Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03410

Experiment: PYE with Nalidixic 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Nalidixic 0.06 mg/ml
3,576,778	-				+0.5
3,576,795	+				-1.2
3,576,851	+		CCNA_03409	0.12	+0.9
3,576,851	+		CCNA_03409	0.12	+0.6
3,576,851	+		CCNA_03409	0.12	+1.4
3,576,851	+		CCNA_03409	0.12	-1.6
3,576,851	+		CCNA_03409	0.12	-1.0
3,576,851	+		CCNA_03409	0.12	-1.7
3,576,851	+		CCNA_03409	0.12	-0.1
3,576,854	-		CCNA_03409	0.12	+0.1
3,576,859	-		CCNA_03409	0.12	+1.1
3,576,859	-		CCNA_03409	0.12	-0.1
3,576,859	-		CCNA_03409	0.12	+1.3
3,576,859	-		CCNA_03409	0.12	+0.1
3,576,859	-		CCNA_03409	0.12	+0.5
3,576,859	-		CCNA_03409	0.12	-2.2
3,576,876	-		CCNA_03409	0.14	+0.5
3,576,888	+				+1.9
3,576,898	+		CCNA_03409	0.17	+1.4
3,576,906	-		CCNA_03409	0.17	-0.1
3,576,924	-		CCNA_03409	0.19	+0.6
3,576,929	-		CCNA_03409	0.20	-0.8
3,576,951	-		CCNA_03409	0.22	+0.0
3,576,976	+		CCNA_03409	0.25	-0.7
3,576,984	-		CCNA_03409	0.25	+1.8
3,576,986	-		CCNA_03409	0.26	+2.5
3,576,997	+		CCNA_03409	0.27	+1.3
3,577,022	+		CCNA_03409	0.29	+0.0
3,577,044	+		CCNA_03409	0.32	+1.5
3,577,121	-		CCNA_03409	0.40	-2.1
3,577,126	-		CCNA_03409	0.40	-0.0
3,577,144	-		CCNA_03409	0.42	-0.7
3,577,170	+		CCNA_03409	0.45	-0.7
3,577,170	+		CCNA_03409	0.45	-2.3
3,577,170	+		CCNA_03409	0.45	-0.4
3,577,177	-		CCNA_03409	0.46	-1.6
3,577,178	-		CCNA_03409	0.46	+0.1
3,577,178	-		CCNA_03409	0.46	-1.1
3,577,181	+		CCNA_03409	0.46	-1.5
3,577,189	-		CCNA_03409	0.47	-2.6
3,577,206	+		CCNA_03409	0.49	+0.7
3,577,221	+		CCNA_03409	0.50	-1.2
3,577,226	+		CCNA_03409	0.51	+0.3
3,577,227	+		CCNA_03409	0.51	-0.1
3,577,239	-		CCNA_03409	0.52	+1.5
3,577,272	-		CCNA_03409	0.56	-2.1
3,577,279	+		CCNA_03409	0.56	-1.7
3,577,287	-		CCNA_03409	0.57	+0.1
3,577,313	+		CCNA_03409	0.60	+0.3
3,577,375	-		CCNA_03409	0.66	-0.2
3,577,378	+		CCNA_03409	0.67	+0.5
3,577,385	+		CCNA_03409	0.67	-1.8
3,577,386	-		CCNA_03409	0.68	-0.8
3,577,392	-		CCNA_03409	0.68	-0.2
3,577,392	-		CCNA_03409	0.68	-3.6
3,577,393	-		CCNA_03409	0.68	-2.3
3,577,414	-		CCNA_03409	0.70	-2.9
3,577,414	-				+2.5
3,577,429	-		CCNA_03409	0.72	-2.3
3,577,436	+		CCNA_03409	0.73	-2.0
3,577,442	+		CCNA_03409	0.73	+2.4
3,577,442	+		CCNA_03409	0.73	-1.3
3,577,504	+		CCNA_03409	0.80	-1.6
