Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1746

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
1,997,339	-		Pf1N1B4_1745	0.77	-0.8
1,997,356	+		Pf1N1B4_1745	0.78	-0.5
1,997,356	+		Pf1N1B4_1745	0.78	-1.0
1,997,357	-		Pf1N1B4_1745	0.78	-1.2
1,997,542	+		Pf1N1B4_1745	0.85	+0.3
1,997,542	+		Pf1N1B4_1745	0.85	+3.1
1,997,542	+		Pf1N1B4_1745	0.85	-1.9
1,997,542	+		Pf1N1B4_1745	0.85	+1.3
1,997,542	+		Pf1N1B4_1745	0.85	+2.2
1,997,542	+		Pf1N1B4_1745	0.85	-0.4
1,997,542	+		Pf1N1B4_1745	0.85	+0.8
1,997,542	+		Pf1N1B4_1745	0.85	-1.5
1,997,542	+		Pf1N1B4_1745	0.85	+1.3
1,997,542	+		Pf1N1B4_1745	0.85	+0.8
1,997,542	+		Pf1N1B4_1745	0.85	-0.5
1,997,542	+		Pf1N1B4_1745	0.85	-0.0
1,997,542	+		Pf1N1B4_1745	0.85	+0.9
1,997,542	+		Pf1N1B4_1745	0.85	+0.6
1,997,542	+		Pf1N1B4_1745	0.85	+0.7
1,997,542	+		Pf1N1B4_1745	0.85	-0.0
1,997,542	+		Pf1N1B4_1745	0.85	+0.7
1,997,542	+		Pf1N1B4_1745	0.85	-1.8
1,997,543	-		Pf1N1B4_1745	0.85	-1.2
1,997,543	-		Pf1N1B4_1745	0.85	-1.3
1,997,543	-		Pf1N1B4_1745	0.85	-1.9
1,997,543	-		Pf1N1B4_1745	0.85	+1.0
1,997,543	-		Pf1N1B4_1745	0.85	-0.5
1,997,543	-		Pf1N1B4_1745	0.85	-1.0
1,997,544	+		Pf1N1B4_1745	0.85	-0.5
1,997,544	+		Pf1N1B4_1745	0.85	-0.9
1,997,545	-		Pf1N1B4_1745	0.85	-0.0
1,997,645	-		Pf1N1B4_1745	0.89	-0.6
1,997,645	-		Pf1N1B4_1745	0.89	+1.1
1,997,745	+				+0.1
1,997,745	+				-1.0
1,997,745	+				+0.5
1,997,746	-				+1.7
1,997,746	-				+0.5
1,997,764	+				+0.8
1,997,764	+				+0.5
1,997,764	+				+1.1
1,997,764	+				+0.2
1,997,764	+				+1.1
1,997,764	+				-0.5
1,997,765	-				+0.7
1,997,800	+				+0.0
1,997,871	+				-1.0
1,997,885	+				-0.5
1,997,885	+				-0.5
1,997,900	+				+0.2
1,997,900	+				-0.0
1,997,900	+				+0.3
1,997,900	+				-0.5
1,997,923	+				-1.9
1,997,923	+				-1.3
1,997,923	+				+1.2
1,997,923	+				-1.6
1,997,923	+				+0.2
1,997,923	+				-0.5
1,997,923	+				+1.4
1,997,923	+				-1.3
1,997,923	+				+1.2
1,997,924	-				+1.1
1,997,924	-				-0.0
1,997,924	-				+0.4
1,997,924	-				-0.8
1,997,924	-				+1.2
1,997,924	-				+1.2
1,997,924	-				+1.8
1,997,924	-				-0.5
1,997,924	-				-1.0
1,997,924	-				+0.2
1,997,924	-				-0.0
1,998,000	-				-0.0
1,998,033	+				+0.1
1,998,034	-				-1.0
1,998,034	-				+0.9
1,998,047	+				-0.0
1,998,047	+				+0.5
1,998,047	+				-0.6
1,998,047	+				+0.5
1,998,047	+				-0.0
1,998,048	-				+0.5
1,998,048	-				-0.8
1,998,048	-				+1.3
1,998,048	-				+1.5
1,998,048	-				+1.4
1,998,048	-				+1.8
1,998,048	-				-0.0
1,998,048	-				+1.9
1,998,048	-				+0.0
1,998,141	+				+1.5
1,998,141	+				-0.6
1,998,142	-				+0.5
1,998,142	-				-1.6
1,998,290	-				+1.3
1,998,323	-				+1.1
1,998,435	-				+3.0
1,998,435	-				+2.4
1,999,007	+		Pf1N1B4_1746	0.46	+0.1
1,999,145	+		Pf1N1B4_1746	0.55	+2.0
