Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_313

Experiment: Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_312 and Pf1N1B4_313 are separated by 151 nucleotidesPf1N1B4_313 and Pf1N1B4_314 are separated by 200 nucleotides Pf1N1B4_312 - Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-), at 365,145 to 367,796 _312 Pf1N1B4_313 - Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1), at 367,948 to 368,493 _313 Pf1N1B4_314 - Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1), at 368,694 to 370,751 _314 Position (kb) 367 368 369Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 367.216 kb on + strand, within Pf1N1B4_312at 367.216 kb on + strand, within Pf1N1B4_312at 367.216 kb on + strand, within Pf1N1B4_312at 367.216 kb on + strand, within Pf1N1B4_312at 367.216 kb on + strand, within Pf1N1B4_312at 367.216 kb on + strand, within Pf1N1B4_312at 367.217 kb on - strand, within Pf1N1B4_312at 367.217 kb on - strand, within Pf1N1B4_312at 367.282 kb on + strand, within Pf1N1B4_312at 367.283 kb on - strand, within Pf1N1B4_312at 367.283 kb on - strand, within Pf1N1B4_312at 367.327 kb on - strand, within Pf1N1B4_312at 367.690 kb on + strandat 367.691 kb on - strandat 367.691 kb on - strandat 367.725 kb on + strandat 367.725 kb on + strandat 367.725 kb on + strandat 367.813 kb on - strandat 367.895 kb on + strandat 367.895 kb on + strandat 367.895 kb on + strandat 367.895 kb on + strandat 367.895 kb on + strandat 367.895 kb on + strandat 367.895 kb on + strandat 367.895 kb on + strandat 367.895 kb on + strandat 367.895 kb on + strandat 367.895 kb on + strandat 367.895 kb on + strandat 367.895 kb on + strandat 367.895 kb on + strandat 367.895 kb on + strandat 367.895 kb on + strandat 367.896 kb on - strandat 367.896 kb on - strandat 367.896 kb on - strandat 367.949 kb on + strandat 367.968 kb on + strandat 368.046 kb on + strand, within Pf1N1B4_313at 368.047 kb on - strand, within Pf1N1B4_313at 368.047 kb on - strand, within Pf1N1B4_313at 368.177 kb on - strand, within Pf1N1B4_313at 368.323 kb on + strand, within Pf1N1B4_313at 368.426 kb on + strand, within Pf1N1B4_313at 368.479 kb on + strandat 368.479 kb on + strandat 368.480 kb on - strandat 368.506 kb on + strandat 368.506 kb on + strandat 368.506 kb on + strandat 368.507 kb on - strandat 368.698 kb on - strandat 368.774 kb on - strandat 368.774 kb on - strandat 368.948 kb on - strand, within Pf1N1B4_314at 368.983 kb on + strand, within Pf1N1B4_314at 368.983 kb on + strand, within Pf1N1B4_314at 368.983 kb on + strand, within Pf1N1B4_314at 368.983 kb on + strand, within Pf1N1B4_314at 368.983 kb on + strand, within Pf1N1B4_314at 368.984 kb on - strand, within Pf1N1B4_314at 368.984 kb on - strand, within Pf1N1B4_314at 369.040 kb on - strand, within Pf1N1B4_314

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml
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367,216 + Pf1N1B4_312 0.78 +1.3
367,216 + Pf1N1B4_312 0.78 -0.1
367,216 + Pf1N1B4_312 0.78 -1.9
367,216 + Pf1N1B4_312 0.78 +1.9
367,216 + Pf1N1B4_312 0.78 -0.5
367,216 + Pf1N1B4_312 0.78 +0.6
367,217 - Pf1N1B4_312 0.78 -1.5
367,217 - Pf1N1B4_312 0.78 -1.3
367,282 + Pf1N1B4_312 0.81 -0.5
367,283 - Pf1N1B4_312 0.81 +0.4
367,283 - Pf1N1B4_312 0.81 -1.9
367,327 - Pf1N1B4_312 0.82 +0.1
367,690 + +2.1
367,691 - -0.3
367,691 - +0.8
367,725 + +0.6
367,725 + -0.1
367,725 + +1.9
367,813 - +0.1
367,895 + -0.3
367,895 + +1.9
367,895 + -1.2
367,895 + +1.1
367,895 + +0.4
367,895 + +0.5
367,895 + -0.7
367,895 + -0.5
367,895 + -1.2
367,895 + +0.8
367,895 + -1.9
367,895 + -0.3
367,895 + +1.4
367,895 + -0.9
367,895 + -1.8
367,895 + +1.7
367,896 - +0.1
367,896 - +1.1
367,896 - +0.5
367,949 + -0.9
367,968 + -1.2
368,046 + Pf1N1B4_313 0.18 -1.9
368,047 - Pf1N1B4_313 0.18 +1.1
368,047 - Pf1N1B4_313 0.18 -1.3
368,177 - Pf1N1B4_313 0.42 -2.5
368,323 + Pf1N1B4_313 0.69 +0.7
368,426 + Pf1N1B4_313 0.88 -0.8
368,479 + +0.5
368,479 + -0.9
368,480 - +0.3
368,506 + -0.3
368,506 + -2.8
368,506 + +0.1
368,507 - -3.0
368,698 - -1.7
368,774 - -0.9
368,774 - -2.2
368,948 - Pf1N1B4_314 0.12 -0.5
368,983 + Pf1N1B4_314 0.14 +1.3
368,983 + Pf1N1B4_314 0.14 -0.8
368,983 + Pf1N1B4_314 0.14 +1.7
368,983 + Pf1N1B4_314 0.14 +0.2
368,983 + Pf1N1B4_314 0.14 -3.0
368,984 - Pf1N1B4_314 0.14 -2.0
368,984 - Pf1N1B4_314 0.14 -2.7
369,040 - Pf1N1B4_314 0.17 -1.1

Or see this region's nucleotide sequence