Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2728

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
3,065,110	-		Pf1N1B4_2726	0.79	+1.9
3,065,110	-		Pf1N1B4_2726	0.79	-2.5
3,065,267	+				-0.3
3,065,299	+				-1.9
3,065,299	+				-1.4
3,065,299	+				+0.8
3,065,300	-				+0.2
3,065,300	-				-0.8
3,065,300	-				+1.0
3,065,300	-				+2.0
3,065,440	+		Pf1N1B4_2727	0.26	+1.4
3,065,440	+		Pf1N1B4_2727	0.26	-0.6
3,065,441	-		Pf1N1B4_2727	0.26	-0.8
3,065,441	-		Pf1N1B4_2727	0.26	+0.6
3,065,441	-		Pf1N1B4_2727	0.26	-1.9
3,065,533	-		Pf1N1B4_2727	0.48	-0.6
3,065,533	-		Pf1N1B4_2727	0.48	+1.0
3,065,533	-		Pf1N1B4_2727	0.48	-0.1
3,065,535	+		Pf1N1B4_2727	0.49	+2.4
3,065,535	+		Pf1N1B4_2727	0.49	+1.8
3,065,535	+		Pf1N1B4_2727	0.49	-0.6
3,065,536	-				-0.6
3,065,536	-		Pf1N1B4_2727	0.49	-0.2
3,065,588	-		Pf1N1B4_2727	0.61	+1.4
3,065,589	+		Pf1N1B4_2727	0.62	-0.6
3,065,589	+		Pf1N1B4_2727	0.62	-0.2
3,065,589	+		Pf1N1B4_2727	0.62	+0.1
3,065,590	-		Pf1N1B4_2727	0.62	-1.8
3,065,590	-		Pf1N1B4_2727	0.62	+1.7
3,065,717	+				-1.4
3,065,717	+				+0.1
3,065,717	+				+1.3
3,065,797	+				+0.3
3,065,797	+				+0.8
3,065,797	+				-1.4
3,065,797	+				+0.8
3,065,798	-				-0.3
3,065,798	-				-1.6
3,065,798	-				+1.6
3,065,819	-				+0.4
3,065,820	+				-1.2
3,065,820	+				-0.9
3,065,820	+				-1.9
3,065,821	-				-1.6
3,065,821	-				+0.8
3,065,821	-				+1.2
3,065,821	-				-2.2
3,065,821	-				-1.8
3,065,900	+				-1.1
3,066,314	-		Pf1N1B4_2728	0.19	-0.2
3,066,314	-		Pf1N1B4_2728	0.19	+0.2
3,066,314	-		Pf1N1B4_2728	0.19	+0.4
3,066,314	-		Pf1N1B4_2728	0.19	-1.4
3,066,396	+		Pf1N1B4_2728	0.22	+1.0
3,066,397	-		Pf1N1B4_2728	0.22	+1.9
3,066,443	+		Pf1N1B4_2728	0.24	-1.3
3,066,903	+		Pf1N1B4_2728	0.42	-2.1
3,067,017	+		Pf1N1B4_2728	0.46	-0.9
3,067,017	+		Pf1N1B4_2728	0.46	+0.8
3,067,017	+		Pf1N1B4_2728	0.46	+2.0
3,067,017	+		Pf1N1B4_2728	0.46	+0.4
3,067,017	+		Pf1N1B4_2728	0.46	+2.1
3,067,017	+		Pf1N1B4_2728	0.46	-0.6
3,067,018	-		Pf1N1B4_2728	0.47	-1.9
3,067,018	-		Pf1N1B4_2728	0.47	-0.9
3,067,018	-		Pf1N1B4_2728	0.47	-2.2
3,067,203	-		Pf1N1B4_2728	0.54	-0.0
3,067,452	+		Pf1N1B4_2728	0.64	-0.9
3,067,569	+		Pf1N1B4_2728	0.68	+2.1
3,067,570	-		Pf1N1B4_2728	0.68	+0.7
3,067,865	+		Pf1N1B4_2728	0.80	-1.8
3,067,961	+		Pf1N1B4_2728	0.84	-2.5
3,067,961	+		Pf1N1B4_2728	0.84	+0.7
3,068,000	+		Pf1N1B4_2728	0.86	-1.6
3,068,000	+		Pf1N1B4_2728	0.86	-0.8
3,068,000	+		Pf1N1B4_2728	0.86	+0.7
3,068,000	+		Pf1N1B4_2728	0.86	+3.0
3,068,000	+		Pf1N1B4_2728	0.86	-1.2
3,068,000	+		Pf1N1B4_2728	0.86	+0.2
3,068,091	+		Pf1N1B4_2728	0.89	+0.7
3,068,259	+				+2.4
3,068,259	+				-1.4
3,068,260	-				-1.4
3,068,260	-				+1.0