1,999,154	+		Pf1N1B4_1746	0.56	-0.4
1,999,154	+		Pf1N1B4_1746	0.56	+0.7
1,999,155	-		Pf1N1B4_1746	0.56	+0.6
1,999,254	+		Pf1N1B4_1746	0.63	+1.5
1,999,255	-		Pf1N1B4_1746	0.63	+1.5
1,999,255	-		Pf1N1B4_1746	0.63	+0.1
1,999,255	-		Pf1N1B4_1746	0.63	-0.0
1,999,255	-		Pf1N1B4_1746	0.63	+0.1
1,999,256	+		Pf1N1B4_1746	0.63	+1.7
1,999,360	+		Pf1N1B4_1746	0.70	+0.8
1,999,481	+		Pf1N1B4_1746	0.78	+0.1
1,999,481	+		Pf1N1B4_1746	0.78	-0.7
1,999,481	+		Pf1N1B4_1746	0.78	+0.2
1,999,481	+		Pf1N1B4_1746	0.78	-0.1
1,999,482	-		Pf1N1B4_1746	0.78	+1.2
1,999,639	+		Pf1N1B4_1746	0.89	+0.5
1,999,639	+		Pf1N1B4_1746	0.89	+2.8
1,999,639	+		Pf1N1B4_1746	0.89	-0.8
1,999,640	-		Pf1N1B4_1746	0.89	-1.5
1,999,640	-		Pf1N1B4_1746	0.89	+0.5
1,999,640	-		Pf1N1B4_1746	0.89	+1.9
1,999,640	-		Pf1N1B4_1746	0.89	-1.9
1,999,767	-				+2.4
1,999,813	+				-1.0
1,999,814	-				-0.5
1,999,816	+				-0.5
1,999,816	+				-0.8
1,999,817	-				+1.0
1,999,833	+				-0.5
1,999,833	+				-0.5
1,999,834	-				+2.4
1,999,834	-				+1.0
1,999,834	-				+1.3
1,999,844	+				+1.4
1,999,986	+				+0.2
2,000,129	+				+1.5
2,000,129	+				+1.9
2,000,130	-				-0.5
2,000,187	+		Pf1N1B4_1748	0.10	-0.5
2,000,187	+		Pf1N1B4_1748	0.10	+0.5
2,000,187	+		Pf1N1B4_1748	0.10	-1.3
2,000,187	+		Pf1N1B4_1748	0.10	+2.0
2,000,188	-		Pf1N1B4_1748	0.10	-1.6
2,000,188	-		Pf1N1B4_1748	0.10	-0.0
2,000,188	-		Pf1N1B4_1748	0.10	+1.5
2,000,188	-		Pf1N1B4_1748	0.10	-0.0
2,000,188	-		Pf1N1B4_1748	0.10	-2.7
2,000,188	-				+0.5
2,000,188	-		Pf1N1B4_1748	0.10	-0.0
2,000,188	-		Pf1N1B4_1748	0.10	-1.4
2,000,188	-		Pf1N1B4_1748	0.10	-2.5
2,000,189	+		Pf1N1B4_1748	0.11	+0.7
2,000,189	+		Pf1N1B4_1748	0.11	+1.2
2,000,189	+		Pf1N1B4_1748	0.11	-1.5
2,000,189	+		Pf1N1B4_1748	0.11	+1.9
2,000,190	-		Pf1N1B4_1748	0.11	+1.5
2,000,457	-		Pf1N1B4_1748	0.53	-1.3
2,000,472	-		Pf1N1B4_1748	0.55	-2.3
2,000,578	+		Pf1N1B4_1748	0.72	-1.0
2,000,579	-		Pf1N1B4_1748	0.72	-0.5
2,000,645	-		Pf1N1B4_1748	0.82	-0.0
2,000,690	+		Pf1N1B4_1748	0.89	-0.0
2,000,690	+		Pf1N1B4_1748	0.89	+2.5
2,000,690	+		Pf1N1B4_1748	0.89	-1.0
2,000,691	-		Pf1N1B4_1748	0.89	-1.1
2,000,691	-		Pf1N1B4_1748	0.89	-1.6
2,000,691	-		Pf1N1B4_1748	0.89	-1.9
2,000,691	-		Pf1N1B4_1748	0.89	+0.7
2,000,691	-		Pf1N1B4_1748	0.89	-1.0
2,000,691	-		Pf1N1B4_1748	0.89	-2.3
2,000,758	+				-1.6
2,000,758	+				-0.5
2,000,759	-				-0.0
2,000,761	+				-1.6
2,000,761	+				+1.1
2,000,761	+				-0.8
2,000,761	+				-1.6
2,000,762	-				-0.0
2,000,762	-				-1.5
2,000,762	-				+0.5
2,000,762	-				-0.0
2,000,762	-				-1.8
2,000,762	-				+0.3
2,000,762	-				-1.0
2,000,762	-				-0.2
2,000,762	-				-0.5
2,000,762	-				-0.0
2,000,762	-				-2.5
2,000,762	-				-0.5
2,000,762	-				+0.4
2,000,762	-				+0.2