,567	-		Pf1N1B4_3392	0.18	+0.9
3,785,567	-		Pf1N1B4_3392	0.18	-2.4
3,785,567	-				+3.1
3,785,605	+				+1.1
3,785,605	+		Pf1N1B4_3392	0.21	+1.1
3,785,605	+		Pf1N1B4_3392	0.21	-0.9
3,785,606	-		Pf1N1B4_3392	0.21	-0.6
3,785,606	-		Pf1N1B4_3392	0.21	+0.3
3,785,620	+		Pf1N1B4_3392	0.22	-0.9
3,785,621	-				+0.1
3,785,621	-				-1.7
3,785,632	+		Pf1N1B4_3392	0.23	-2.0
3,785,632	+		Pf1N1B4_3392	0.23	+1.7
3,785,671	+		Pf1N1B4_3392	0.26	+0.6
3,785,671	+		Pf1N1B4_3392	0.26	-0.9
3,785,695	+		Pf1N1B4_3392	0.27	-0.4
3,785,696	-		Pf1N1B4_3392	0.28	-0.0
3,785,807	-		Pf1N1B4_3392	0.36	-0.7
3,785,807	-		Pf1N1B4_3392	0.36	+0.2
3,785,884	+		Pf1N1B4_3392	0.42	-0.9
3,785,885	-		Pf1N1B4_3392	0.42	+0.3
3,785,885	-		Pf1N1B4_3392	0.42	+0.1
3,786,167	-		Pf1N1B4_3392	0.63	-0.7
3,786,184	+		Pf1N1B4_3392	0.64	-0.5
3,786,235	+		Pf1N1B4_3392	0.68	-0.0
3,786,235	+		Pf1N1B4_3392	0.68	-0.9
3,786,235	+		Pf1N1B4_3392	0.68	+2.7
3,786,235	+		Pf1N1B4_3392	0.68	-1.4
3,786,235	+		Pf1N1B4_3392	0.68	-0.4
3,786,236	-		Pf1N1B4_3392	0.68	-0.4
3,786,298	+		Pf1N1B4_3392	0.72	+1.1
3,786,298	+		Pf1N1B4_3392	0.72	+0.1
3,786,299	-		Pf1N1B4_3392	0.72	-2.4
3,786,313	+		Pf1N1B4_3392	0.73	+0.4
3,786,314	-		Pf1N1B4_3392	0.74	-1.9
3,786,314	-		Pf1N1B4_3392	0.74	-1.0
3,786,342	+		Pf1N1B4_3392	0.76	+0.1
3,786,343	-		Pf1N1B4_3392	0.76	-1.2
3,786,343	-		Pf1N1B4_3392	0.76	-0.1
3,786,406	+		Pf1N1B4_3392	0.80	-0.9
3,786,406	+		Pf1N1B4_3392	0.80	-0.4
3,786,406	+		Pf1N1B4_3392	0.80	-1.2
3,786,407	-		Pf1N1B4_3392	0.80	+2.0
3,786,407	-		Pf1N1B4_3392	0.80	-1.4
3,786,407	-		Pf1N1B4_3392	0.80	+0.4
3,786,547	+				+0.4
3,786,658	+				+0.7
3,786,658	+				-0.6
3,786,658	+				-0.2
3,786,658	+				-1.4
3,786,658	+				+0.8
3,786,658	+				+0.1
3,786,658	+				+0.1
3,786,658	+				-0.4
3,786,658	+				+0.7
3,786,658	+				+1.0
3,786,659	-				+1.2
3,786,659	-				-0.0
3,786,659	-				+1.4
3,786,667	+				+0.2
3,786,667	+				+1.4
3,786,667	+				-0.2
3,786,668	-				-1.9
3,786,668	-				+0.1
3,786,686	+				+0.1
3,786,687	-				-1.0
3,786,772	+				+0.7
3,786,773	-				+0.1
3,786,779	+				-1.2
3,786,780	-				-1.7
3,786,794	+				-1.7
3,786,794	+				+2.7
3,786,795	-				-1.9
3,787,047	+		Pf1N1B4_3393	0.20	-0.4
3,787,047	+		Pf1N1B4_3393	0.20	-2.9
3,787,048	-		Pf1N1B4_3393	0.20	-0.9
3,787,048	-		Pf1N1B4_3393	0.20	-0.9
3,787,098	+		Pf1N1B4_3393	0.25	-1.9
3,787,098	+		Pf1N1B4_3393	0.25	-0.4
3,787,099	-		Pf1N1B4_3393	0.25	-0.7
3,787,190	-		Pf1N1B4_3393	0.33	-0.9
3,787,366	+		Pf1N1B4_3393	0.49	+0.7
3,787,367	-		Pf1N1B4_3393	0.49	-0.1
3,787,367	-		Pf1N1B4_3393	0.49	-0.4
3,787,367	-		Pf1N1B4_3393	0.49	-1.4
3,787,482	+		Pf1N1B4_3393	0.59	+1.5
3,787,492	-		Pf1N1B4_3393	0.60	-1.2
3,787,499	+		Pf1N1B4_3393	0.60	-1.7
3,787,499	+		Pf1N1B4_3393	0.60	-0.1
3,787,500	-		Pf1N1B4_3393	0.61	-1.7
3,787,503	+		Pf1N1B4_3393	0.61	-2.9
3,787,503	+		Pf1N1B4_3393	0.61	+3.1
3,787,504	-		Pf1N1B4_3393	0.61	+2.1
3,787,504	-		Pf1N1B4_3393	0.61	-0.4
3,787,552	+		Pf1N1B4_3393	0.65	+1.8
3,787,552	+		Pf1N1B4_3393	0.65	-0.2
3,787,653	+		Pf1N1B4_3393	0.74	+1.0
3,787,653	+		Pf1N1B4_3393	0.74	-0.7