Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1733

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
1,980,192	+		Pf1N1B4_1732	0.30	-1.8
1,980,193	-		Pf1N1B4_1732	0.30	-1.3
1,980,240	+		Pf1N1B4_1732	0.34	+0.7
1,980,283	-		Pf1N1B4_1732	0.37	-0.2
1,980,451	+		Pf1N1B4_1732	0.51	-0.1
1,980,451	+		Pf1N1B4_1732	0.51	-0.5
1,980,452	-		Pf1N1B4_1732	0.51	-0.5
1,980,452	-		Pf1N1B4_1732	0.51	-0.0
1,980,517	+		Pf1N1B4_1732	0.57	+0.2
1,980,517	+		Pf1N1B4_1732	0.57	-1.5
1,980,518	-		Pf1N1B4_1732	0.57	+0.9
1,980,518	-		Pf1N1B4_1732	0.57	+1.5
1,980,588	+		Pf1N1B4_1732	0.63	-0.4
1,980,589	-		Pf1N1B4_1732	0.63	+0.4
1,980,589	-		Pf1N1B4_1732	0.63	+1.7
1,980,589	-		Pf1N1B4_1732	0.63	+0.5
1,980,589	-		Pf1N1B4_1732	0.63	-0.7
1,980,711	+		Pf1N1B4_1732	0.73	-0.5
1,980,797	-		Pf1N1B4_1732	0.80	-0.8
1,980,797	-		Pf1N1B4_1732	0.80	+1.5
1,980,797	-		Pf1N1B4_1732	0.80	+2.1
1,980,802	+		Pf1N1B4_1732	0.80	+0.4
1,980,802	+		Pf1N1B4_1732	0.80	+0.2
1,980,876	+		Pf1N1B4_1732	0.86	-0.6
1,980,876	+		Pf1N1B4_1732	0.86	+1.9
1,980,877	-		Pf1N1B4_1732	0.86	-0.7
1,980,877	-		Pf1N1B4_1732	0.86	-0.5
1,981,025	+				+3.5
1,981,072	+				+1.7
1,981,073	-				-0.0
1,981,073	-				-0.0
1,981,093	+				-0.6
1,981,094	-				-0.6
1,981,128	+				-0.5
1,981,128	+				+0.7
1,981,128	+				-1.3
1,981,129	-				-1.5
1,981,270	-				-1.2
1,981,289	-				-0.0
1,981,289	-				+1.0
1,981,311	-				+1.9
1,981,441	+		Pf1N1B4_1733	0.20	-1.5
1,981,573	+		Pf1N1B4_1733	0.30	+1.0
1,981,573	+		Pf1N1B4_1733	0.30	-1.6
1,981,573	+		Pf1N1B4_1733	0.30	+0.2
1,981,574	-		Pf1N1B4_1733	0.30	+1.0
1,981,574	-		Pf1N1B4_1733	0.30	+1.1
1,981,574	-		Pf1N1B4_1733	0.30	-1.4
1,981,574	-		Pf1N1B4_1733	0.30	+0.5
1,981,574	-		Pf1N1B4_1733	0.30	-1.5
1,981,601	+		Pf1N1B4_1733	0.32	-1.4
1,981,612	+		Pf1N1B4_1733	0.33	-0.8
1,981,612	+		Pf1N1B4_1733	0.33	+2.2
1,981,613	-		Pf1N1B4_1733	0.33	-1.0
1,981,613	-		Pf1N1B4_1733	0.33	-1.5
1,981,613	-		Pf1N1B4_1733	0.33	+1.3
1,981,613	-		Pf1N1B4_1733	0.33	+0.2
1,981,613	-		Pf1N1B4_1733	0.33	-1.9
1,981,613	-		Pf1N1B4_1733	0.33	-0.3
1,981,743	+		Pf1N1B4_1733	0.43	-1.0
1,981,743	+		Pf1N1B4_1733	0.43	+1.5
1,981,744	-		Pf1N1B4_1733	0.43	+0.0
1,981,744	-		Pf1N1B4_1733	0.43	-1.3
1,981,744	-		Pf1N1B4_1733	0.43	-0.0
1,981,744	-		Pf1N1B4_1733	0.43	+1.5
1,981,761	+		Pf1N1B4_1733	0.45	-0.1
1,981,762	-		Pf1N1B4_1733	0.45	-2.9
1,981,762	-		Pf1N1B4_1733	0.45	-1.5
1,981,762	-		Pf1N1B4_1733	0.45	-0.0
1,981,762	-		Pf1N1B4_1733	0.45	-1.7
