Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03848

Experiment: PYE with Nalidixic 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Nalidixic 0.06 mg/ml
4,012,986	+		CCNA_03846	0.87	-0.5
4,012,986	+		CCNA_03846	0.87	+2.4
4,012,986	+		CCNA_03846	0.87	-0.4
4,012,994	-		CCNA_03846	0.88	-0.7
4,013,007	+				+0.5
4,013,027	-				+0.2
4,013,038	+				-1.4
4,013,038	+				-1.3
4,013,074	+				-1.8
4,013,082	-				+2.7
4,013,087	+				-2.2
4,013,097	+				-0.2
4,013,097	-				-0.1
4,013,101	+				+1.1
4,013,108	+				+0.7
4,013,146	+				-0.3
4,013,178	-				+0.7
4,013,215	+		CCNA_03847	0.14	-1.2
4,013,215	+		CCNA_03847	0.14	+0.1
4,013,220	+		CCNA_03847	0.15	+0.0
4,013,223	-		CCNA_03847	0.15	-0.5
4,013,234	+		CCNA_03847	0.17	-1.9
4,013,242	-		CCNA_03847	0.18	+0.1
4,013,270	+		CCNA_03847	0.22	+1.3
4,013,278	-		CCNA_03847	0.23	+1.5
4,013,284	+		CCNA_03847	0.24	-1.5
4,013,284	+		CCNA_03847	0.24	-1.3
4,013,292	-		CCNA_03847	0.25	+1.5
4,013,294	+		CCNA_03847	0.25	+3.6
4,013,294	+		CCNA_03847	0.25	-2.1
4,013,302	-		CCNA_03847	0.26	-2.1
4,013,316	+		CCNA_03847	0.28	+0.2
4,013,324	-		CCNA_03847	0.29	-1.3
4,013,339	+		CCNA_03847	0.31	-1.6
4,013,360	+		CCNA_03847	0.34	+0.9
4,013,360	+		CCNA_03847	0.34	+0.5
4,013,368	-		CCNA_03847	0.35	-1.3
4,013,370	+		CCNA_03847	0.36	+1.1
4,013,377	+		CCNA_03847	0.37	-0.5
4,013,409	+		CCNA_03847	0.41	-1.7
4,013,409	-		CCNA_03847	0.41	-1.5
4,013,415	+		CCNA_03847	0.42	-0.9
4,013,449	-		CCNA_03847	0.46	+0.2
4,013,503	-		CCNA_03847	0.54	-2.2
4,013,515	-		CCNA_03847	0.56	-1.1
4,013,526	+		CCNA_03847	0.57	-1.8
4,013,528	+		CCNA_03847	0.57	-0.2
4,013,528	+		CCNA_03847	0.57	-1.2
4,013,534	-		CCNA_03847	0.58	+0.9
4,013,536	-		CCNA_03847	0.58	-1.2
4,013,536	-		CCNA_03847	0.58	-1.1
4,013,550	+		CCNA_03847	0.60	-1.1
4,013,572	+		CCNA_03847	0.63	-3.1
4,013,579	-		CCNA_03847	0.64	-1.6
4,013,607	+		CCNA_03847	0.68	-0.7
4,013,621	+		CCNA_03847	0.70	+0.8
4,013,646	-		CCNA_03847	0.74	+1.1
4,013,646	-		CCNA_03847	0.74	-0.5
4,013,656	+		CCNA_03847	0.75	-1.4
4,013,662	+		CCNA_03847	0.76	-1.1
4,013,679	-		CCNA_03847	0.78	+1.9
4,013,690	-		CCNA_03847	0.80	+0.9
4,013,734	-		CCNA_03847	0.86	-2.2
4,013,734	-		CCNA_03847	0.86	-0.6
4,013,734	-		CCNA_03847	0.86	-1.6
4,013,746	+		CCNA_03847	0.87	-1.4