3,068,304	+				+0.7
3,068,361	+				-1.8
3,068,433	+				-0.2
3,068,433	+				-2.4
3,068,433	+				-0.6
3,068,433	+				-1.9
3,068,433	+				-0.0
3,068,433	+				+0.5
3,068,433	+				-1.8
3,068,433	+				-0.4
3,068,433	+				-1.6
3,068,433	+				-0.3
3,068,433	+				-1.2
3,068,433	+				+1.1
3,068,433	+				-0.2
3,068,433	+				+0.2
3,068,433	+				+0.8
3,068,433	+				+4.2
3,068,433	+				-1.4
3,068,433	+				-0.2
3,068,433	+				+1.4
3,068,433	+				+0.4
3,068,433	+				-0.9
3,068,433	+				-1.1
3,068,434	-				-0.4
3,068,434	-				-0.5
3,068,434	-				-1.2
3,068,434	-				-0.3
3,068,434	-				-0.4
3,068,434	-				-2.3
3,068,434	-				-0.8
3,068,434	-				+1.4
3,068,434	-				-0.9
3,068,434	-				+2.2
3,068,434	-				-1.2
3,068,434	-				+1.0
3,068,434	-				-2.3
3,068,434	-				+0.1
3,068,434	-				-0.4
3,068,434	-				+0.4
3,068,434	-				+0.6
3,068,434	-				-0.3
3,068,434	-				+1.0
3,068,434	-				-0.9
3,068,434	-				-2.4
3,068,434	-				-1.3
3,068,434	-				+3.0
3,068,434	-				+0.4
3,068,567	+				+1.9
3,068,567	+				-0.9
3,068,567	+				-1.3
3,068,567	+				+1.4
3,068,567	+				-0.1
3,068,567	+				+1.5
3,068,567	+				+0.6
3,068,567	+				-0.2
3,068,567	+				-0.2
3,068,567	+				-0.8
3,068,567	+				+0.2
3,068,568	-				-0.4
3,068,568	-				+0.1
3,068,615	-		Pf1N1B4_2729	0.10	+1.0
3,068,624	-		Pf1N1B4_2729	0.11	-0.9
3,068,624	-		Pf1N1B4_2729	0.11	-0.3
3,068,624	-		Pf1N1B4_2729	0.11	+0.7
3,068,732	-		Pf1N1B4_2729	0.21	-0.1
3,068,747	+		Pf1N1B4_2729	0.22	+1.1
3,068,747	+		Pf1N1B4_2729	0.22	+1.0
3,068,747	+		Pf1N1B4_2729	0.22	-0.9
3,068,747	+		Pf1N1B4_2729	0.22	+0.5
3,068,747	+		Pf1N1B4_2729	0.22	+1.5
3,068,747	+		Pf1N1B4_2729	0.22	+1.8
3,068,748	-		Pf1N1B4_2729	0.22	+3.0
3,068,748	-		Pf1N1B4_2729	0.22	+1.7
3,068,748	-		Pf1N1B4_2729	0.22	-0.2
3,068,748	-		Pf1N1B4_2729	0.22	+1.4
3,068,748	-		Pf1N1B4_2729	0.22	+1.4
3,068,748	-		Pf1N1B4_2729	0.22	-1.9
3,068,748	-				+0.4
3,068,748	-		Pf1N1B4_2729	0.22	-0.8
3,068,748	-		Pf1N1B4_2729	0.22	+1.0
3,068,748	-		Pf1N1B4_2729	0.22	+1.8
3,068,770	+		Pf1N1B4_2729	0.24	+0.8
3,068,771	-		Pf1N1B4_2729	0.25	-0.9
3,068,803	+		Pf1N1B4_2729	0.28	+1.7
3,068,866	+		Pf1N1B4_2729	0.33	-0.2
3,068,866	+		Pf1N1B4_2729	0.33	-1.6
3,068,866	+		Pf1N1B4_2729	0.33	+2.1
3,068,866	+		Pf1N1B4_2729	0.33	+1.1
3,068,866	+		Pf1N1B4_2729	0.33	-1.4
3,068,866	+		Pf1N1B4_2729	0.33	+1.7
3,068,867	-		Pf1N1B4_2729	0.33	+0.3
3,068,867	-				+2.7
3,068,867	-		Pf1N1B4_2729	0.33	-0.2
3,068,867	-		Pf1N1B4_2729	0.33	+0.1
3,068,867	-		Pf1N1B4_2729	0.33	+1.2
3,069,054	+		Pf1N1B4_2729	0.51	-1.9
3,069,124	+		Pf1N1B4_2729	0.57	+0.1
3,069,124	+		Pf1N1B4_2729	0.57	+0.9
3,069,229	+		Pf1N1B4_2729	0.67	-0.2