Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3257

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
3,645,434	-		Pf1N1B4_3256	0.19	-1.7
3,645,725	+		Pf1N1B4_3256	0.52	+0.5
3,645,725	+		Pf1N1B4_3256	0.52	+0.5
3,645,725	+		Pf1N1B4_3256	0.52	+1.0
3,645,725	+				+0.3
3,645,726	-		Pf1N1B4_3256	0.52	-1.0
3,645,726	-		Pf1N1B4_3256	0.52	+0.4
3,645,793	+		Pf1N1B4_3256	0.60	+0.4
3,645,793	+		Pf1N1B4_3256	0.60	+0.4
3,645,793	+		Pf1N1B4_3256	0.60	+0.3
3,645,793	+		Pf1N1B4_3256	0.60	+2.4
3,645,793	+		Pf1N1B4_3256	0.60	+1.3
3,645,793	+		Pf1N1B4_3256	0.60	+2.1
3,645,793	+				-0.7
3,645,794	-		Pf1N1B4_3256	0.60	+0.3
3,645,794	-				+2.3
3,645,794	-		Pf1N1B4_3256	0.60	-0.6
3,645,794	-		Pf1N1B4_3256	0.60	-0.4
3,645,794	-		Pf1N1B4_3256	0.60	-0.0
3,645,794	-		Pf1N1B4_3256	0.60	-0.0
3,645,826	+		Pf1N1B4_3256	0.64	+0.5
3,645,826	+		Pf1N1B4_3256	0.64	-0.7
3,645,826	+		Pf1N1B4_3256	0.64	-0.9
3,645,826	+		Pf1N1B4_3256	0.64	-0.1
3,645,826	+		Pf1N1B4_3256	0.64	-1.0
3,645,826	+		Pf1N1B4_3256	0.64	-0.0
3,645,826	+		Pf1N1B4_3256	0.64	-1.0
3,645,826	+		Pf1N1B4_3256	0.64	-0.8
3,645,826	+		Pf1N1B4_3256	0.64	+0.1
3,645,826	+		Pf1N1B4_3256	0.64	-1.5
3,645,826	+		Pf1N1B4_3256	0.64	-1.2
3,645,826	+		Pf1N1B4_3256	0.64	-0.2
3,645,826	+		Pf1N1B4_3256	0.64	+0.5
3,645,826	+		Pf1N1B4_3256	0.64	-2.2
3,645,826	+		Pf1N1B4_3256	0.64	+1.1
3,645,826	+		Pf1N1B4_3256	0.64	-0.0
3,645,826	+		Pf1N1B4_3256	0.64	+1.3
3,645,826	+		Pf1N1B4_3256	0.64	-1.0
3,645,826	+		Pf1N1B4_3256	0.64	-1.1
3,645,826	+		Pf1N1B4_3256	0.64	-1.0
3,645,826	+		Pf1N1B4_3256	0.64	+0.4
3,645,826	+		Pf1N1B4_3256	0.64	+1.5
3,645,826	+		Pf1N1B4_3256	0.64	-0.3
3,645,827	-		Pf1N1B4_3256	0.64	+1.7
3,645,827	-				+0.3
3,645,827	-		Pf1N1B4_3256	0.64	-0.7
3,645,827	-		Pf1N1B4_3256	0.64	+1.6
3,645,827	-		Pf1N1B4_3256	0.64	-2.0
3,646,205	+				-2.4
3,646,205	+				-0.3
3,646,206	-				+2.0
3,646,206	-				-0.3
3,646,212	+				-0.3
3,646,213	-				-2.4
3,646,289	+				+1.3
3,646,289	+				+0.5
3,646,289	+				+0.7
3,646,289	+				-1.3
3,646,290	-				+0.9
3,646,290	-				+0.8
3,646,298	+				+1.6
3,646,298	+				+0.5
3,646,299	-				+0.5
3,646,371	+				-0.7
3,646,463	-				-0.7
3,646,463	-		Pf1N1B4_3257	0.12	+2.1
3,646,463	-		Pf1N1B4_3257	0.12	+0.1
3,646,463	-		Pf1N1B4_3257	0.12	-0.7
3,646,546	+		Pf1N1B4_3257	0.19	-1.6
3,646,546	+		Pf1N1B4_3257	0.19	+1.7
3,646,547	-				+1.3
3,646,547	-		Pf1N1B4_3257	0.20	-1.2
