Experiment: PYE with Nalidixic 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03583 and CCNA_03584 are separated by 139 nucleotides CCNA_03584 and CCNA_03585 are separated by 79 nucleotides CCNA_03585 and CCNA_03586 overlap by 4 nucleotides CCNA_03586 and CCNA_03587 are separated by 59 nucleotides
CCNA_03583: CCNA_03583 - hypothetical protein, at 3,739,668 to 3,739,859
_03583
CCNA_03584: CCNA_03584 - histidine phosphotransferase ChpT, at 3,739,999 to 3,740,676
_03584
CCNA_03585: CCNA_03585 - chemotaxis receiver domain protein CheYIV, at 3,740,756 to 3,741,133
_03585
CCNA_03586: CCNA_03586 - chemotaxis protein methyltransferase, at 3,741,130 to 3,741,960
_03586
CCNA_03587: CCNA_03587 - entericidin B-like protein, at 3,742,020 to 3,742,163
_03587
Position (kb)
3740
3741
3742 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 3739.791 kb on + strand, within CCNA_03583 at 3739.798 kb on - strand, within CCNA_03583 at 3739.811 kb on + strand, within CCNA_03583 at 3739.811 kb on + strand, within CCNA_03583 at 3739.811 kb on + strand, within CCNA_03583 at 3739.811 kb on + strand, within CCNA_03583 at 3739.819 kb on - strand, within CCNA_03583 at 3739.824 kb on - strand, within CCNA_03583 at 3739.869 kb on + strand at 3739.950 kb on + strand at 3739.950 kb on + strand at 3739.953 kb on - strand at 3739.958 kb on - strand at 3739.963 kb on - strand at 3739.980 kb on - strand at 3740.699 kb on + strand at 3740.704 kb on + strand at 3740.707 kb on - strand at 3740.753 kb on + strand at 3740.761 kb on - strand at 3740.768 kb on + strand at 3740.768 kb on + strand at 3740.776 kb on - strand at 3740.783 kb on - strand at 3740.836 kb on + strand, within CCNA_03585 at 3740.876 kb on + strand, within CCNA_03585 at 3740.877 kb on + strand, within CCNA_03585 at 3740.909 kb on - strand, within CCNA_03585 at 3740.920 kb on - strand, within CCNA_03585 at 3740.920 kb on - strand, within CCNA_03585 at 3740.920 kb on - strand, within CCNA_03585 at 3740.973 kb on - strand, within CCNA_03585 at 3740.999 kb on + strand, within CCNA_03585 at 3741.004 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.042 kb on - strand, within CCNA_03585 at 3741.052 kb on - strand, within CCNA_03585 at 3741.142 kb on + strand at 3741.160 kb on + strand at 3741.160 kb on + strand at 3741.160 kb on + strand at 3741.160 kb on + strand at 3741.168 kb on - strand at 3741.213 kb on - strand, within CCNA_03586 at 3741.233 kb on + strand, within CCNA_03586 at 3741.249 kb on + strand, within CCNA_03586 at 3741.250 kb on + strand, within CCNA_03586 at 3741.273 kb on + strand, within CCNA_03586 at 3741.281 kb on - strand, within CCNA_03586 at 3741.281 kb on - strand, within CCNA_03586 at 3741.282 kb on + strand, within CCNA_03586 at 3741.309 kb on + strand, within CCNA_03586 at 3741.309 kb on + strand, within CCNA_03586 at 3741.333 kb on + strand, within CCNA_03586 at 3741.370 kb on + strand, within CCNA_03586 at 3741.397 kb on - strand, within CCNA_03586 at 3741.403 kb on + strand, within CCNA_03586 at 3741.508 kb on + strand, within CCNA_03586 at 3741.510 kb on - strand, within CCNA_03586 at 3741.513 kb on + strand, within CCNA_03586 at 3741.521 kb on - strand, within CCNA_03586 at 3741.624 kb on - strand, within CCNA_03586 at 3741.641 kb on - strand, within CCNA_03586 at 3741.654 kb on + strand, within CCNA_03586 at 3741.655 kb on + strand, within CCNA_03586 at 3741.662 kb on + strand, within CCNA_03586 at 3741.707 kb on + strand, within CCNA_03586 at 3741.743 kb on + strand, within CCNA_03586 at 3741.757 kb on + strand, within CCNA_03586 