4,013,753	+		CCNA_03847	0.88	+2.3
4,013,754	-		CCNA_03847	0.88	+0.2
4,013,822	+				-0.7
4,013,822	+				-0.4
4,013,877	+				+0.0
4,013,888	+				+0.1
4,014,003	+				+1.9
4,014,007	+				-0.5
4,014,013	-				+0.3
4,014,014	+				-1.3
4,014,014	+				-0.3
4,014,015	-				+1.9
4,014,069	-		CCNA_03848	0.12	-3.2
4,014,069	-		CCNA_03848	0.12	-0.3
4,014,086	+		CCNA_03848	0.14	-0.9
4,014,089	-		CCNA_03848	0.15	-2.9
4,014,101	+		CCNA_03848	0.16	+2.3
4,014,107	+		CCNA_03848	0.17	+1.3
4,014,107	+		CCNA_03848	0.17	-0.4
4,014,107	+		CCNA_03848	0.17	-0.1
4,014,107	+		CCNA_03848	0.17	+1.5
4,014,107	+		CCNA_03848	0.17	+0.2
4,014,107	+		CCNA_03848	0.17	+0.5
4,014,107	+		CCNA_03848	0.17	+0.9
4,014,107	+		CCNA_03848	0.17	-1.3
4,014,107	+		CCNA_03848	0.17	-1.7
4,014,107	+		CCNA_03848	0.17	+0.1
4,014,107	+		CCNA_03848	0.17	-0.6
4,014,107	+		CCNA_03848	0.17	+0.1
4,014,107	+		CCNA_03848	0.17	-2.0
4,014,107	+		CCNA_03848	0.17	+1.0
4,014,107	+		CCNA_03848	0.17	+0.7
4,014,107	+		CCNA_03848	0.17	-1.4
4,014,107	+		CCNA_03848	0.17	-1.3
4,014,115	-		CCNA_03848	0.18	+0.1
4,014,115	-		CCNA_03848	0.18	+2.8
4,014,115	-		CCNA_03848	0.18	-3.2
4,014,115	-		CCNA_03848	0.18	+0.5
4,014,115	-		CCNA_03848	0.18	-1.8
4,014,115	-		CCNA_03848	0.18	-3.5
4,014,115	-		CCNA_03848	0.18	-1.4
4,014,115	-		CCNA_03848	0.18	-0.7
4,014,115	-		CCNA_03848	0.18	+3.0
4,014,115	-		CCNA_03848	0.18	-2.0
4,014,115	-		CCNA_03848	0.18	-1.3
4,014,115	-		CCNA_03848	0.18	-1.7
4,014,115	-		CCNA_03848	0.18	+1.0
4,014,115	-		CCNA_03848	0.18	+0.4
4,014,115	-		CCNA_03848	0.18	-1.9
4,014,115	-		CCNA_03848	0.18	+0.9
4,014,115	-		CCNA_03848	0.18	-0.6
4,014,115	-		CCNA_03848	0.18	-1.2
4,014,115	-		CCNA_03848	0.18	+0.8
4,014,115	-		CCNA_03848	0.18	+0.9
4,014,115	-		CCNA_03848	0.18	+1.7
4,014,115	-		CCNA_03848	0.18	-0.3
4,014,115	-		CCNA_03848	0.18	-1.1
4,014,115	-		CCNA_03848	0.18	-0.0
4,014,133	+		CCNA_03848	0.20	+1.2
4,014,155	+		CCNA_03848	0.22	+0.3
4,014,162	-		CCNA_03848	0.23	-1.8
4,014,231	+		CCNA_03848	0.31	+0.5
4,014,312	+		CCNA_03848	0.41	+0.8
4,014,312	+		CCNA_03848	0.41	-0.2
4,014,315	-		CCNA_03848	0.41	+1.7
4,014,317	+		CCNA_03848	0.41	+0.3
4,014,323	+		CCNA_03848	0.42	+0.7
4,014,323	+		CCNA_03848	0.42	+1.5
4,014,398	-		CCNA_03848	0.51	+4.0
4,014,410	-		CCNA_03848	0.52	-2.2
4,014,416	+		CCNA_03848	0.53	-0.8