3,646,547	-		Pf1N1B4_3257	0.20	-1.3
3,646,555	+		Pf1N1B4_3257	0.20	+0.7
3,646,765	+				+1.7
3,646,765	+		Pf1N1B4_3257	0.39	+0.8
3,646,765	+		Pf1N1B4_3257	0.39	+0.2
3,646,771	+		Pf1N1B4_3257	0.40	+0.6
3,646,771	+		Pf1N1B4_3257	0.40	-1.0
3,646,772	-		Pf1N1B4_3257	0.40	-0.5
3,646,772	-		Pf1N1B4_3257	0.40	-0.3
3,646,807	+				+0.3
3,646,808	-		Pf1N1B4_3257	0.43	-0.9
3,646,808	-		Pf1N1B4_3257	0.43	+1.3
3,646,808	-		Pf1N1B4_3257	0.43	+2.9
3,646,808	-		Pf1N1B4_3257	0.43	+0.1
3,646,858	+		Pf1N1B4_3257	0.48	+1.1
3,647,044	+		Pf1N1B4_3257	0.65	+0.6
3,647,045	-		Pf1N1B4_3257	0.65	-1.3
3,647,045	-		Pf1N1B4_3257	0.65	+0.7
3,647,045	-		Pf1N1B4_3257	0.65	+1.5
3,647,050	+		Pf1N1B4_3257	0.65	+0.3
3,647,051	-				-0.3
3,647,051	-		Pf1N1B4_3257	0.66	+1.3
3,647,051	-		Pf1N1B4_3257	0.66	-0.5
3,647,305	+				+1.9
3,647,305	+		Pf1N1B4_3257	0.89	-0.9
3,647,306	-		Pf1N1B4_3257	0.89	+1.0
3,647,306	-		Pf1N1B4_3257	0.89	-0.3
3,647,384	+				-1.7
3,647,384	+				-0.0
3,647,385	-				-0.3
3,647,385	-				-0.7
3,647,441	+				-1.9
3,647,554	-		Pf1N1B4_3258	0.39	-2.0
3,647,554	-		Pf1N1B4_3258	0.39	+1.3
3,647,568	+		Pf1N1B4_3258	0.44	-1.5
3,647,568	+		Pf1N1B4_3258	0.44	-0.3
3,647,568	+		Pf1N1B4_3258	0.44	+1.3
3,647,569	-		Pf1N1B4_3258	0.44	-0.5
3,647,569	-		Pf1N1B4_3258	0.44	+1.7
3,647,583	+		Pf1N1B4_3258	0.48	+1.3
3,647,584	-		Pf1N1B4_3258	0.48	+0.1
3,647,619	+		Pf1N1B4_3258	0.59	-1.5
3,647,620	-		Pf1N1B4_3258	0.59	+2.3
3,647,631	+		Pf1N1B4_3258	0.63	+0.1
3,647,632	-		Pf1N1B4_3258	0.63	-0.5
3,647,632	-		Pf1N1B4_3258	0.63	-0.0
3,647,632	-		Pf1N1B4_3258	0.63	+2.6
3,647,632	-		Pf1N1B4_3258	0.63	-2.5
3,647,699	+		Pf1N1B4_3258	0.83	+2.6
3,647,700	-		Pf1N1B4_3258	0.84	+0.4
3,647,813	+				+1.3
3,647,835	-				+0.0
3,647,970	-				+0.0
3,647,970	-				+3.3
3,647,988	-				-1.2
3,647,988	-				+1.4
3,647,988	-				-1.1
3,647,988	-				+1.9
3,648,108	-		Pf1N1B4_3259	0.20	+1.4
3,648,119	+		Pf1N1B4_3259	0.22	-0.7
3,648,302	-		Pf1N1B4_3259	0.53	-0.5
3,648,302	-				-0.3
3,648,387	+		Pf1N1B4_3259	0.68	-1.1
3,648,387	+		Pf1N1B4_3259	0.68	+1.1
3,648,387	+		Pf1N1B4_3259	0.68	-1.3
3,648,387	+		Pf1N1B4_3259	0.68	+0.0
3,648,387	+		Pf1N1B4_3259	0.68	+0.5
3,648,388	-		Pf1N1B4_3259	0.68	-1.3
3,648,388	-		Pf1N1B4_3259	0.68	-0.1
3,648,388	-		Pf1N1B4_3259	0.68	+0.9
3,648,388	-		Pf1N1B4_3259	0.68	+0.3
3,648,388	-				+0.3
3,648,388	-		Pf1N1B4_3259	0.68	+0.9