Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2673

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
3,009,484	+		Pf1N1B4_2672	0.50	+2.6
3,009,484	+		Pf1N1B4_2672	0.50	-0.5
3,009,484	+		Pf1N1B4_2672	0.50	-0.0
3,009,485	-		Pf1N1B4_2672	0.50	-0.3
3,009,485	-		Pf1N1B4_2672	0.50	-1.7
3,009,485	-		Pf1N1B4_2672	0.50	+1.6
3,009,485	-		Pf1N1B4_2672	0.50	+0.5
3,009,577	-		Pf1N1B4_2672	0.57	+0.8
3,009,577	-		Pf1N1B4_2672	0.57	+0.9
3,009,607	-		Pf1N1B4_2672	0.59	-0.6
3,009,607	-		Pf1N1B4_2672	0.59	+0.0
3,009,759	-		Pf1N1B4_2672	0.70	+1.4
3,009,782	-		Pf1N1B4_2672	0.71	+0.6
3,009,835	+		Pf1N1B4_2672	0.75	-0.5
3,009,835	+		Pf1N1B4_2672	0.75	-0.3
3,009,836	-		Pf1N1B4_2672	0.75	-3.3
3,009,836	-		Pf1N1B4_2672	0.75	-2.0
3,009,941	-		Pf1N1B4_2672	0.83	-0.6
3,009,998	+		Pf1N1B4_2672	0.87	-1.7
3,009,998	+		Pf1N1B4_2672	0.87	+1.4
3,009,999	-		Pf1N1B4_2672	0.87	+2.3
3,009,999	-		Pf1N1B4_2672	0.87	-0.3
3,010,009	+		Pf1N1B4_2672	0.88	+1.2
3,010,009	+				-0.1
3,010,009	+		Pf1N1B4_2672	0.88	+0.6
3,010,009	+		Pf1N1B4_2672	0.88	+0.7
3,010,009	+		Pf1N1B4_2672	0.88	-1.4
3,010,009	+		Pf1N1B4_2672	0.88	+0.5
3,010,009	+		Pf1N1B4_2672	0.88	+0.8
3,010,009	+		Pf1N1B4_2672	0.88	-0.1
3,010,009	+		Pf1N1B4_2672	0.88	+0.9
3,010,010	-		Pf1N1B4_2672	0.88	+0.8
3,010,010	-		Pf1N1B4_2672	0.88	+0.9
3,010,010	-		Pf1N1B4_2672	0.88	+0.4
3,010,088	-				-2.3
3,010,125	+				+0.9
3,010,125	+				-1.0
3,010,125	+				+0.1
3,010,125	+				-0.4
3,010,125	+				+2.4
3,010,125	+				-1.6
3,010,125	+				-0.2
3,010,125	+				+2.0
3,010,126	-				-0.1
3,010,126	-				+1.9
3,010,126	-				-0.9
3,010,126	-				+0.7
3,010,126	-				-0.1
3,010,126	-				-0.9
3,010,160	+				+0.0
3,010,160	+				-1.7
3,010,160	+				+0.4
3,010,160	+				+0.3
3,010,160	+				+0.9
3,010,161	-				+2.4
3,010,161	-				-0.1
3,010,161	-				+1.7
3,010,163	+				-1.7
3,010,163	+				+0.9
3,010,163	+				-1.7
3,010,164	-				-1.6
3,010,164	-				+1.2
3,010,164	-				-1.6
3,010,172	+				-1.1
3,010,172	+				+0.1
3,010,172	+				-0.2
3,010,172	+				+2.2
3,010,172	+				+1.6
3,010,173	-				-0.6
3,010,173	-				+0.4
3,010,173	-				-0.9
3,010,173	-				-0.9
3,010,193	-				-1.5
3,010,193	-				+1.6
3,010,280	+				+3.2
3,010,280	+				-0.6
3,010,280	+				-1.2
3,010,280	+				+1.0
3,010,280	+				+1.0
3,010,280	+				-0.4
3,010,281	-				-0.1
3,010,281	-				-1.1
3,010,291	+				-1.1
3,010,336	+				-0.6
3,010,417	+				-1.1
3,010,417	+				+0.4
3,010,417	+				+0.4
3,010,418	-				-0.2
3,010,418	-				+0.3
3,010,466	+				-0.6
3,010,467	-				-1.1
3,010,467	-				+0.7
3,010,467	-				+0.1
3,010,548	-				+1.4
3,010,583	+				+1.1
3,010,728	+		Pf1N1B4_2673	0.19	-1.7
3,010,729	-		Pf1N1B4_2673	0.19	+2.4
3,010,808	+		Pf1N1B4_2673	0.24	-0.6
3,010,808	+		Pf1N1B4_2673	0.24	-0.0
