Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02541

Experiment: PYE with Nalidixic 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Nalidixic 0.06 mg/ml
2,690,016	+		CCNA_02540	0.47	-0.6
2,690,024	-		CCNA_02540	0.47	-0.6
2,690,024	-		CCNA_02540	0.47	+1.1
2,690,038	+		CCNA_02540	0.48	-2.3
2,690,048	+		CCNA_02540	0.49	+1.0
2,690,058	-		CCNA_02540	0.50	-0.6
2,690,129	+		CCNA_02540	0.56	-1.2
2,690,134	+		CCNA_02540	0.56	+1.0
2,690,154	+		CCNA_02540	0.57	+1.8
2,690,160	+		CCNA_02540	0.58	-2.1
2,690,221	-		CCNA_02540	0.63	-2.2
2,690,221	-		CCNA_02540	0.63	-0.8
2,690,222	+		CCNA_02540	0.63	-0.9
2,690,235	-		CCNA_02540	0.64	-0.6
2,690,249	-		CCNA_02540	0.65	-1.1
2,690,259	-		CCNA_02540	0.66	-1.6
2,690,259	-		CCNA_02540	0.66	+2.2
2,690,259	-		CCNA_02540	0.66	+1.0
2,690,259	-		CCNA_02540	0.66	-1.7
2,690,305	+		CCNA_02540	0.69	+0.2
2,690,331	-		CCNA_02540	0.71	+0.7
2,690,342	+		CCNA_02540	0.72	+1.9
2,690,349	+		CCNA_02540	0.72	+3.0
2,690,350	-		CCNA_02540	0.73	+0.8
2,690,372	+		CCNA_02540	0.74	-0.6
2,690,403	-		CCNA_02540	0.77	+0.6
2,690,413	+		CCNA_02540	0.77	+0.9
2,690,482	-		CCNA_02540	0.83	+0.8
2,690,498	+		CCNA_02540	0.84	+2.6
2,690,498	+		CCNA_02540	0.84	+0.2
2,690,500	-		CCNA_02540	0.84	-1.4
2,690,528	-		CCNA_02540	0.86	-2.0
2,690,528	-		CCNA_02540	0.86	+0.2
2,690,535	+		CCNA_02540	0.87	-0.4
2,690,535	+		CCNA_02540	0.87	-1.7
2,690,536	-		CCNA_02540	0.87	+0.1
2,690,543	-		CCNA_02540	0.87	+1.9
2,690,588	+				+1.2
2,690,588	+				-0.0
2,690,588	+				-0.8
2,690,596	-				-2.1
2,690,596	-				+1.0
2,690,603	+				-2.3
2,690,615	+				+1.2
2,690,642	+				+0.0
2,690,642	+				-1.2
2,690,665	-				+0.3
2,690,669	-				-1.4
2,690,677	-				-2.3
2,690,742	-				+0.6
2,690,765	-				-1.2
2,690,791	+				+0.2
2,690,799	-				-2.5
2,690,821	+				-0.8
2,690,829	-				+2.0
2,690,829	-				-0.6
2,690,829	-				-1.3
2,690,875	+				+2.0
2,690,908	+				+1.4
2,690,911	-				-0.8
2,690,916	-				+3.6
2,690,923	+				-1.6
2,690,927	+				-0.3
2,690,931	-				+2.5
2,690,931	-				+1.7
2,690,931	-				+1.6
2,690,932	+				-1.1
2,690,932	+				-1.3
2,690,932	+				-1.0
2,690,932	+				-0.8
2,690,932	+				+1.1
2,690,932	+				+0.4
2,690,940	-				-2.5
2,690,940	-				+0.7
2,690,940	-				-0.8
2,690,977	+				+1.7
2,691,022	-		CCNA_02541	0.11	+0.8
2,691,031	+		CCNA_02541	0.12	+1.8
2,691,061	+		CCNA_02541	0.16	-3.0
2,691,069	-		CCNA_02541	0.17	+0.9
2,691,107	-		CCNA_02541	0.22	+3.0
2,691,141	+		CCNA_02541	0.27	+0.2
2,691,183	-		CCNA_02541	0.33	-1.9
2,691,188	-		CCNA_02541	0.34	+2.5
2,691,219	-		CCNA_02541	0.38	+1.9
2,691,227	+		CCNA_02541	0.39	-1.3
2,691,235	-		CCNA_02541	0.40	-0.3
2,691,248	-		CCNA_02541	0.42	-0.4
2,691,273	+		CCNA_02541	0.45	+1.3
2,691,292	-		CCNA_02541	0.48	+1.1
2,691,294	+		CCNA_02541	0.48	-1.2