1,981,762	-		Pf1N1B4_1733	0.45	-2.0
1,981,762	-		Pf1N1B4_1733	0.45	-1.9
1,981,762	-		Pf1N1B4_1733	0.45	-0.2
1,981,823	-		Pf1N1B4_1733	0.49	-0.8
1,981,823	-		Pf1N1B4_1733	0.49	-1.5
1,982,015	+		Pf1N1B4_1733	0.64	+0.8
1,982,053	+		Pf1N1B4_1733	0.67	-0.4
1,982,053	+		Pf1N1B4_1733	0.67	+1.5
1,982,210	-		Pf1N1B4_1733	0.80	-1.9
1,982,210	-		Pf1N1B4_1733	0.80	-0.8
1,982,210	-		Pf1N1B4_1733	0.80	-1.8
1,982,210	-		Pf1N1B4_1733	0.80	-1.6
1,982,218	+		Pf1N1B4_1733	0.80	-0.5
1,982,219	-		Pf1N1B4_1733	0.80	+0.3
1,982,468	+				-0.8
1,982,468	+				-1.0
1,982,468	+				+0.1
1,982,468	+				+1.5
1,982,468	+				-0.6
1,982,468	+				+0.1
1,982,469	-				-0.3
1,982,469	-				+0.5
1,982,469	-				-0.2
1,982,469	-				+1.8
1,982,469	-				+1.4
1,982,469	-				-1.0
1,982,531	+				+0.4
1,982,532	-				+0.1
1,982,532	-				+1.5
1,982,532	-				+1.5
1,982,650	+				+1.5
1,982,650	+				+2.5
1,982,650	+				+0.9
1,982,650	+				-0.0
1,982,650	+				-0.8
1,982,650	+				-1.2
1,982,650	+				+0.5
1,982,651	-				+0.2
1,982,651	-				-1.0
1,982,651	-				-2.5
1,982,668	+				-0.0
1,982,669	-				-0.6
1,982,669	-				+1.0
1,982,669	-				-0.3
1,982,669	-				+1.9
1,982,683	+				+0.5
1,982,683	+				+1.4
1,982,698	+				-1.5
1,982,699	-				+0.1
1,982,699	-				+0.1
1,982,795	-		Pf1N1B4_1734	0.10	-0.5
1,982,842	+		Pf1N1B4_1734	0.13	-0.3
1,982,842	+		Pf1N1B4_1734	0.13	+0.5
1,982,842	+		Pf1N1B4_1734	0.13	+1.5
1,982,842	+		Pf1N1B4_1734	0.13	+2.7
1,982,842	+		Pf1N1B4_1734	0.13	-1.3
1,982,843	-		Pf1N1B4_1734	0.13	-0.0
1,982,843	-		Pf1N1B4_1734	0.13	-0.8
1,982,843	-		Pf1N1B4_1734	0.13	-1.0
1,982,843	-		Pf1N1B4_1734	0.13	-0.0
1,982,843	-		Pf1N1B4_1734	0.13	-0.3
1,982,843	-		Pf1N1B4_1734	0.13	-0.8
1,982,843	-		Pf1N1B4_1734	0.13	+3.5
1,982,843	-		Pf1N1B4_1734	0.13	-1.3
1,982,843	-		Pf1N1B4_1734	0.13	-1.3
1,982,843	-		Pf1N1B4_1734	0.13	-2.5
1,982,843	-		Pf1N1B4_1734	0.13	+1.1
1,982,843	-		Pf1N1B4_1734	0.13	-0.0
1,982,848	+		Pf1N1B4_1734	0.14	+1.2
1,982,848	+		Pf1N1B4_1734	0.14	+1.0
1,982,848	+		Pf1N1B4_1734	0.14	-0.9
1,982,848	+		Pf1N1B4_1734	0.14	-0.5
1,982,848	+		Pf1N1B4_1734	0.14	-1.0
1,982,848	+		Pf1N1B4_1734	0.14	+2.7
1,982,849	-		Pf1N1B4_1734	0.14	-1.5
1,982,849	-		Pf1N1B4_1734	0.14	-0.0
1,982,849	-		Pf1N1B4_1734	0.14	+1.1
1,983,187	+		Pf1N1B4_1734	0.37	-0.5
1,983,205	+		Pf1N1B4_1734	0.39	-0.0
1,983,206	-		Pf1N1B4_1734	0.39	+0.9
1,983,206	-		Pf1N1B4_1734	0.39	+2.7
1,983,206	-		Pf1N1B4_1734	0.39	-2.2