4,014,441	-		CCNA_03848	0.56	-0.1
4,014,485	-		CCNA_03848	0.61	-0.1
4,014,523	+		CCNA_03848	0.65	-0.1
4,014,523	+		CCNA_03848	0.65	-0.3
4,014,531	-		CCNA_03848	0.66	+0.2
4,014,545	+		CCNA_03848	0.68	+0.8
4,014,592	-		CCNA_03848	0.73	-0.2
4,014,594	+		CCNA_03848	0.74	-1.0
4,014,602	-		CCNA_03848	0.74	-0.7
4,014,636	+		CCNA_03848	0.78	+1.8
4,014,641	+		CCNA_03848	0.79	+1.9
4,014,643	-		CCNA_03848	0.79	+0.9
4,014,644	-		CCNA_03848	0.79	-2.4
4,014,644	-		CCNA_03848	0.79	+0.8
4,014,670	+		CCNA_03848	0.82	+0.1
4,014,673	-		CCNA_03848	0.83	-0.5
4,014,684	+		CCNA_03848	0.84	+1.5
4,014,684	+		CCNA_03848	0.84	+3.5
4,014,698	-		CCNA_03848	0.86	-1.3
4,014,703	-		CCNA_03848	0.86	-2.2
4,014,705	-		CCNA_03848	0.86	+2.3
4,014,715	+		CCNA_03848	0.88	+0.3
4,014,744	+				-0.8
4,014,759	+				+0.4
4,014,759	+				-2.2
4,014,792	+				-0.3
4,014,811	-				-1.8
4,014,836	+				-0.6
4,014,836	+				+2.0
4,014,836	+				-0.5
4,014,836	+				+0.3
4,014,841	+				-1.4
4,014,844	-				+1.2
4,014,844	-				-2.1
4,014,844	-				-0.7
4,014,844	-				-2.3
4,014,844	-				+0.2
4,014,844	-				-0.0
4,014,844	-				+1.7
4,014,844	-				+1.2
4,014,854	-				+1.9
4,014,859	+				-2.7
4,014,863	-				-2.0
4,014,867	+				+0.9
4,014,880	-				+0.7
4,014,930	-				+3.9
4,014,935	+				+0.7
4,015,033	+				+6.7
4,015,044	+				+4.4
4,015,047	-				+3.9
4,015,060	-				+5.9
4,015,065	-		CCNA_03849	0.10	+3.8
4,015,065	-		CCNA_03849	0.10	+4.8
4,015,100	+		CCNA_03849	0.14	+6.1
4,015,103	-		CCNA_03849	0.14	+4.5
4,015,141	-		CCNA_03849	0.18	+5.7
4,015,193	+		CCNA_03849	0.23	+6.6
4,015,312	-		CCNA_03849	0.35	+3.9
4,015,364	-		CCNA_03849	0.40	+3.3
4,015,368	+		CCNA_03849	0.41	+5.6
4,015,373	+		CCNA_03849	0.41	+5.6
4,015,373	+		CCNA_03849	0.41	+6.6
4,015,394	+		CCNA_03849	0.43	+5.4
4,015,428	-		CCNA_03849	0.47	+3.2
4,015,518	+		CCNA_03849	0.56	+5.6
4,015,526	-		CCNA_03849	0.57	+5.6
4,015,565	+		CCNA_03849	0.61	+5.5
4,015,565	+		CCNA_03849	0.61	+6.2
4,015,565	+		CCNA_03849	0.61	+5.9
4,015,575	-		CCNA_03849	0.62	+5.8
4,015,606	-		CCNA_03849	0.65	+0.8
4,015,606	-		CCNA_03849	0.65	+2.3
4,015,613	+		CCNA_03849	0.65	+5.8
4,015,619	-		CCNA_03849	0.66	+2.5
4,015,638	-		CCNA_03849	0.68	+3.5
4,015,638	-		CCNA_03849	0.68	+3.3
4,015,669	+				+6.4
4,015,686	-		CCNA_03849	0.73	+4.0