Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23635 and HSERO_RS23640 are separated by 58 nucleotides HSERO_RS23640 and HSERO_RS23645 overlap by 19 nucleotides HSERO_RS23645 and HSERO_RS23650 are separated by 12 nucleotides HSERO_RS23650 and HSERO_RS23655 overlap by 8 nucleotides
HSERO_RS23635: HSERO_RS23635 - urease accessory protein UreG, at 5,418,739 to 5,419,371
_RS23635
HSERO_RS23640: HSERO_RS23640 - Ni/Fe hydrogenase, at 5,419,430 to 5,420,041
_RS23640
HSERO_RS23645: HSERO_RS23645 - glycerol-3-phosphate dehydrogenase, at 5,420,023 to 5,421,627
_RS23645
HSERO_RS23650: HSERO_RS23650 - phosphonate ABC transporter permease, at 5,421,640 to 5,422,473
_RS23650
HSERO_RS23655: HSERO_RS23655 - phosphonate ABC transporter permease, at 5,422,466 to 5,423,269
_RS23655
Position (kb) 5420
5421
5422 Strain fitness (log2 ratio) -1
0
1 at 5419.035 kb on + strand, within HSERO_RS23635 at 5419.085 kb on + strand, within HSERO_RS23635 at 5419.293 kb on + strand, within HSERO_RS23635 at 5419.626 kb on - strand, within HSERO_RS23640 at 5419.636 kb on - strand, within HSERO_RS23640 at 5419.699 kb on - strand, within HSERO_RS23640 at 5419.845 kb on - strand, within HSERO_RS23640 at 5419.865 kb on - strand, within HSERO_RS23640 at 5419.998 kb on - strand at 5420.027 kb on - strand at 5420.321 kb on + strand, within HSERO_RS23645 at 5420.823 kb on - strand, within HSERO_RS23645 at 5420.882 kb on + strand, within HSERO_RS23645 at 5421.021 kb on - strand, within HSERO_RS23645 at 5421.033 kb on - strand, within HSERO_RS23645 at 5421.091 kb on - strand, within HSERO_RS23645 at 5421.320 kb on - strand, within HSERO_RS23645 at 5421.320 kb on - strand, within HSERO_RS23645 at 5421.398 kb on + strand, within HSERO_RS23645 at 5421.480 kb on - strand at 5421.586 kb on - strand at 5421.777 kb on - strand, within HSERO_RS23650 at 5422.060 kb on - strand, within HSERO_RS23650 at 5422.285 kb on + strand, within HSERO_RS23650 at 5422.354 kb on - strand, within HSERO_RS23650 at 5422.393 kb on + strand at 5422.535 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 5,419,035 + HSERO_RS23635 0.47 +0.0 5,419,085 + HSERO_RS23635 0.55 +0.7 5,419,293 + HSERO_RS23635 0.88 +0.2 5,419,626 - HSERO_RS23640 0.32 +0.0 5,419,636 - HSERO_RS23640 0.34 -1.0 5,419,699 - HSERO_RS23640 0.44 +0.7 5,419,845 - HSERO_RS23640 0.68 +0.0 5,419,865 - HSERO_RS23640 0.71 -0.1 5,419,998 - -0.2 5,420,027 - -0.2 5,420,321 + HSERO_RS23645 0.19 +0.7 5,420,823 - HSERO_RS23645 0.50 +1.1 5,420,882 + HSERO_RS23645 0.54 +0.2 5,421,021 - HSERO_RS23645 0.62 -0.6 5,421,033 - HSERO_RS23645 0.63 -0.6 5,421,091 - HSERO_RS23645 0.67 -0.1 5,421,320 - HSERO_RS23645 0.81 +1.0 5,421,320 - HSERO_RS23645 0.81 -1.0 5,421,398 + HSERO_RS23645 0.86 -0.3 5,421,480 - +0.1 5,421,586 - -0.5 5,421,777 - HSERO_RS23650 0.16 -0.5 5,422,060 - HSERO_RS23650 0.50 -0.2 5,422,285 + HSERO_RS23650 0.77 -0.2 5,422,354 - HSERO_RS23650 0.86 -0.1 5,422,393 + -0.2 5,422,535 + -1.4
Or see this region's nucleotide sequence