3,577,550	-		CCNA_03409	0.85	-0.5
3,577,619	+				-1.1
3,577,638	+				+0.7
3,577,659	-				-3.8
3,577,659	-				+0.5
3,577,665	-				-2.4
3,577,666	-				-0.1
3,577,779	-				+2.8
3,577,781	-				-0.6
3,577,781	-				-1.0
3,577,802	+				-0.3
3,577,810	-				+0.1
3,577,838	-				-3.0
3,577,839	-		CCNA_03410	0.10	+0.5
3,577,868	-		CCNA_03410	0.14	+0.9
3,577,904	+		CCNA_03410	0.18	-1.9
3,577,912	-		CCNA_03410	0.19	-0.8
3,577,912	-		CCNA_03410	0.19	-0.7
3,577,912	-		CCNA_03410	0.19	-1.9
3,577,961	-		CCNA_03410	0.25	-2.3
3,577,966	-		CCNA_03410	0.26	+0.7
3,577,975	+		CCNA_03410	0.27	-1.5
3,578,000	+		CCNA_03410	0.30	-1.3
3,578,023	-		CCNA_03410	0.33	-1.6
3,578,050	+		CCNA_03410	0.36	+2.2
3,578,052	+		CCNA_03410	0.36	+0.3
3,578,060	-		CCNA_03410	0.37	+0.7
3,578,060	-		CCNA_03410	0.37	-0.9
3,578,060	-		CCNA_03410	0.37	+0.4
3,578,089	-		CCNA_03410	0.41	+2.3
3,578,130	-		CCNA_03410	0.46	-0.4
3,578,138	+		CCNA_03410	0.47	-0.3
3,578,138	+		CCNA_03410	0.47	+0.5
3,578,138	+		CCNA_03410	0.47	-0.2
3,578,138	+		CCNA_03410	0.47	-0.3
3,578,138	+		CCNA_03410	0.47	-0.6
3,578,146	-		CCNA_03410	0.48	+0.3
3,578,146	-		CCNA_03410	0.48	-0.8
3,578,146	-		CCNA_03410	0.48	-0.8
3,578,177	-		CCNA_03410	0.52	+0.6
3,578,187	-		CCNA_03410	0.53	-2.5
3,578,203	-		CCNA_03410	0.55	-2.0
3,578,246	+		CCNA_03410	0.60	-0.6
3,578,246	+		CCNA_03410	0.60	-0.7
3,578,254	-		CCNA_03410	0.61	+0.5
3,578,254	-		CCNA_03410	0.61	+0.1
3,578,254	-		CCNA_03410	0.61	-0.1
3,578,256	+		CCNA_03410	0.61	-0.6
3,578,259	-		CCNA_03410	0.62	-1.3
3,578,328	-		CCNA_03410	0.70	+2.3
3,578,328	-		CCNA_03410	0.70	-0.0
3,578,362	-		CCNA_03410	0.74	+0.9
3,578,368	-		CCNA_03410	0.75	-0.8
3,578,380	-		CCNA_03410	0.77	-0.9
3,578,387	-		CCNA_03410	0.77	-2.3
3,578,391	+		CCNA_03410	0.78	+0.7
3,578,432	-		CCNA_03410	0.83	-0.3
3,578,518	+				-0.2
3,578,526	-				+1.5
3,578,564	+				+0.7
3,578,572	-				-1.5
3,578,572	-				-1.5
3,578,581	-				+1.5
3,578,608	+				+0.3
3,578,629	+				+0.4
3,578,637	-				+1.2
3,578,649	-				-0.2
3,578,649	-				-0.8
3,578,656	-				-2.5
3,578,894	-				+1.9
3,578,952	+		CCNA_03906	0.10	-2.1
3,578,952	+		CCNA_03906	0.10	-0.2
3,578,953	+		CCNA_03906	0.10	-0.2
3,578,960	-		CCNA_03906	0.12	+0.1
3,578,960	-		CCNA_03906	0.12	-1.1
3,578,960	-		CCNA_03906	0.12	-2.8
3,578,960	-		CCNA_03906	0.12	+3.0
