Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01683

Experiment: PYE with Nalidixic 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Nalidixic 0.06 mg/ml
1,809,381	+				-0.3
1,809,456	+		CCNA_01682	0.11	-0.5
1,809,463	+		CCNA_01682	0.12	+0.6
1,809,488	+		CCNA_01682	0.14	+2.0
1,809,492	+		CCNA_01682	0.15	-0.3
1,809,513	+		CCNA_01682	0.17	-0.9
1,809,521	-		CCNA_01682	0.18	-1.5
1,809,521	-		CCNA_01682	0.18	+2.2
1,809,521	-		CCNA_01682	0.18	-0.1
1,809,521	-		CCNA_01682	0.18	+0.3
1,809,625	+		CCNA_01682	0.29	+3.1
1,809,625	+		CCNA_01682	0.29	-2.6
1,809,625	+		CCNA_01682	0.29	-1.3
1,809,635	+		CCNA_01682	0.30	-0.6
1,809,635	-		CCNA_01682	0.30	+0.5
1,809,660	+		CCNA_01682	0.33	+3.1
1,809,668	-		CCNA_01682	0.33	-0.9
1,809,677	-		CCNA_01682	0.34	-1.8
1,809,868	-		CCNA_01682	0.55	+0.7
1,809,872	+		CCNA_01682	0.55	+1.7
1,809,897	-		CCNA_01682	0.58	-2.3
1,809,962	-		CCNA_01682	0.65	+3.8
1,809,963	-		CCNA_01682	0.65	+0.3
1,810,024	-		CCNA_01682	0.71	+1.2
1,810,046	+		CCNA_01682	0.74	-0.7
1,810,069	+		CCNA_01682	0.76	-1.8
1,810,083	-		CCNA_01682	0.78	-0.3
1,810,111	-		CCNA_01682	0.81	+1.6
1,810,221	+				-0.3
1,810,221	+				+0.4
1,810,227	+				-0.7
1,810,227	+				-0.0
1,810,288	+				-0.4
1,810,288	+				-1.2
1,810,288	+				+2.8
1,810,288	+				-1.3
1,810,296	-				+0.1
1,810,296	-				-0.5
1,810,296	-				-1.3
1,810,296	-				-0.8
1,810,307	+				-1.9
1,810,342	-				+0.4
1,810,391	-				-1.7
1,810,415	-		CCNA_01683	0.10	+1.8
1,810,429	-		CCNA_01683	0.11	+1.6
1,810,517	-		CCNA_01683	0.19	+0.5
1,810,539	+		CCNA_01683	0.20	-0.4
1,810,539	+		CCNA_01683	0.20	+1.4
1,810,556	-		CCNA_01683	0.22	+0.0
1,810,590	-		CCNA_01683	0.24	-0.1
1,810,614	-		CCNA_01683	0.26	-1.8
1,810,706	+		CCNA_01683	0.34	-0.3
1,810,793	-		CCNA_01683	0.41	-1.5
1,810,806	-		CCNA_01683	0.42	-0.0
1,810,823	+		CCNA_01683	0.44	+0.3
1,810,837	-		CCNA_01683	0.45	-1.4
1,810,852	+		CCNA_01683	0.46	-2.9
1,810,866	+		CCNA_01683	0.47	-1.4
1,810,887	+		CCNA_01683	0.49	-2.2
1,810,938	+		CCNA_01683	0.53	+0.0
1,810,996	+		CCNA_01683	0.58	-1.0
1,811,009	+		CCNA_01683	0.59	+2.4
1,811,009	+		CCNA_01683	0.59	-1.7
1,811,009	+		CCNA_01683	0.59	+0.5
1,811,009	+		CCNA_01683	0.59	+6.5
1,811,017	-		CCNA_01683	0.59	+0.5
1,811,017	-		CCNA_01683	0.59	+2.3
1,811,017	-				+2.6
1,811,019	+		CCNA_01683	0.60	+1.5
1,811,032	-		CCNA_01683	0.61	+1.7
1,811,032	-		CCNA_01683	0.61	-2.8
1,811,068	+		CCNA_01683	0.64	-0.1
1,811,088	+		CCNA_01683	0.65	-0.4
1,811,088	+		CCNA_01683	0.65	-0.5
1,811,188	+		CCNA_01683	0.73	+2.2
1,811,188	+		CCNA_01683	0.73	-1.8
1,811,196	-		CCNA_01683	0.74	+2.4
1,811,196	-		CCNA_01683	0.74	+0.4
1,811,196	-		CCNA_01683	0.74	-1.0
1,811,196	-		CCNA_01683	0.74	+1.4
1,811,201	-		CCNA_01683	0.75	-0.5
1,811,212	+		CCNA_01683	0.75	-2.3
1,811,220	-		CCNA_01683	0.76	+1.1
1,811,220	-		CCNA_01683	0.76	-0.0
1,811,225	+		CCNA_01683	0.76	+0.1
1,811,247	+		CCNA_01683	0.78	-0.2
1,811,308	+		CCNA_01683	0.83	+1.9
1,811,310	-		CCNA_01683	0.83	+0.8
1,811,367	-		CCNA_01683	0.88	+1.5
1,811,425	-				+1.8
1,811,454	-				+1.2
1,811,477	-				+1.9
1,811,506	+				+0.8
1,811,506	+				-1.4
1,811,513	+				-1.5
1,811,514	-				+2.1
1,811,514	-				+1.5
1,811,514	-				-1.8
1,811,514	-				+1.4
1,811,526	+				-2.5
1,811,623	-		CCNA_01684	0.18	+2.7
1,811,685	-		CCNA_01684	0.25	+2.8
1,811,716	-		CCNA_01684	0.28	+3.3
1,811,716	-		CCNA_01684	0.28	+3.0
1,811,731	-		CCNA_01684	0.30	+2.2
1,811,800	-		CCNA_01684	0.38	+1.4
1,811,817	-		CCNA_01684	0.40	+2.0
1,811,823	+		CCNA_01684	0.40	-1.3
1,811,868	+		CCNA_01684	0.45	+0.6
1,811,953	-		CCNA_01684	0.55	+2.9
1,811,970	-		CCNA_01684	0.57	+1.8
1,812,018	-		CCNA_01684	0.62	+3.5
1,812,023	-		CCNA_01684	0.63	+3.7
1,812,112	+		CCNA_01684	0.73	+2.4
1,812,120	-		CCNA_01684	0.74	-0.5
1,812,120	-		CCNA_01684	0.74	+0.8
1,812,159	+		CCNA_01684	0.78	-0.5
1,812,172	-		CCNA_01684	0.80	-0.9
1,812,172	-		CCNA_01684	0.80	+2.2
1,812,174	+		CCNA_01684	0.80	-1.9
1,812,215	-		CCNA_01684	0.85	+2.3
1,812,256	+		CCNA_01684	0.89	+0.2
1,812,266	+				+0.5
1,812,274	-				+1.4
1,812,274	-				+2.3
1,812,277	+				-0.1
1,812,330	+				+0.7
1,812,338	-				+1.3
1,812,356	-				+2.3
1,812,357	+				+2.8
1,812,423	+				-1.7