at 3741.812 kb on - strand, within CCNA_03586 at 3741.815 kb on + strand, within CCNA_03586 at 3741.850 kb on + strand, within CCNA_03586 at 3741.850 kb on - strand, within CCNA_03586 at 3741.865 kb on - strand, within CCNA_03586 at 3741.896 kb on + strand at 3741.934 kb on + strand at 3741.934 kb on + strand at 3741.942 kb on - strand at 3741.987 kb on + strand at 3742.011 kb on + strand at 3742.049 kb on - strand, within CCNA_03587 at 3742.049 kb on - strand, within CCNA_03587 at 3742.077 kb on + strand, within CCNA_03587 at 3742.077 kb on + strand, within CCNA_03587 at 3742.099 kb on + strand, within CCNA_03587
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Nalidixic 0.06 mg/ml remove 3,739,791 + CCNA_03583 0.64 +2.4 3,739,798 - CCNA_03583 0.68 -0.4 3,739,811 + CCNA_03583 0.74 -2.5 3,739,811 + CCNA_03583 0.74 -1.5 3,739,811 + CCNA_03583 0.74 +1.1 3,739,811 + CCNA_03583 0.74 -0.8 3,739,819 - CCNA_03583 0.79 -0.7 3,739,824 - CCNA_03583 0.81 +1.1 3,739,869 + +0.8 3,739,950 + -0.6 3,739,950 + -1.2 3,739,953 - +1.9 3,739,958 - +0.1 3,739,963 - +2.0 3,739,980 - -0.4 3,740,699 + -3.1 3,740,704 + -2.4 3,740,707 - -1.3 3,740,753 + -2.7 3,740,761 - +3.0 3,740,768 + -1.3 3,740,768 + +1.3 3,740,776 - -1.8 3,740,783 - -1.1 3,740,836 + CCNA_03585 0.21 +2.3 3,740,876 + CCNA_03585 0.32 -1.8 3,740,877 + CCNA_03585 0.32 +1.4 3,740,909 - CCNA_03585 0.40 -0.9 3,740,920 - CCNA_03585 0.43 +1.8 3,740,920 - CCNA_03585 0.43 -1.6 3,740,920 - CCNA_03585 0.43 +0.8 3,740,973 - CCNA_03585 0.57 +0.3 3,740,999 + CCNA_03585 0.64 -2.9 3,741,004 + CCNA_03585 0.66 -2.1 3,741,014 + CCNA_03585 0.68 +2.3 3,741,014 + CCNA_03585 0.68 -2.0 3,741,014 + CCNA_03585 0.68 -0.4 3,741,014 + CCNA_03585 0.68 +1.4 3,741,014 + CCNA_03585 0.68 +2.3 3,741,014 + CCNA_03585 0.68 +1.0 3,741,014 + CCNA_03585 0.68 +2.5 3,741,014 + CCNA_03585 0.68 +2.2 3,741,014 + CCNA_03585 0.68 +6.4 3,741,022 - CCNA_03585 0.70 -0.1 3,741,022 - CCNA_03585 0.70 +1.7 3,741,022 - CCNA_03585 0.70 -0.0 3,741,022 - CCNA_03585 0.70 -1.0 3,741,022 - CCNA_03585 0.70 -0.5 3,741,022 - CCNA_03585 0.70 -2.0 3,741,042 - CCNA_03585 0.76 +1.1 3,741,052 - CCNA_03585 0.78 -1.4 3,741,142 + +2.4 3,741,160 + -2.9 3,741,160 + -0.5 3,741,160 + +0.9 3,741,160 + -1.8 3,741,168 - -0.9 3,741,213 - CCNA_03586 0.10 -0.6 3,741,233 + CCNA_03586 0.12 +1.9 3,741,249 + CCNA_03586 0.14 +0.5 3,741,250 + CCNA_03586 0.14 -1.9 3,741,273 + CCNA_03586 0.17 +0.3 3,741,281 - CCNA_03586 0.18 +0.5 3,741,281 - CCNA_03586 0.18 -0.5 3,741,282 + CCNA_03586 0.18 +2.6 3,741,309 + CCNA_03586 0.22 -2.1 3,741,309 + CCNA_03586 0.22 +1.8 3,741,333 + CCNA_03586 0.24 +0.2 3,741,370 + CCNA_03586 0.29 -2.2 3,741,397 - CCNA_03586 0.32 +2.4 3,741,403 + CCNA_03586 0.33 +0.1 3,741,508 + CCNA_03586 0.45 +0.7 3,741,510 - CCNA_03586 0.46 -2.5 3,741,513 + CCNA_03586 0.46 -1.0 3,741,521 - CCNA_03586 0.47 -1.1 3,741,624 - CCNA_03586 0.59 -1.7 3,741,641 - CCNA_03586 0.61 -1.5 3,741,654 + CCNA_03586 0.63 -1.4 3,741,655 + CCNA_03586 0.63 -2.0 3,741,662 + CCNA_03586 0.64 +1.7 3,741,707 + CCNA_03586 0.69 -0.3 3,741,743 + CCNA_03586 0.74 +1.0 3,741,757 + CCNA_03586 0.75 +3.1 3,741,812 - CCNA_03586 0.82 -0.8 3,741,815 + CCNA_03586 0.82 +3.1 3,741,850 + CCNA_03586 0.87 +1.4 3,741,850 - CCNA_03586 0.87 +0.0 3,741,865 - CCNA_03586 0.88 -0.8 3,741,896 + +1.1 3,741,934 + +1.5 3,741,934 + -0.5 3,741,942 - -0.7 3,741,987 + -2.4 3,742,011 + -2.3 3,742,049 - CCNA_03587 0.20 +0.6 3,742,049 - CCNA_03587 0.20 +0.8 3,742,077 + CCNA_03587 0.40 -0.1 3,742,077 + CCNA_03587 0.40 -0.0 3,742,099 + CCNA_03587 0.55 +0.5
Or see this region's nucleotide sequence