3,578,960	-		CCNA_03906	0.12	+0.1
3,578,960	-		CCNA_03906	0.12	+0.5
3,578,984	-		CCNA_03906	0.19	+0.7
3,579,036	-		CCNA_03906	0.34	+1.9
3,579,042	+		CCNA_03906	0.36	-0.6
3,579,045	-		CCNA_03906	0.36	-1.9
3,579,075	-		CCNA_03906	0.45	+1.7
3,579,077	+		CCNA_03906	0.45	-0.1
3,579,077	+		CCNA_03906	0.45	-2.4
3,579,077	+		CCNA_03906	0.45	-0.3
3,579,077	+		CCNA_03906	0.45	+3.3
3,579,085	-		CCNA_03906	0.48	-1.6
3,579,102	+		CCNA_03906	0.53	-0.1
3,579,118	+		CCNA_03906	0.57	-0.5
3,579,131	+		CCNA_03906	0.61	-1.7
3,579,138	+		CCNA_03906	0.63	+0.0
3,579,139	+		CCNA_03906	0.63	+1.5
3,579,166	+		CCNA_03906	0.71	-0.3
3,579,174	-		CCNA_03906	0.73	+1.3
3,579,195	+		CCNA_03906	0.79	-1.6
3,579,200	+		CCNA_03906	0.80	+1.4
3,579,200	+		CCNA_03906	0.80	-1.4
3,579,200	+		CCNA_03906	0.80	-1.1
3,579,200	+		CCNA_03906	0.80	+2.0
3,579,208	-		CCNA_03906	0.82	+0.1
3,579,208	-				+2.5
3,579,208	-		CCNA_03906	0.82	-2.4
3,579,208	-		CCNA_03906	0.82	-1.2
3,579,208	-		CCNA_03906	0.82	+0.8
3,579,208	-		CCNA_03906	0.82	-1.9
3,579,208	-		CCNA_03906	0.82	+1.1
3,579,208	-		CCNA_03906	0.82	-1.1
3,579,208	-		CCNA_03906	0.82	-1.6
3,579,208	-		CCNA_03906	0.82	-0.4
3,579,215	-		CCNA_03906	0.84	-0.1
3,579,219	+		CCNA_03906	0.86	-2.3
3,579,219	+		CCNA_03906	0.86	-0.8
3,579,219	+		CCNA_03906	0.86	+0.1
3,579,219	+		CCNA_03906	0.86	-0.9
3,579,224	+		CCNA_03906	0.87	+3.3
3,579,227	-		CCNA_03906	0.88	+0.3
3,579,227	-		CCNA_03906	0.88	-0.3
3,579,232	-		CCNA_03906	0.89	-0.4
3,579,257	-				-1.2
3,579,257	-				-0.4
3,579,290	+				+0.1
3,579,290	+				+0.4
3,579,290	-				+1.1
3,579,298	-				+0.5
3,579,298	-				-0.5
3,579,302	+				+1.2
3,579,314	+				-1.9
3,579,314	+				-0.4
3,579,314	+				-0.5
3,579,314	+				+0.2
3,579,322	-				+0.7
3,579,322	-				+1.4
3,579,322	-				+3.2
3,579,349	+				-0.3
3,579,366	-				+0.4
3,579,373	+				+0.7
3,579,430	+				-1.9
3,579,438	-				-2.5
3,579,463	-				-1.7
3,579,463	-				-1.2
3,579,504	+				+0.9
3,579,504	+				-0.0
3,579,504	+				+1.3
3,579,504	+				+1.2
3,579,512	-				-0.2
3,579,512	-				+2.8
3,579,514	+				+1.7
3,579,526	+				-0.3
3,579,528	+				+2.1
3,579,528	+				+3.5
3,579,538	+				-1.7
3,579,538	+				-0.7
3,579,538	+				+1.6
3,579,546	-				-0.1
3,579,546	-				+0.3
3,579,546	-				+3.2
3,579,555	-		CCNA_03412	0.11	+0.7