Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3373

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
3,758,878	+				-0.2
3,758,879	-				-1.4
3,758,879	-				-1.7
3,758,957	+				-1.0
3,758,957	+				-0.9
3,758,958	-				-1.4
3,758,958	-				-0.8
3,758,958	-				+1.3
3,758,963	+				-1.7
3,758,963	+				-0.9
3,758,964	-				-0.9
3,758,964	-				-0.6
3,758,964	-				+1.1
3,758,967	-				-1.3
3,758,974	+				-1.4
3,758,974	+				-0.9
3,758,975	-				-1.7
3,758,975	-				-0.4
3,758,975	-				-0.2
3,758,975	-				-1.6
3,759,013	+				-0.4
3,759,014	-				-1.1
3,759,014	-				+0.7
3,759,068	+				+0.8
3,759,111	+				-1.2
3,759,111	+				-1.2
3,759,111	+				-0.7
3,759,111	+				+1.1
3,759,112	-				-1.7
3,759,112	-				-2.0
3,759,112	-				-2.0
3,759,114	+				-0.3
3,759,114	+				+2.7
3,759,114	+				+0.0
3,759,114	+				+1.4
3,759,114	+				-0.4
3,759,114	+				+2.7
3,759,114	+				-1.7
3,759,114	+				+0.1
3,759,114	+				-0.3
3,759,114	+				-1.4
3,759,114	+				-2.3
3,759,115	-				-1.7
3,759,115	-				-0.3
3,759,115	-				+0.9
3,759,115	-				+1.4
3,759,115	-				+0.9
3,759,115	-				-1.0
3,759,115	-				-1.9
3,759,115	-				-0.7
3,759,115	-				+2.6
3,759,115	-				-1.2
3,759,115	-				+2.0
3,759,119	-				+0.8
3,759,133	-				-0.4
3,759,328	+				+1.1
3,759,561	+		Pf1N1B4_3372	0.47	-0.2
3,759,561	+		Pf1N1B4_3372	0.47	-2.6
3,759,562	-		Pf1N1B4_3372	0.47	-3.2
3,759,589	+		Pf1N1B4_3372	0.53	-0.3
3,759,606	-		Pf1N1B4_3372	0.56	-1.2
3,759,683	+				+3.1
3,759,920	-				-1.4
3,760,108	-		Pf1N1B4_3373	0.26	+0.7
3,760,377	+		Pf1N1B4_3373	0.51	-1.7
3,760,377	+		Pf1N1B4_3373	0.51	-2.2
3,760,378	-		Pf1N1B4_3373	0.51	-2.1
3,760,378	-		Pf1N1B4_3373	0.51	+0.1
3,760,617	+		Pf1N1B4_3373	0.74	-2.4
3,760,748	+				-0.9
3,760,748	+		Pf1N1B4_3373	0.86	-1.2
3,760,748	+		Pf1N1B4_3373	0.86	+0.6
3,760,748	+		Pf1N1B4_3373	0.86	-1.2
3,760,818	+				-0.4
3,760,819	-				+1.1
3,760,888	-				+0.1
3,760,920	+				+0.9
3,760,923	-				-0.3
3,760,986	+				+0.1
3,760,986	+				+0.7
3,760,986	+				-0.4
3,760,986	+				-1.4
3,760,987	-				+0.6
3,760,987	-				-0.6
3,760,999	+				-2.6
3,760,999	+				-0.9
3,761,000	-				+1.1
3,761,000	-				+1.0
3,761,012	+				-0.1
3,761,012	+				+0.3
3,761,012	+				+0.8
3,761,035	+				+0.1
3,761,035	+				-2.2
3,761,036	-				+1.1
3,761,036	-				-1.7
3,761,036	-				+0.1
3,761,039	+				-2.2
3,761,039	+				+0.5
3,761,039	+				+2.0
3,761,039	+				-0.4
3,761,039	+				-2.0
3,761,039	+				+0.1
3,761,039	+				-2.6
3,761,040	-				-0.9
3,761,040	-				+0.8
3,761,040	-				-2.0
3,761,068	+				-0.2
3,761,068	+				+1.5
3,761,069	-				-0.2
3,761,298	+		Pf1N1B4_3374	0.28	-0.0
3,761,444	+		Pf1N1B4_3374	0.43	+0.3
3,761,444	+		Pf1N1B4_3374	0.43	-1.7
3,761,445	-		Pf1N1B4_3374	0.43	+1.9
3,761,445	-		Pf1N1B4_3374	0.43	-2.2
3,761,445	-				+1.1
3,761,544	+				+1.6
3,761,544	+		Pf1N1B4_3374	0.53	-1.4
3,761,544	+		Pf1N1B4_3374	0.53	+1.7
3,761,545	-		Pf1N1B4_3374	0.53	+1.3
3,761,595	-		Pf1N1B4_3374	0.58	-0.7
3,761,596	+				+1.1
3,761,597	-		Pf1N1B4_3374	0.58	+0.6
3,761,843	-		Pf1N1B4_3374	0.84	-1.2
3,761,843	-		Pf1N1B4_3374	0.84	+1.0