Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03286

Experiment: PYE with Nalidixic 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Nalidixic 0.06 mg/ml
3,454,895	-				-1.5
3,454,925	+				-1.0
3,454,933	-				+1.1
3,454,940	+				+1.0
3,454,940	+				-2.5
3,454,948	-				+0.3
3,454,991	+				+0.9
3,454,996	+				+1.6
3,455,009	-				+0.5
3,455,059	-		CCNA_03285	0.12	+1.1
3,455,060	+		CCNA_03285	0.12	-0.8
3,455,079	-		CCNA_03285	0.14	+0.8
3,455,096	+		CCNA_03285	0.16	+0.0
3,455,096	+		CCNA_03285	0.16	-0.8
3,455,101	+		CCNA_03285	0.16	-2.5
3,455,103	-		CCNA_03285	0.17	-0.6
3,455,104	-		CCNA_03285	0.17	-1.0
3,455,140	+		CCNA_03285	0.20	+2.5
3,455,162	-		CCNA_03285	0.23	-2.3
3,455,173	-		CCNA_03285	0.24	+0.6
3,455,178	-		CCNA_03285	0.24	+0.4
3,455,187	+		CCNA_03285	0.25	-0.1
3,455,187	+		CCNA_03285	0.25	+0.9
3,455,187	+		CCNA_03285	0.25	+3.0
3,455,187	+		CCNA_03285	0.25	-0.7
3,455,195	-		CCNA_03285	0.26	+0.2
3,455,200	+		CCNA_03285	0.27	-0.6
3,455,202	+		CCNA_03285	0.27	-0.5
3,455,202	+		CCNA_03285	0.27	-1.2
3,455,210	-		CCNA_03285	0.28	+2.1
3,455,210	-		CCNA_03285	0.28	+2.6
3,455,210	-		CCNA_03285	0.28	-0.1
3,455,210	-		CCNA_03285	0.28	-0.5
3,455,210	-		CCNA_03285	0.28	+0.9
3,455,210	-		CCNA_03285	0.28	-0.7
3,455,210	-		CCNA_03285	0.28	-2.0
3,455,210	-		CCNA_03285	0.28	-0.3
3,455,259	+		CCNA_03285	0.33	+1.4
3,455,280	-		CCNA_03285	0.35	+1.0
3,455,284	+		CCNA_03285	0.35	-0.5
3,455,289	+		CCNA_03285	0.36	-2.6
3,455,289	+		CCNA_03285	0.36	+1.6
3,455,292	-		CCNA_03285	0.36	-1.7
3,455,297	-		CCNA_03285	0.37	+0.8
3,455,297	-		CCNA_03285	0.37	-1.8
3,455,313	+		CCNA_03285	0.38	-3.6
3,455,321	-		CCNA_03285	0.39	-1.2
3,455,336	-		CCNA_03285	0.41	+1.1
3,455,351	+		CCNA_03285	0.42	+0.1
3,455,351	+		CCNA_03285	0.42	-1.1
3,455,351	+		CCNA_03285	0.42	+1.1
3,455,353	-		CCNA_03285	0.42	-0.3
3,455,359	-		CCNA_03285	0.43	+0.4
3,455,368	+		CCNA_03285	0.44	-0.8
3,455,368	+		CCNA_03285	0.44	+1.2
3,455,368	+		CCNA_03285	0.44	+0.8
3,455,368	+		CCNA_03285	0.44	+0.1
3,455,368	+		CCNA_03285	0.44	-0.1
3,455,368	+		CCNA_03285	0.44	-2.4
3,455,381	-		CCNA_03285	0.45	-2.1
3,455,390	+		CCNA_03285	0.46	-0.4
3,455,396	-		CCNA_03285	0.47	-0.8
3,455,398	-		CCNA_03285	0.47	-1.4
3,455,412	+		CCNA_03285	0.49	-1.1
3,455,420	-		CCNA_03285	0.49	+0.1
3,455,420	-		CCNA_03285	0.49	+0.3
3,455,432	+		CCNA_03285	0.51	+0.5
3,455,432	-		CCNA_03285	0.51	-1.7
3,455,432	-		CCNA_03285	0.51	+0.4
3,455,432	-		CCNA_03285	0.51	-1.0
3,455,440	-		CCNA_03285	0.51	+0.3
3,455,484	+		CCNA_03285	0.56	-0.8
3,455,486	+		CCNA_03285	0.56	-1.8
3,455,491	+		CCNA_03285	0.57	-2.1
3,455,494	-		CCNA_03285	0.57	-0.8
3,455,494	-		CCNA_03285	0.57	-2.6
3,455,514	+		CCNA_03285	0.59	-0.8
3,455,580	+		CCNA_03285	0.66	+1.1
3,455,593	+		CCNA_03285	0.67	+0.1
3,455,614	+		CCNA_03285	0.69	-0.6
3,455,614	+		CCNA_03285	0.69	+0.4
3,455,614	+		CCNA_03285	0.69	-1.9
3,455,614	+		CCNA_03285	0.69	-0.1
3,455,614	+		CCNA_03285	0.69	-1.1
3,455,614	+		CCNA_03285	0.69	-2.4
3,455,622	-		CCNA_03285	0.70	-0.1
3,455,622	-				+0.8
3,455,622	-		CCNA_03285	0.70	+2.0
3,455,622	-		CCNA_03285	0.70	-1.3
3,455,629	-		CCNA_03285	0.71	+2.9
3,455,634	-		CCNA_03285	0.71	-1.0
3,455,634	-		CCNA_03285	0.71	+1.4
