Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3234

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
3,619,920	-		Pf1N1B4_3232	0.78	+0.3
3,619,978	+		Pf1N1B4_3232	0.85	-0.3
3,619,978	+		Pf1N1B4_3232	0.85	+1.3
3,619,978	+				-0.3
3,619,979	-		Pf1N1B4_3232	0.85	+0.3
3,619,979	-		Pf1N1B4_3232	0.85	-1.9
3,620,038	+				+1.9
3,620,038	+				-1.1
3,620,038	+				-0.2
3,620,038	+				+0.3
3,620,038	+				-1.9
3,620,038	+				+1.0
3,620,038	+				-2.6
3,620,039	-				+0.3
3,620,039	-				-0.0
3,620,039	-				+1.3
3,620,039	-				-1.2
3,620,104	+				-0.5
3,620,104	+				-0.7
3,620,104	+				-1.3
3,620,105	-				-0.3
3,620,105	-				-1.2
3,620,105	-				+0.1
3,620,112	+				+0.4
3,620,112	+				-0.7
3,620,112	+				-1.1
3,620,113	-				+2.7
3,620,113	-				-0.1
3,620,113	-				+0.9
3,620,113	-				-0.3
3,620,113	-				-1.3
3,620,113	-				+2.3
3,620,113	-				+1.3
3,620,239	+		Pf1N1B4_3233	0.17	+0.3
3,620,239	+				+0.3
3,620,239	+		Pf1N1B4_3233	0.17	+0.5
3,620,239	+		Pf1N1B4_3233	0.17	+1.7
3,620,240	-		Pf1N1B4_3233	0.17	-0.2
3,620,240	-		Pf1N1B4_3233	0.17	+0.0
3,620,240	-		Pf1N1B4_3233	0.17	-1.1
3,620,250	+		Pf1N1B4_3233	0.18	-1.1
3,620,250	+		Pf1N1B4_3233	0.18	-1.7
3,620,250	+		Pf1N1B4_3233	0.18	-0.1
3,620,250	+		Pf1N1B4_3233	0.18	-0.3
3,620,250	+		Pf1N1B4_3233	0.18	+0.3
3,620,251	-		Pf1N1B4_3233	0.19	+0.9
3,620,251	-		Pf1N1B4_3233	0.19	-0.6
3,620,251	-		Pf1N1B4_3233	0.19	+3.4
3,620,284	+		Pf1N1B4_3233	0.23	+0.0
3,620,455	-		Pf1N1B4_3233	0.45	+1.9
3,620,455	-		Pf1N1B4_3233	0.45	+0.8
3,620,524	+		Pf1N1B4_3233	0.54	-0.1
3,620,525	-		Pf1N1B4_3233	0.54	+1.3
3,620,897	+				-0.5
3,620,897	+				-1.8
3,620,897	+				+1.3
3,620,897	+				+1.0
3,620,897	+				+0.6
3,620,897	+				+1.3
3,620,897	+				+0.8
3,620,897	+				+2.3
3,620,898	-				+1.4
3,620,898	-				-0.1
3,620,898	-				-0.1
3,620,898	-				-0.7
3,620,899	+				-0.2
3,620,899	+				+1.3
3,620,899	+				+0.8
3,620,899	+				+0.2
3,620,899	+				-2.2
3,620,899	+				-0.5
3,620,900	-				+1.4
3,620,900	-				-0.7
3,620,900	-				-2.5
3,621,084	+		Pf1N1B4_3234	0.17	+0.7
3,621,084	+		Pf1N1B4_3234	0.17	-1.7
3,621,084	+		Pf1N1B4_3234	0.17	-1.7
3,621,085	-		Pf1N1B4_3234	0.17	-0.3
3,621,726	+				+3.3
3,621,726	+		Pf1N1B4_3234	0.70	-2.3
3,621,726	+		Pf1N1B4_3234	0.70	-0.3
3,621,726	+		Pf1N1B4_3234	0.70	-1.5
3,621,727	-		Pf1N1B4_3234	0.70	-1.7
3,621,982	-				+0.3
3,622,104	+				-2.6
3,622,105	-				-2.2
3,622,116	+				-0.5
3,622,119	+				-0.7
3,622,119	+				+1.3
3,622,119	+				-1.9
3,622,120	-				-0.3
3,622,138	-				-0.7
3,622,138	-				-0.3
3,622,190	+				+0.3
3,622,190	+				-1.5
3,622,191	-				+0.7
3,622,206	-				+0.3
3,622,365	+				+1.9
3,622,365	+		Pf1N1B4_3235	0.32	-2.2
3,622,365	+		Pf1N1B4_3235	0.32	+0.6
3,622,366	-		Pf1N1B4_3235	0.32	-1.0
3,622,366	-		Pf1N1B4_3235	0.32	+0.5
3,622,366	-		Pf1N1B4_3235	0.32	+0.7
3,622,664	+		Pf1N1B4_3235	0.74	-0.3
3,622,664	+		Pf1N1B4_3235	0.74	-0.5
3,622,664	+		Pf1N1B4_3235	0.74	-1.3
3,622,664	+		Pf1N1B4_3235	0.74	+0.3
3,622,665	-		Pf1N1B4_3235	0.75	-0.9
3,622,665	-		Pf1N1B4_3235	0.75	-1.7
3,622,665	-		Pf1N1B4_3235	0.75	-0.2
3,622,665	-		Pf1N1B4_3235	0.75	+0.7
3,622,665	-		Pf1N1B4_3235	0.75	+0.1
3,622,665	-		Pf1N1B4_3235	0.75	-1.0
3,622,692	-		Pf1N1B4_3235	0.78	+0.5
3,622,692	-		Pf1N1B4_3235	0.78	-1.3
3,622,703	+		Pf1N1B4_3235	0.80	-1.3
3,622,778	+				+0.4
3,622,779	-				-0.2
3,622,841	+				-1.8
3,622,841	+				-0.5
3,622,841	+				+2.9
3,622,841	+				-1.1
3,622,841	+				-0.3
3,622,841	+				-0.7
3,622,842	-				-1.2
3,622,842	-				-1.7
3,622,842	-				-0.4
3,622,884	+				-3.0
3,622,885	-				+1.3
3,622,885	-				-0.7
3,623,043	+		Pf1N1B4_3236	0.35	-1.5
3,623,043	+		Pf1N1B4_3236	0.35	+1.0
3,623,043	+		Pf1N1B4_3236	0.35	+0.3
3,623,043	+		Pf1N1B4_3236	0.35	+1.3
3,623,044	-		Pf1N1B4_3236	0.35	-0.7
3,623,044	-		Pf1N1B4_3236	0.35	-1.3
3,623,044	-		Pf1N1B4_3236	0.35	-0.7