Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03117

Experiment: PYE with Nalidixic 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Nalidixic 0.06 mg/ml
3,265,307	-		CCNA_03115	0.51	+2.0
3,265,309	+		CCNA_03115	0.52	+0.6
3,265,359	+		CCNA_03115	0.57	-2.1
3,265,367	+		CCNA_03115	0.57	-0.5
3,265,418	+		CCNA_03115	0.62	-1.2
3,265,453	+		CCNA_03115	0.66	+2.0
3,265,458	+		CCNA_03115	0.66	-1.0
3,265,458	+		CCNA_03115	0.66	-0.4
3,265,458	+		CCNA_03115	0.66	+0.3
3,265,762	+				-1.6
3,265,767	+				+0.1
3,265,782	+				+3.1
3,265,782	+				-1.1
3,265,782	+				+2.1
3,265,790	-				-0.6
3,265,790	-				-1.0
3,265,792	+				+0.9
3,265,853	-				+0.0
3,265,879	+				-2.6
3,265,887	-				-1.5
3,265,902	+				+1.3
3,265,902	+				-0.4
3,265,910	-				+0.0
3,265,910	-				-0.7
3,265,924	+				-0.6
3,265,924	+				+0.2
3,265,924	+				-1.2
3,265,924	+				+0.9
3,265,924	+				+1.5
3,265,932	-				-2.3
3,265,932	-				-2.1
3,265,939	+		CCNA_03116	0.12	+1.8
3,265,947	-		CCNA_03116	0.16	+1.3
3,265,947	-		CCNA_03116	0.16	+0.3
3,265,980	-		CCNA_03116	0.31	-0.1
3,265,980	-		CCNA_03116	0.31	+2.6
3,265,980	-		CCNA_03116	0.31	+0.6
3,265,992	-		CCNA_03116	0.36	-1.8
3,265,992	-		CCNA_03116	0.36	+0.6
3,265,992	-		CCNA_03116	0.36	-1.3
3,265,992	-		CCNA_03116	0.36	+3.2
3,265,992	-		CCNA_03116	0.36	-0.0
3,265,992	-		CCNA_03116	0.36	+3.4
3,265,992	-		CCNA_03116	0.36	+1.2
3,265,992	-		CCNA_03116	0.36	-2.0
3,266,117	+				-0.4
3,266,129	+				+0.9
3,266,137	-				-0.5
3,266,147	-				+1.0
3,266,147	-				+0.3
3,266,147	-				-0.6
3,266,179	+				+0.3
3,266,187	-				+0.0
3,266,187	-				-0.7
3,266,195	+				-0.8
3,266,202	+				-0.2
3,266,203	-				-1.0
3,266,203	-				+1.0
3,266,207	+				+0.9
3,266,215	-				-1.7
3,266,321	-				-0.1
3,266,323	+				+0.3
3,266,323	+				-1.7
3,266,374	+		CCNA_03117	0.16	-0.8
3,266,382	-		CCNA_03117	0.17	-1.1
3,266,382	-		CCNA_03117	0.17	-1.2
3,266,388	-		CCNA_03117	0.18	-1.0
3,266,407	+		CCNA_03117	0.22	+0.3
3,266,407	+		CCNA_03117	0.22	+0.1
3,266,407	+		CCNA_03117	0.22	-0.1
3,266,415	-		CCNA_03117	0.23	-1.5
3,266,415	-		CCNA_03117	0.23	-2.8
3,266,430	+		CCNA_03117	0.26	-1.1
3,266,430	+		CCNA_03117	0.26	+0.9
3,266,434	+		CCNA_03117	0.27	-0.9
3,266,434	+		CCNA_03117	0.27	-0.9
3,266,477	+				+2.6
3,266,477	+		CCNA_03117	0.35	+2.1
3,266,477	+		CCNA_03117	0.35	+1.5
3,266,477	+		CCNA_03117	0.35	+1.1
3,266,485	-		CCNA_03117	0.36	+2.1
3,266,485	-		CCNA_03117	0.36	-1.7
3,266,487	+		CCNA_03117	0.37	-2.6
3,266,489	+		CCNA_03117	0.37	-1.1
3,266,502	+		CCNA_03117	0.39	+0.9
3,266,544	-		CCNA_03117	0.47	+0.3
3,266,566	+		CCNA_03117	0.51	+1.1
3,266,566	+		CCNA_03117	0.51	+0.5
3,266,566	+		CCNA_03117	0.51	+2.6
3,266,574	-		CCNA_03117	0.53	+2.3
3,266,607	+		CCNA_03117	0.59	-0.9
3,266,623	+		CCNA_03117	0.62	-1.6
3,266,711	-		CCNA_03117	0.78	+0.2
3,266,740	-		CCNA_03117	0.83	+0.3
3,266,749	-		CCNA_03117	0.85	+1.3
3,266,772	-		CCNA_03117	0.89	+1.1
3,266,807	+				+0.8
3,266,807	+				+0.3
3,266,816	-				-2.8
3,266,833	-				+2.6
3,266,833	-				-0.3
3,266,844	+				+1.5
3,266,881	+				-0.5
3,266,881	+				-0.6
3,266,881	+				+0.4
3,266,890	-				-0.1
3,266,959	-				+1.9
3,266,962	+				+1.7
3,266,970	-				+0.9
3,266,970	-				-1.2
3,266,985	-				+0.3
3,266,999	+				-3.1
3,267,007	-				+0.6
3,267,007	-				-2.0
3,267,007	-				-1.4
3,267,041	+				-0.5
3,267,079	+		CCNA_03118	0.15	+0.8
3,267,092	-				+1.6
3,267,132	-		CCNA_03118	0.37	-1.7
3,267,180	-		CCNA_03118	0.57	-0.3
3,267,210	-		CCNA_03118	0.70	-0.2
3,267,213	+		CCNA_03118	0.71	-0.6
3,267,214	+		CCNA_03118	0.71	-0.4
3,267,221	-		CCNA_03118	0.74	+0.8
3,267,259	+				+2.5
3,267,281	+				-1.2
3,267,382	+				+1.2
3,267,385	-				+0.5
3,267,397	-				+1.0
3,267,407	-				+2.6
3,267,433	+				+0.3
3,267,436	-				+1.5
3,267,436	-				-0.1
3,267,463	+				+1.7
3,267,482	+				+0.2
3,267,490	-				-1.1
3,267,550	-		CCNA_03119	0.17	-3.0
3,267,576	+		CCNA_03119	0.23	-2.7
3,267,584	-		CCNA_03119	0.25	+1.2
3,267,584	-		CCNA_03119	0.25	+0.4
3,267,604	+		CCNA_03119	0.30	-1.4
3,267,615	-		CCNA_03119	0.33	-0.4
3,267,621	-		CCNA_03119	0.34	+0.2
3,267,731	-		CCNA_03119	0.62	+2.0
3,267,826	-		CCNA_03119	0.86	+2.1