3,455,665	+		CCNA_03285	0.75	-3.1
3,455,665	+		CCNA_03285	0.75	+0.1
3,455,705	-		CCNA_03285	0.79	-3.7
3,455,820	-				+1.0
3,455,842	-				-0.8
3,455,862	+				-1.0
3,455,870	-				-1.0
3,455,903	+				+0.8
3,455,934	-				-1.4
3,455,971	+		CCNA_03286	0.12	+1.2
3,455,971	+		CCNA_03286	0.12	-0.0
3,455,971	+		CCNA_03286	0.12	-0.0
3,455,996	+		CCNA_03286	0.16	-1.1
3,456,004	-		CCNA_03286	0.17	-3.2
3,456,004	-		CCNA_03286	0.17	-2.4
3,456,004	-		CCNA_03286	0.17	+0.6
3,456,025	+		CCNA_03286	0.20	+1.1
3,456,065	-		CCNA_03286	0.26	+0.5
3,456,143	-		CCNA_03286	0.37	-0.3
3,456,145	+		CCNA_03286	0.38	-0.8
3,456,153	-		CCNA_03286	0.39	+1.0
3,456,154	-		CCNA_03286	0.39	+0.3
3,456,164	+		CCNA_03286	0.41	-1.1
3,456,172	-		CCNA_03286	0.42	-0.4
3,456,185	-		CCNA_03286	0.44	-1.6
3,456,231	+		CCNA_03286	0.50	-3.4
3,456,243	-		CCNA_03286	0.52	-1.1
3,456,254	-		CCNA_03286	0.54	-0.6
3,456,294	+		CCNA_03286	0.60	+1.5
3,456,450	+				+1.4
3,456,450	+				-1.9
3,456,451	+				+0.1
3,456,458	-				-0.1
3,456,528	-				+2.5
3,456,618	-		CCNA_03287	0.59	+2.5
3,456,619	-		CCNA_03287	0.60	+2.3
3,456,619	-		CCNA_03287	0.60	+2.4
3,456,619	-		CCNA_03287	0.60	+2.6
3,456,619	-		CCNA_03287	0.60	+2.4
3,456,620	-		CCNA_03287	0.60	+2.8
3,456,641	-		CCNA_03287	0.67	+3.2
3,456,641	-		CCNA_03287	0.67	+2.7
3,456,666	-		CCNA_03287	0.75	+2.4
3,456,787	-				+0.1
3,456,814	-				+0.2
3,456,825	+				+0.7
3,456,825	+				+1.7
3,456,825	+				+1.7
3,456,825	+				+1.6
3,456,825	+				-1.5
3,456,825	+				+1.2
3,456,825	+				-2.0
3,456,833	-				-1.4
3,456,833	-				-1.1
3,456,851	+		CCNA_03288	0.17	+0.4
3,456,893	-		CCNA_03288	0.40	+0.4
3,456,903	-		CCNA_03288	0.45	-1.6
3,456,916	-		CCNA_03288	0.52	-3.0
3,456,927	-		CCNA_03288	0.58	+0.6
3,456,945	-		CCNA_03288	0.67	-1.8
3,456,963	+		CCNA_03288	0.77	-0.3
3,456,990	+				+0.3
3,457,256	+		CCNA_03289	0.62	+2.1
3,457,256	+		CCNA_03289	0.62	+2.2
3,457,256	+		CCNA_03289	0.62	+3.0
3,457,264	+		CCNA_03289	0.64	+2.1
3,457,266	+		CCNA_03289	0.64	+1.9
3,457,266	+		CCNA_03289	0.64	+3.2
3,457,271	+		CCNA_03289	0.66	+0.8
3,457,276	+		CCNA_03289	0.67	+3.0
3,457,286	+		CCNA_03289	0.69	-0.1
3,457,306	+		CCNA_03289	0.74	+3.1
3,457,365	+		CCNA_03289	0.89	+3.4
3,457,365	+		CCNA_03289	0.89	+3.2
3,457,401	+				-2.6
3,457,401	+				-2.4
3,457,401	+				-0.6
3,457,401	+				-0.8
3,457,401	+				-2.5
3,457,401	+				+1.1
3,457,401	+				-1.6
3,457,401	+				-3.0
3,457,401	+				-0.9
3,457,401	+				-0.1
3,457,401	+				+2.0
3,457,401	+				+3.9
3,457,401	+				+0.4
3,457,409	-				+1.6
3,457,409	-				-1.9
3,457,409	-				-0.0
3,457,409	-				+1.1
3,457,409	-				+1.5
3,457,409	-				-0.0
3,457,409	-				+0.8
3,457,409	-				+0.9
3,457,409	-				-1.0
3,457,409	-				-0.0
3,457,409	-				-1.0
3,457,409	-				-0.6
3,457,412	+				-1.4
3,457,412	+				+2.2
3,457,412	+				-1.6
3,457,420	-				+0.1
3,457,420	-				+3.2
3,457,420	-				+1.7
3,457,421	+				+0.6
3,457,429	-				+1.9
3,457,429	-				-2.3
3,457,457	+				+1.1
3,457,500	+		CCNA_03290	0.18	-0.1
3,457,500	+		CCNA_03290	0.18	+1.4
3,457,508	-		CCNA_03290	0.19	+1.5
3,457,510	+		CCNA_03290	0.20	+0.6
3,457,544	-		CCNA_03290	0.27	-1.7
3,457,562	+		CCNA_03290	0.31	-0.9
3,457,565	-				+1.6
3,457,565	-		CCNA_03290	0.31	+1.3