Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1593

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
1,833,467	+		Pf1N1B4_1591	0.87	+1.4
1,833,467	+		Pf1N1B4_1591	0.87	-0.8
1,833,601	+				-1.5
1,833,602	-				-0.5
1,833,745	+				-0.2
1,833,745	+				-1.0
1,833,745	+				-0.1
1,833,745	+				+1.3
1,833,745	+				-1.1
1,833,746	-				-0.1
1,833,746	-				-0.4
1,833,746	-				-0.8
1,833,746	-				+1.2
1,833,746	-				+1.4
1,833,746	-				-2.7
1,833,746	-				-1.1
1,833,746	-				+1.2
1,833,763	+				+0.4
1,833,763	+				+1.6
1,833,763	+				-0.1
1,833,764	-				-1.3
1,833,764	-				-2.9
1,833,764	-				-0.1
1,833,764	-				-0.6
1,833,789	-				-0.1
1,833,940	+		Pf1N1B4_1592	0.31	+1.0
1,833,940	+		Pf1N1B4_1592	0.31	+1.3
1,833,940	+		Pf1N1B4_1592	0.31	-1.6
1,833,940	+		Pf1N1B4_1592	0.31	+0.5
1,833,941	-		Pf1N1B4_1592	0.31	+0.2
1,833,941	-		Pf1N1B4_1592	0.31	-2.2
1,833,941	-		Pf1N1B4_1592	0.31	-0.6
1,833,941	-		Pf1N1B4_1592	0.31	+0.5
1,833,955	+		Pf1N1B4_1592	0.34	-0.8
1,833,955	+		Pf1N1B4_1592	0.34	-0.2
1,833,955	+		Pf1N1B4_1592	0.34	+0.4
1,833,956	-		Pf1N1B4_1592	0.34	-0.1
1,833,956	-		Pf1N1B4_1592	0.34	+0.1
1,833,956	-		Pf1N1B4_1592	0.34	-0.5
1,833,956	-		Pf1N1B4_1592	0.34	-1.9
1,833,967	+		Pf1N1B4_1592	0.36	+0.5
1,833,968	-		Pf1N1B4_1592	0.36	+1.4
1,833,968	-		Pf1N1B4_1592	0.36	+0.5
1,833,968	-		Pf1N1B4_1592	0.36	+0.5
1,834,057	+				+0.5
1,834,144	+		Pf1N1B4_1592	0.67	+1.7
1,834,145	-		Pf1N1B4_1592	0.67	+2.3
1,834,145	-		Pf1N1B4_1592	0.67	-1.8
1,834,180	+		Pf1N1B4_1592	0.73	+0.4
1,834,180	+		Pf1N1B4_1592	0.73	+1.2
1,834,180	+		Pf1N1B4_1592	0.73	-1.1
1,834,181	-		Pf1N1B4_1592	0.74	+1.5
1,834,266	+		Pf1N1B4_1592	0.88	-0.9
1,834,267	-		Pf1N1B4_1592	0.89	+0.7
1,834,267	-		Pf1N1B4_1592	0.89	+0.5
1,834,267	-		Pf1N1B4_1592	0.89	-0.8
1,834,312	-				-0.5
1,834,333	-				-1.6
1,834,355	+				-0.6
1,834,411	+		Pf1N1B4_1593	0.18	-1.6
1,834,411	+		Pf1N1B4_1593	0.18	+0.8
1,834,411	+		Pf1N1B4_1593	0.18	-1.8
1,834,412	-		Pf1N1B4_1593	0.18	+0.2
1,834,425	-		Pf1N1B4_1593	0.24	+1.5
1,834,604	+				+0.3
1,834,604	+				-0.8
1,834,624	+				-1.6
1,834,624	+				-1.5
1,834,624	+				-0.5
1,834,625	-				-0.5
1,834,625	-				-0.1
1,834,625	-				-0.1
1,834,625	-				+0.1
1,834,625	-				+1.8
1,834,669	+				-1.5
1,834,669	+				-0.9
1,834,669	+				+0.1
1,834,670	-				-0.8
1,834,670	-				+2.5
1,834,670	-				-1.3
1,834,670	-				+0.2
1,834,709	+				+0.5
1,834,741	+				+0.8
1,834,741	+				-2.4
1,834,770	+				-1.3
1,834,771	-				-0.5
1,834,798	+				-2.9
1,834,824	+				-0.3
1,834,824	+				+0.2
1,834,824	+				-0.8
1,834,824	+				-0.2
1,834,824	+				-0.3
1,834,824	+				+0.5
1,834,824	+				-1.5
1,834,824	+				-0.1
1,834,824	+				-0.3
1,834,825	-				-1.2
1,834,825	-				-0.9
1,834,825	-				-2.2
1,834,825	-				-1.1
1,834,825	-				-0.7
1,834,825	-				+0.9
1,834,825	-				-0.1
1,834,825	-				-0.3
1,834,835	+				-0.1
1,834,835	+				+0.5
1,834,836	-				-1.3
1,834,897	+				-0.3
1,834,897	+				-2.2
1,834,897	+				-0.9
1,834,898	-				+0.1
1,834,898	-				-0.3
1,834,898	-				+1.2
1,834,898	-				-0.4
1,834,898	-				+1.0
1,834,898	-				+0.5
1,835,178	+		Pf1N1B4_1594	0.14	+1.0
1,835,178	+		Pf1N1B4_1594	0.14	+0.2
1,835,178	+		Pf1N1B4_1594	0.14	-0.3
1,835,180	+		Pf1N1B4_1594	0.14	-0.1
1,835,202	+		Pf1N1B4_1594	0.15	-1.9
1,835,202	+		Pf1N1B4_1594	0.15	-1.1
1,835,203	-		Pf1N1B4_1594	0.16	-0.1
1,835,203	-		Pf1N1B4_1594	0.16	-0.5
1,835,262	+		Pf1N1B4_1594	0.19	-1.3
1,835,262	+		Pf1N1B4_1594	0.19	-1.3
1,835,263	-		Pf1N1B4_1594	0.19	+2.3
1,835,286	+		Pf1N1B4_1594	0.20	+0.5
1,835,331	+		Pf1N1B4_1594	0.22	+0.9
1,835,331	+		Pf1N1B4_1594	0.22	+1.7
1,835,331	+		Pf1N1B4_1594	0.22	+3.1
1,835,331	+		Pf1N1B4_1594	0.22	+1.9
1,835,331	+		Pf1N1B4_1594	0.22	+1.0
1,835,331	+		Pf1N1B4_1594	0.22	-2.1
1,835,332	-		Pf1N1B4_1594	0.22	-0.8
1,835,332	-		Pf1N1B4_1594	0.22	-0.4
1,835,332	-		Pf1N1B4_1594	0.22	+0.7
1,835,332	-		Pf1N1B4_1594	0.22	+1.3
1,835,363	+		Pf1N1B4_1594	0.24	-0.2
1,835,486	+		Pf1N1B4_1594	0.31	-1.6
1,835,486	+		Pf1N1B4_1594	0.31	-0.1
1,835,559	+		Pf1N1B4_1594	0.34	-1.2