3,010,808	+		Pf1N1B4_2673	0.24	+1.7
3,010,808	+		Pf1N1B4_2673	0.24	-0.1
3,010,808	+		Pf1N1B4_2673	0.24	+1.4
3,010,808	+		Pf1N1B4_2673	0.24	+0.9
3,010,808	+		Pf1N1B4_2673	0.24	+1.4
3,010,808	+		Pf1N1B4_2673	0.24	-0.1
3,010,808	+		Pf1N1B4_2673	0.24	-1.6
3,010,808	+		Pf1N1B4_2673	0.24	+0.8
3,010,808	+		Pf1N1B4_2673	0.24	-0.1
3,010,808	+		Pf1N1B4_2673	0.24	+1.4
3,010,808	+		Pf1N1B4_2673	0.24	+1.7
3,010,808	+		Pf1N1B4_2673	0.24	-1.9
3,010,809	-		Pf1N1B4_2673	0.24	-1.9
3,010,809	-		Pf1N1B4_2673	0.24	-0.9
3,010,809	-		Pf1N1B4_2673	0.24	+0.4
3,010,809	-		Pf1N1B4_2673	0.24	-1.1
3,010,809	-		Pf1N1B4_2673	0.24	-1.9
3,010,809	-		Pf1N1B4_2673	0.24	+3.4
3,010,809	-		Pf1N1B4_2673	0.24	-2.0
3,010,809	-		Pf1N1B4_2673	0.24	+2.4
3,010,809	-		Pf1N1B4_2673	0.24	-0.5
3,010,809	-		Pf1N1B4_2673	0.24	-0.3
3,010,809	-		Pf1N1B4_2673	0.24	-0.9
3,010,811	+		Pf1N1B4_2673	0.25	+0.2
3,010,895	+		Pf1N1B4_2673	0.30	+0.4
3,011,019	-		Pf1N1B4_2673	0.38	-1.4
3,011,274	+		Pf1N1B4_2673	0.55	-0.1
3,011,412	+		Pf1N1B4_2673	0.64	+0.9
3,011,514	-		Pf1N1B4_2673	0.71	-0.4
3,011,820	+				+0.4
3,011,820	+				+1.4
3,011,821	-				+0.8
3,011,821	-				+0.2
3,011,821	-				-1.7
3,011,821	-				+0.6
3,011,821	-				-0.2
3,011,821	-				-0.7
3,011,845	-				+0.4
3,011,845	-				+0.4
3,011,894	+				-0.9
3,011,894	+				+0.7
3,011,894	+				+0.6
3,011,894	+				+0.4
3,011,894	+				+0.6
3,011,894	+				+1.1
3,011,894	+				+2.2
3,011,894	+				+0.4
3,011,894	+				-0.3
3,011,894	+				+0.3
3,011,894	+				+2.0
3,011,895	-				-1.7
3,011,895	-				-1.2
3,011,895	-				-0.6
3,011,895	-				+1.4
3,011,895	-				-1.4
3,011,895	-				-0.4
3,011,895	-				+1.4
3,011,895	-				-0.6
3,011,899	-				-2.4
3,011,903	+				+0.4
3,011,903	+				+1.1
3,011,903	+				+1.1
3,011,903	+				+1.0
3,011,903	+				-0.9
3,011,903	+				-2.9
3,011,903	+				+0.2
3,011,904	-				+1.4
3,011,904	-				+0.2
3,011,904	-				-1.7
3,011,951	+				+0.8
3,011,986	+				-1.2
3,011,986	+				-2.3
3,011,986	+				+0.7
3,011,986	+				+1.1
3,011,986	+				-0.2
3,011,986	+				+1.4
3,011,986	+				-1.6
3,011,987	-				+0.1
3,011,987	-				-0.9
3,011,987	-				-0.2
3,011,987	-				+2.3
3,011,988	+				-1.1
3,011,988	+				-0.1
3,011,988	+				-2.4
3,011,988	+				-1.0
3,011,989	-				-0.9
3,012,016	+				-0.3
3,012,023	-				-0.2
3,012,058	+				+1.4
3,012,233	+		Pf1N1B4_2674	0.47	+0.2
3,012,234	-		Pf1N1B4_2674	0.47	-1.4
3,012,372	-		Pf1N1B4_2674	0.85	-0.6
3,012,401	+				+0.4
3,012,404	+				+0.7
3,012,404	+				-1.7
3,012,404	+				-1.4
3,012,405	-				-0.6
3,012,405	-				-1.4
3,012,405	-				-0.9
3,012,536	+				-0.4
3,012,537	-				+1.2
3,012,537	-				-1.2
3,012,537	-				+0.7
3,012,806	-		Pf1N1B4_2675	0.21	-1.4
3,012,883	+		Pf1N1B4_2675	0.25	-0.6
3,012,884	-		Pf1N1B4_2675	0.25	+0.8