Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1220

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
1,383,200	+		Pf1N1B4_1219	0.39	+1.4
1,383,203	+		Pf1N1B4_1219	0.39	+2.1
1,383,216	-		Pf1N1B4_1219	0.40	-0.2
1,383,229	-		Pf1N1B4_1219	0.41	-0.4
1,383,440	-		Pf1N1B4_1219	0.60	+1.4
1,383,456	-		Pf1N1B4_1219	0.61	+0.1
1,383,456	-		Pf1N1B4_1219	0.61	+0.3
1,383,497	+		Pf1N1B4_1219	0.65	+0.8
1,383,569	+		Pf1N1B4_1219	0.71	-1.8
1,383,569	+		Pf1N1B4_1219	0.71	+0.4
1,383,570	-		Pf1N1B4_1219	0.71	-0.2
1,383,570	-		Pf1N1B4_1219	0.71	-1.9
1,383,570	-		Pf1N1B4_1219	0.71	-0.2
1,383,570	-		Pf1N1B4_1219	0.71	-1.8
1,383,570	-		Pf1N1B4_1219	0.71	-1.2
1,383,570	-		Pf1N1B4_1219	0.71	-1.2
1,383,570	-		Pf1N1B4_1219	0.71	-1.2
1,383,570	-		Pf1N1B4_1219	0.71	+0.6
1,383,570	-		Pf1N1B4_1219	0.71	+0.4
1,383,570	-		Pf1N1B4_1219	0.71	-0.9
1,383,570	-		Pf1N1B4_1219	0.71	+1.4
1,383,570	-		Pf1N1B4_1219	0.71	+1.9
1,383,599	+		Pf1N1B4_1219	0.73	+0.5
1,383,600	-		Pf1N1B4_1219	0.73	-0.2
1,383,772	+		Pf1N1B4_1219	0.88	-1.6
1,383,772	+		Pf1N1B4_1219	0.88	-0.6
1,383,772	+		Pf1N1B4_1219	0.88	+0.3
1,383,773	-		Pf1N1B4_1219	0.88	-0.2
1,383,773	-		Pf1N1B4_1219	0.88	-1.8
1,383,773	-		Pf1N1B4_1219	0.88	-0.8
1,383,773	-		Pf1N1B4_1219	0.88	-0.5
1,383,773	-		Pf1N1B4_1219	0.88	+1.7
1,383,773	-		Pf1N1B4_1219	0.88	-0.4
1,383,773	-		Pf1N1B4_1219	0.88	+0.4
1,383,773	-		Pf1N1B4_1219	0.88	+0.3
1,383,773	-		Pf1N1B4_1219	0.88	-1.4
1,383,773	-		Pf1N1B4_1219	0.88	-1.8
1,383,773	-		Pf1N1B4_1219	0.88	-0.2
1,383,806	+				+0.7
1,383,806	+				-1.4
1,383,895	-				+1.2
1,383,916	+				+0.4
1,383,916	+				+0.8
1,383,917	-				-2.6
1,383,923	+				+0.3
1,383,923	+				-1.6
1,383,924	-				+0.4
1,383,924	-				-0.8
1,383,927	+				+1.4
1,383,967	-				+0.4
1,384,023	-				-1.2
1,384,097	-				-1.2
1,384,128	+				-0.9
1,384,129	-				+0.1
1,384,129	-				-1.4
1,384,129	-				-1.1
1,384,285	+		Pf1N1B4_1220	0.18	+0.4
1,384,426	-		Pf1N1B4_1220	0.34	-0.7
1,384,426	-		Pf1N1B4_1220	0.34	-1.5
1,384,426	-		Pf1N1B4_1220	0.34	-1.4
1,384,665	+		Pf1N1B4_1220	0.61	-1.6
1,384,666	-		Pf1N1B4_1220	0.62	-1.8
1,384,666	-		Pf1N1B4_1220	0.62	-0.4
1,384,666	-		Pf1N1B4_1220	0.62	+2.4
1,384,732	+		Pf1N1B4_1220	0.69	-1.6
1,384,732	+		Pf1N1B4_1220	0.69	-1.4
1,384,733	-		Pf1N1B4_1220	0.69	-2.1
1,384,733	-		Pf1N1B4_1220	0.69	-1.3
1,384,733	-		Pf1N1B4_1220	0.69	+1.4
1,384,733	-		Pf1N1B4_1220	0.69	-1.4
1,384,733	-		Pf1N1B4_1220	0.69	+1.1
1,384,733	-		Pf1N1B4_1220	0.69	-1.6
1,384,733	-		Pf1N1B4_1220	0.69	-1.8
1,384,733	-		Pf1N1B4_1220	0.69	-0.2
1,384,733	-		Pf1N1B4_1220	0.69	-2.7
1,384,733	-		Pf1N1B4_1220	0.69	-0.1
1,384,733	-		Pf1N1B4_1220	0.69	-0.0
1,384,733	-				-0.9
1,384,987	+				-0.6
1,384,988	-				-0.2
1,384,988	-				-0.6
1,385,069	-				-1.8
1,385,102	+				+0.4
1,385,103	-				-0.0
1,385,103	-				-1.2
1,385,106	+				-0.4
1,385,136	+				-0.6
1,385,136	+				+1.4
1,385,136	+				-0.6
1,385,137	-				-0.6
1,385,137	-				-1.4
1,385,137	-				-1.8
1,385,137	-				-0.6
1,385,174	+				-1.2
1,385,175	-				-1.4
1,385,175	-				+0.4
1,385,175	-				-0.4
1,385,175	-				+0.4
1,385,175	-				-1.8
1,385,175	-				-1.5
1,385,354	+		Pf1N1B4_1221	0.17	-0.4
1,385,354	+		Pf1N1B4_1221	0.17	-2.8
1,385,355	-		Pf1N1B4_1221	0.17	-0.9
1,385,355	-		Pf1N1B4_1221	0.17	+0.4
1,385,355	-		Pf1N1B4_1221	0.17	+0.8
1,385,355	-		Pf1N1B4_1221	0.17	-0.6
1,385,355	-		Pf1N1B4_1221	0.17	-0.3
1,385,441	+		Pf1N1B4_1221	0.25	-1.4
1,385,501	-		Pf1N1B4_1221	0.30	-0.6
1,385,533	+		Pf1N1B4_1221	0.33	+2.4
1,385,732	+		Pf1N1B4_1221	0.50	+0.4
1,385,732	+		Pf1N1B4_1221	0.50	-1.2
1,385,732	+		Pf1N1B4_1221	0.50	-0.8
1,385,733	-		Pf1N1B4_1221	0.50	-0.9
1,385,762	-		Pf1N1B4_1221	0.53	-0.6
1,385,872	+		Pf1N1B4_1221	0.62	-0.2
1,385,872	+		Pf1N1B4_1221	0.62	+0.7
1,385,873	-		Pf1N1B4_1221	0.62	-2.6
1,385,921	+		Pf1N1B4_1221	0.66	+1.4
1,385,921	+		Pf1N1B4_1221	0.66	-0.2
1,385,921	+		Pf1N1B4_1221	0.66	-0.2
1,385,921	+		Pf1N1B4_1221	0.66	+1.0
1,385,922	-				+0.8