Experiment: PYE with Nalidixic 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03868 and CCNA_03869 are separated by 38 nucleotides CCNA_03869 and CCNA_03870 overlap by 11 nucleotides CCNA_03870 and CCNA_03871 overlap by 11 nucleotides
CCNA_03868: CCNA_03868 - chromosome partitioning protein ParB, at 4,030,549 to 4,031,463
_03868
CCNA_03869: CCNA_03869 - chromosome partitioning protein ParA, at 4,031,502 to 4,032,305
_03869
CCNA_03870: CCNA_03870 - methyltransferase GidB, at 4,032,295 to 4,032,945
_03870
CCNA_03871: CCNA_03871 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA, at 4,032,935 to 4,034,791
_03871
Position (kb)
4032
4033 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 4031.472 kb on + strand at 4031.511 kb on - strand at 4032.342 kb on - strand at 4032.342 kb on - strand at 4032.377 kb on + strand, within CCNA_03870 at 4032.488 kb on - strand, within CCNA_03870 at 4032.494 kb on + strand, within CCNA_03870 at 4032.494 kb on + strand, within CCNA_03870 at 4032.521 kb on + strand, within CCNA_03870 at 4032.579 kb on - strand, within CCNA_03870 at 4032.591 kb on + strand, within CCNA_03870 at 4032.638 kb on - strand, within CCNA_03870 at 4032.647 kb on + strand, within CCNA_03870 at 4032.690 kb on - strand, within CCNA_03870 at 4032.709 kb on + strand, within CCNA_03870 at 4032.739 kb on + strand, within CCNA_03870 at 4032.747 kb on - strand, within CCNA_03870 at 4032.754 kb on + strand, within CCNA_03870 at 4032.754 kb on + strand, within CCNA_03870 at 4032.754 kb on + strand, within CCNA_03870 at 4032.754 kb on + strand, within CCNA_03870 at 4032.754 kb on + strand, within CCNA_03870 at 4032.754 kb on + strand, within CCNA_03870 at 4032.754 kb on + strand, within CCNA_03870 at 4032.754 kb on + strand, within CCNA_03870 at 4032.754 kb on + strand, within CCNA_03870 at 4032.754 kb on + strand, within CCNA_03870 at 4032.754 kb on + strand, within CCNA_03870 at 4032.754 kb on + strand, within CCNA_03870 at 4032.762 kb on - strand, within CCNA_03870 at 4032.762 kb on - strand, within CCNA_03870 at 4032.762 kb on - strand, within CCNA_03870 at 4032.762 kb on - strand, within CCNA_03870 at 4032.762 kb on - strand, within CCNA_03870 at 4032.762 kb on - strand, within CCNA_03870 at 4032.762 kb on - strand, within CCNA_03870 at 4032.762 kb on - strand, within CCNA_03870 at 4032.762 kb on - strand, within CCNA_03870 at 4032.762 kb on - strand, within CCNA_03870 at 4032.762 kb on - strand, within CCNA_03870 at 4032.762 kb on - strand, within CCNA_03870 at 4032.762 kb on - strand, within CCNA_03870 at 4032.762 kb on - strand, within CCNA_03870 at 4032.805 kb on + strand, within CCNA_03870 at 4032.805 kb on + strand, within CCNA_03870 at 4032.805 kb on + strand, within CCNA_03870 at 4032.805 kb on + strand, within CCNA_03870 at 4032.813 kb on - strand, within CCNA_03870 at 4032.813 kb on - strand, within CCNA_03870 at 4032.813 kb on - strand, within CCNA_03870 at 4032.836 kb on + strand, within CCNA_03870 at 4032.845 kb on + strand at 4032.970 kb on - strand at 4033.190 kb on - strand, within CCNA_03871 at 4033.332 kb on + strand, within CCNA_03871 at 4033.358 kb on - strand, within CCNA_03871 at 4033.586 kb on - strand, within CCNA_03871 at 4033.691 kb on - strand, within CCNA_03871 at 4033.706 kb on - strand, within CCNA_03871 at 4033.706 kb on - strand, within CCNA_03871 at 4033.802 kb on - strand, within CCNA_03871
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Nalidixic 0.06 mg/ml remove 4,031,472 + -2.0 4,031,511 - -1.1 4,032,342 - -0.5 4,032,342 - +1.4 4,032,377 + CCNA_03870 0.13 -1.9 4,032,488 - CCNA_03870 0.30 -0.5 4,032,494 + CCNA_03870 0.31 +0.1 4,032,494 + CCNA_03870 0.31 +0.4 4,032,521 + CCNA_03870 0.35 -0.3 4,032,579 - CCNA_03870 0.44 -0.3 4,032,591 + CCNA_03870 0.45 -0.4 4,032,638 - CCNA_03870 0.53 +0.3 4,032,647 + CCNA_03870 0.54 -2.2 4,032,690 - CCNA_03870 0.61 +2.1 4,032,709 + CCNA_03870 0.64 -0.3 4,032,739 + CCNA_03870 0.68 -0.4 4,032,747 - CCNA_03870 0.69 +1.8 4,032,754 + CCNA_03870 0.71 +0.9 4,032,754 + CCNA_03870 0.71 -0.0 4,032,754 + CCNA_03870 0.71 +0.1 4,032,754 + CCNA_03870 0.71 +0.4 4,032,754 + CCNA_03870 0.71 -2.7 4,032,754 + CCNA_03870 0.71 +4.9 4,032,754 + CCNA_03870 0.71 -1.8 4,032,754 + CCNA_03870 0.71 +2.8 4,032,754 + CCNA_03870 0.71 +1.9 4,032,754 + CCNA_03870 0.71 -2.6 4,032,754 + CCNA_03870 0.71 -0.8 4,032,754 + CCNA_03870 0.71 -1.9 4,032,762 - CCNA_03870 0.72 +1.1 4,032,762 - CCNA_03870 0.72 +1.8 4,032,762 - CCNA_03870 0.72 +1.9 4,032,762 - CCNA_03870 0.72 +2.2 4,032,762 - CCNA_03870 0.72 -2.0 4,032,762 - CCNA_03870 0.72 -1.1 4,032,762 - CCNA_03870 0.72 +1.5 4,032,762 - CCNA_03870 0.72 +0.5 4,032,762 - CCNA_03870 0.72 -2.6 4,032,762 - CCNA_03870 0.72 +1.0 4,032,762 - CCNA_03870 0.72 -0.5 4,032,762 - CCNA_03870 0.72 -1.4 4,032,762 - CCNA_03870 0.72 +1.3 4,032,762 - CCNA_03870 0.72 +1.5 4,032,805 + CCNA_03870 0.78 -0.8 4,032,805 + CCNA_03870 0.78 -2.1 4,032,805 + CCNA_03870 0.78 -0.0 4,032,805 + CCNA_03870 0.78 +0.8 4,032,813 - CCNA_03870 0.80 +0.5 4,032,813 - CCNA_03870 0.80 +0.5 4,032,813 - CCNA_03870 0.80 -2.8 4,032,836 + CCNA_03870 0.83 -0.8 4,032,845 + +3.2 4,032,970 - -0.5 4,033,190 - CCNA_03871 0.14 -1.7 4,033,332 + CCNA_03871 0.21 -1.0 4,033,358 - CCNA_03871 0.23 -1.1 4,033,586 - CCNA_03871 0.35 -1.3 4,033,691 - CCNA_03871 0.41 -3.2 4,033,706 - CCNA_03871 0.42 -0.2 4,033,706 - CCNA_03871 0.42 -0.9 4,033,802 - CCNA_03871 0.47 +0.2
Or see this region's nucleotide sequence