2,691,305	+		CCNA_02541	0.50	+0.3
2,691,313	-		CCNA_02541	0.51	+1.3
2,691,313	-		CCNA_02541	0.51	+1.4
2,691,313	-		CCNA_02541	0.51	+0.6
2,691,376	+		CCNA_02541	0.59	+0.2
2,691,376	+		CCNA_02541	0.59	-1.0
2,691,376	+		CCNA_02541	0.59	-1.4
2,691,379	-		CCNA_02541	0.60	-1.1
2,691,384	-		CCNA_02541	0.60	-0.9
2,691,384	-		CCNA_02541	0.60	-1.7
2,691,412	-		CCNA_02541	0.64	+1.3
2,691,529	+		CCNA_02541	0.80	-0.6
2,691,531	-		CCNA_02541	0.81	-0.6
2,691,546	+		CCNA_02541	0.83	-1.8
2,691,546	+		CCNA_02541	0.83	-0.9
2,691,546	+		CCNA_02541	0.83	-0.8
2,691,546	+		CCNA_02541	0.83	+0.8
2,691,546	+		CCNA_02541	0.83	+2.4
2,691,546	+		CCNA_02541	0.83	-1.0
2,691,546	+		CCNA_02541	0.83	-1.9
2,691,546	+		CCNA_02541	0.83	+0.6
2,691,546	+		CCNA_02541	0.83	+1.0
2,691,546	+		CCNA_02541	0.83	+0.8
2,691,546	+		CCNA_02541	0.83	+0.5
2,691,546	+		CCNA_02541	0.83	+1.0
2,691,546	+		CCNA_02541	0.83	-0.1
2,691,546	+		CCNA_02541	0.83	-0.8
2,691,546	+		CCNA_02541	0.83	+0.8
2,691,546	+		CCNA_02541	0.83	-2.0
2,691,547	+		CCNA_02541	0.83	+0.4
2,691,547	+		CCNA_02541	0.83	+1.3
2,691,554	-		CCNA_02541	0.84	+0.4
2,691,554	-		CCNA_02541	0.84	+0.1
2,691,554	-		CCNA_02541	0.84	+0.3
2,691,554	-		CCNA_02541	0.84	+0.5
2,691,554	-		CCNA_02541	0.84	-1.1
2,691,554	-		CCNA_02541	0.84	+2.5
2,691,554	-		CCNA_02541	0.84	-2.6
2,691,554	-		CCNA_02541	0.84	+1.6
2,691,554	-		CCNA_02541	0.84	-1.0
2,691,555	-		CCNA_02541	0.84	+0.4
2,691,557	+		CCNA_02541	0.84	+2.7
2,691,557	+		CCNA_02541	0.84	+0.1
2,691,557	+		CCNA_02541	0.84	-0.7
2,691,565	-		CCNA_02541	0.85	-1.3
2,691,565	-		CCNA_02541	0.85	-0.1
2,691,592	+		CCNA_02541	0.89	-1.1
2,691,608	+				+0.3
2,691,608	+				+0.6
2,691,616	+				-0.7
2,691,626	+				+2.6
2,691,626	+				-1.5
2,691,626	+				+2.9
2,691,634	-				-0.2
2,691,657	-				+0.0
2,691,665	+				+0.3
2,691,665	+				-0.9
2,691,684	+				+0.6
2,691,684	+				+1.3
2,691,684	+				-1.0
2,691,692	-				-0.1
2,691,692	-				+1.6
2,691,717	+				+3.8
2,691,725	-				-1.1
2,691,806	+		CCNA_02542	0.24	+1.6
2,691,814	-		CCNA_02542	0.25	+0.4
2,691,820	+		CCNA_02542	0.27	+1.1
2,691,856	+		CCNA_02542	0.35	+0.0
2,691,864	-		CCNA_02542	0.36	+2.3
2,691,879	-		CCNA_02542	0.40	+0.3
2,691,917	+		CCNA_02542	0.48	-1.1
2,691,925	-		CCNA_02542	0.50	-2.0
2,691,937	-		CCNA_02542	0.53	+0.4
2,691,956	+		CCNA_02542	0.57	-0.4
2,691,956	+		CCNA_02542	0.57	-0.5
2,692,003	+		CCNA_02542	0.67	-1.2
2,692,011	-		CCNA_02542	0.69	+2.4
2,692,073	+		CCNA_02542	0.83	-1.1
2,692,088	-		CCNA_02542	0.86	+2.4
2,692,468	+				+1.5
2,692,469	+				+3.2
2,692,515	-		CCNA_02544	0.16	+0.9
2,692,613	+		CCNA_02544	0.52	-1.6
2,692,613	+		CCNA_02544	0.52	-1.8
2,692,621	-		CCNA_02544	0.55	+1.7
2,692,651	+		CCNA_02544	0.66	-0.5
2,692,668	-		CCNA_02544	0.72	+0.3