Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3148

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
3,528,743	+				-0.5
3,528,744	-				-1.9
3,528,744	-				+0.4
3,528,791	+				-2.1
3,528,791	+				+1.9
3,528,791	+				-1.1
3,528,792	-				-0.2
3,528,792	-				-1.1
3,528,792	-				-2.1
3,528,792	-				+0.4
3,528,810	+				-0.3
3,528,813	+				-0.3
3,528,813	+				-2.1
3,528,814	-				+1.8
3,528,814	-				+0.2
3,528,814	-				+1.6
3,528,814	-				-0.8
3,528,814	-				-0.9
3,528,818	+				-2.1
3,528,819	-				-0.3
3,528,819	-				+0.2
3,528,965	+		Pf1N1B4_3146	0.18	-1.6
3,529,058	+		Pf1N1B4_3146	0.66	-3.2
3,529,126	-				-2.3
3,529,293	+		Pf1N1B4_3147	0.40	-1.6
3,529,293	+		Pf1N1B4_3147	0.40	-1.3
3,529,294	-		Pf1N1B4_3147	0.40	-2.8
3,529,294	-		Pf1N1B4_3147	0.40	-3.3
3,529,294	-		Pf1N1B4_3147	0.40	-1.3
3,529,378	+		Pf1N1B4_3147	0.60	-0.2
3,529,378	+		Pf1N1B4_3147	0.60	-2.2
3,529,378	+		Pf1N1B4_3147	0.60	-0.6
3,529,378	+		Pf1N1B4_3147	0.60	-0.8
3,529,378	+		Pf1N1B4_3147	0.60	-1.0
3,529,378	+		Pf1N1B4_3147	0.60	-1.9
3,529,378	+		Pf1N1B4_3147	0.60	-1.8
3,529,379	-		Pf1N1B4_3147	0.60	-0.2
3,529,379	-		Pf1N1B4_3147	0.60	-3.7
3,529,379	-		Pf1N1B4_3147	0.60	-0.6
3,529,379	-		Pf1N1B4_3147	0.60	-1.8
3,529,379	-		Pf1N1B4_3147	0.60	-1.8
3,529,379	-		Pf1N1B4_3147	0.60	-1.3
3,529,379	-		Pf1N1B4_3147	0.60	-1.1
3,529,379	-		Pf1N1B4_3147	0.60	-1.0
3,529,379	-		Pf1N1B4_3147	0.60	-2.7
3,529,380	+		Pf1N1B4_3147	0.60	+0.8
3,529,380	+		Pf1N1B4_3147	0.60	-3.7
3,529,380	+		Pf1N1B4_3147	0.60	+0.5
3,529,381	-		Pf1N1B4_3147	0.60	-1.8
3,529,381	-		Pf1N1B4_3147	0.60	-1.6
3,529,381	-		Pf1N1B4_3147	0.60	-0.8
3,529,381	-		Pf1N1B4_3147	0.60	-2.1
3,529,436	+		Pf1N1B4_3147	0.73	-2.0
3,529,437	-		Pf1N1B4_3147	0.73	-0.6
3,529,437	-		Pf1N1B4_3147	0.73	-2.3
3,529,437	-		Pf1N1B4_3147	0.73	-0.8
3,529,437	-		Pf1N1B4_3147	0.73	-1.4
3,529,437	-		Pf1N1B4_3147	0.73	-1.3
3,529,538	-				-2.7
3,529,618	+				-0.3
3,529,618	+				-1.1
3,529,618	+				-1.8
3,529,618	+				-1.8
3,529,618	+				-1.3
3,529,618	+				-1.6
3,529,619	-				-0.3
3,529,620	+				+0.2
3,529,621	-				+0.7
3,529,621	-				-0.2
3,529,621	-				-0.5
3,529,621	-				-0.6
3,529,681	+				+0.3
3,529,681	+				+0.2
3,529,869	+		Pf1N1B4_3148	0.17	-0.3
3,529,870	-		Pf1N1B4_3148	0.18	+1.4
3,529,927	+		Pf1N1B4_3148	0.25	+0.9
3,530,063	+		Pf1N1B4_3148	0.44	-1.6
3,530,064	-		Pf1N1B4_3148	0.44	-0.1
3,530,064	-		Pf1N1B4_3148	0.44	+1.5
3,530,084	+				+0.2
3,530,105	-		Pf1N1B4_3148	0.49	-0.3
3,530,360	+		Pf1N1B4_3148	0.83	-1.9
3,530,360	+		Pf1N1B4_3148	0.83	+1.6
3,530,360	+		Pf1N1B4_3148	0.83	-0.8
3,530,361	-		Pf1N1B4_3148	0.84	-0.3
3,530,384	+		Pf1N1B4_3148	0.87	-0.1
3,530,385	-		Pf1N1B4_3148	0.87	+0.6
3,530,454	+				-0.3
3,530,454	+				-0.1
3,530,454	+				-1.1
3,530,454	+				+0.2
3,530,454	+				-1.1
3,530,493	+				+1.0
3,530,610	+		Pf1N1B4_3149	0.31	-2.3
3,530,611	-		Pf1N1B4_3149	0.32	-0.3
3,530,611	-		Pf1N1B4_3149	0.32	-1.3
3,530,731	+				-0.8
3,530,731	+				-0.2
3,530,731	+				-0.8
3,530,732	-				+0.6
3,530,732	-				-0.3
3,530,732	-				-0.6
3,530,732	-				-0.1
3,530,885	+		Pf1N1B4_3150	0.25	+1.7
3,530,886	-		Pf1N1B4_3150	0.25	-0.3
3,531,244	+		Pf1N1B4_3150	0.80	-0.1
3,531,370	+				-0.5
3,531,370	+				+2.7
3,531,370	+				+2.1
3,531,370	+				-0.8
3,531,370	+				-0.1
3,531,370	+				-1.3
3,531,379	-				+1.6
3,531,411	+				-0.9
3,531,411	+				+1.9
3,531,411	+				+1.4
3,531,443	-				-0.3
3,531,447	+				+1.2
3,531,447	+				-0.3
3,531,447	+				+1.4
3,531,447	+				-0.2
3,531,448	-				-0.3
3,531,448	-				-0.1
3,531,448	-				-1.6
3,531,448	-				+0.8
3,531,448	-				+3.1
3,531,448	-				+0.5