Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1501

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
1,734,576	+		Pf1N1B4_1500	0.50	-2.1
1,734,576	+		Pf1N1B4_1500	0.50	-1.5
1,734,588	+		Pf1N1B4_1500	0.52	+0.8
1,734,717	+		Pf1N1B4_1500	0.69	-0.1
1,734,717	+		Pf1N1B4_1500	0.69	-0.8
1,734,717	+		Pf1N1B4_1500	0.69	-0.1
1,734,718	-		Pf1N1B4_1500	0.69	+0.8
1,734,718	-		Pf1N1B4_1500	0.69	-0.7
1,734,822	+		Pf1N1B4_1500	0.82	-1.1
1,734,975	-				-1.5
1,734,994	+				+0.5
1,734,994	+				+1.2
1,734,994	+				-0.8
1,734,995	-				+1.0
1,734,995	-				+1.5
1,734,995	-				+0.5
1,734,995	-				-1.3
1,734,995	-				-1.6
1,734,995	-				-1.8
1,734,995	-				-0.5
1,734,995	-				-1.1
1,734,998	-				+1.5
1,734,998	-				+0.0
1,734,998	-				-0.8
1,735,014	+				-0.5
1,735,015	-				+3.1
1,735,015	-				+1.8
1,735,015	-				+0.5
1,735,019	-				-0.1
1,735,019	-				-1.1
1,735,019	-				-1.1
1,735,019	-				-1.5
1,735,039	-				-1.3
1,735,053	-				+1.5
1,735,053	-				-0.2
1,735,189	-				+0.6
1,735,255	-				-1.5
1,735,255	-				-0.1
1,735,255	-				+1.5
1,735,255	-				-0.8
1,735,541	+		Pf1N1B4_1501	0.18	-0.3
1,735,541	+		Pf1N1B4_1501	0.18	-0.8
1,735,554	+		Pf1N1B4_1501	0.20	-1.7
1,735,554	+		Pf1N1B4_1501	0.20	-1.6
1,735,554	+		Pf1N1B4_1501	0.20	+1.5
1,735,555	-		Pf1N1B4_1501	0.20	-2.1
1,735,555	-		Pf1N1B4_1501	0.20	+0.5
1,735,748	+		Pf1N1B4_1501	0.52	-1.1
1,735,748	+		Pf1N1B4_1501	0.52	+0.2
1,735,749	-		Pf1N1B4_1501	0.52	-1.9
1,735,749	-		Pf1N1B4_1501	0.52	-0.8
1,735,749	-		Pf1N1B4_1501	0.52	-1.1
1,735,787	+		Pf1N1B4_1501	0.58	-0.5
1,735,797	-		Pf1N1B4_1501	0.60	-3.3
1,735,826	-		Pf1N1B4_1501	0.65	-1.1
1,735,826	-		Pf1N1B4_1501	0.65	-1.3
1,735,969	-		Pf1N1B4_1501	0.88	-2.2
1,736,018	+				+0.6
1,736,019	-				-2.2
1,736,019	-				-0.8
1,736,068	-				-1.8
1,736,122	+		Pf1N1B4_1502	0.13	+1.3
1,736,262	+		Pf1N1B4_1502	0.30	-1.1
1,736,262	+		Pf1N1B4_1502	0.30	+0.7
1,736,262	+		Pf1N1B4_1502	0.30	-0.6
1,736,263	-		Pf1N1B4_1502	0.30	-0.8
1,736,263	-		Pf1N1B4_1502	0.30	-2.8
1,736,263	-		Pf1N1B4_1502	0.30	-1.5
1,736,263	-		Pf1N1B4_1502	0.30	-0.8
1,736,263	-		Pf1N1B4_1502	0.30	-1.1
1,736,263	-		Pf1N1B4_1502	0.30	+1.7
1,736,437	-		Pf1N1B4_1502	0.52	-0.8
1,736,437	-		Pf1N1B4_1502	0.52	+0.0
1,736,437	-		Pf1N1B4_1502	0.52	+0.4
1,736,437	-		Pf1N1B4_1502	0.52	-1.9
1,736,437	-		Pf1N1B4_1502	0.52	-2.1
1,736,462	+		Pf1N1B4_1502	0.55	+0.7
1,736,710	+		Pf1N1B4_1502	0.85	+3.4
1,736,710	+		Pf1N1B4_1502	0.85	-1.1
1,736,710	+		Pf1N1B4_1502	0.85	-1.8
1,736,711	-		Pf1N1B4_1502	0.85	-2.1
1,736,711	-		Pf1N1B4_1502	0.85	-0.5
1,736,711	-		Pf1N1B4_1502	0.85	-1.5
1,736,711	-		Pf1N1B4_1502	0.85	-3.3
1,736,711	-		Pf1N1B4_1502	0.85	-0.4
1,736,711	-		Pf1N1B4_1502	0.85	-0.1
1,736,711	-		Pf1N1B4_1502	0.85	+0.4
1,736,711	-		Pf1N1B4_1502	0.85	-0.7
1,736,772	+				+0.3
1,736,772	+				-1.5
1,736,773	-				+0.1
1,736,773	-				+0.9
1,736,773	-				-0.9
1,736,773	-				+1.2
1,736,784	+				+1.0
1,736,784	+				-0.7
1,736,784	+				+1.3
1,736,784	+				+1.0
1,736,785	-				-0.1
1,736,785	-				-0.8
1,736,785	-				-0.8
1,736,785	-				+0.2
1,736,785	-				-0.9
1,736,785	-				-0.1
1,736,785	-				-2.3
1,736,785	-				-0.7
1,736,789	+				-0.1
1,736,789	+				+2.5
1,736,790	-				+0.2
1,736,790	-				-1.7
1,736,790	-				-1.3
1,736,790	-				-1.8
1,736,793	-				+0.5
1,736,972	-		Pf1N1B4_1503	0.62	-1.8
1,737,010	-		Pf1N1B4_1503	0.77	+0.5