Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01586

Experiment: PYE with Nalidixic 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Nalidixic 0.06 mg/ml
1,703,586	+		CCNA_01585	0.59	-1.7
1,703,590	-		CCNA_01585	0.59	+0.8
1,703,596	+		CCNA_01585	0.60	-0.4
1,703,598	+		CCNA_01585	0.60	-0.0
1,703,629	+		CCNA_01585	0.61	+0.1
1,703,629	+		CCNA_01585	0.61	+1.8
1,703,631	+		CCNA_01585	0.61	+2.7
1,703,641	-		CCNA_01585	0.62	+3.2
1,703,653	+		CCNA_01585	0.62	+0.0
1,703,661	-		CCNA_01585	0.63	+2.2
1,703,700	+		CCNA_01585	0.65	-0.4
1,703,700	+		CCNA_01585	0.65	+1.8
1,703,707	+		CCNA_01585	0.65	-0.3
1,703,707	+		CCNA_01585	0.65	-0.4
1,703,707	+		CCNA_01585	0.65	-0.9
1,703,715	-		CCNA_01585	0.65	+0.8
1,703,715	-		CCNA_01585	0.65	+2.4
1,703,715	-		CCNA_01585	0.65	+2.0
1,703,715	-		CCNA_01585	0.65	+2.7
1,703,715	-		CCNA_01585	0.65	+1.1
1,703,715	-		CCNA_01585	0.65	-0.0
1,703,715	-		CCNA_01585	0.65	+0.2
1,703,715	-		CCNA_01585	0.65	+0.3
1,703,715	-		CCNA_01585	0.65	+1.9
1,703,749	-		CCNA_01585	0.67	-0.2
1,703,752	+		CCNA_01585	0.67	-0.7
1,703,752	+		CCNA_01585	0.67	+2.1
1,703,830	-		CCNA_01585	0.71	+0.7
1,703,856	+		CCNA_01585	0.72	-1.7
1,703,856	+		CCNA_01585	0.72	-0.2
1,703,856	+		CCNA_01585	0.72	-1.2
1,703,864	-		CCNA_01585	0.72	-0.2
1,703,864	-		CCNA_01585	0.72	-0.8
1,703,874	-		CCNA_01585	0.73	-0.7
1,703,878	+		CCNA_01585	0.73	+1.1
1,703,905	+		CCNA_01585	0.74	-0.7
1,703,913	-		CCNA_01585	0.75	-1.1
1,703,913	-		CCNA_01585	0.75	-0.3
1,703,928	-		CCNA_01585	0.76	-2.7
1,703,991	-		CCNA_01585	0.79	+2.0
1,704,012	+		CCNA_01585	0.80	-0.4
1,704,020	+		CCNA_01585	0.80	-0.7
1,704,103	-		CCNA_01585	0.84	-1.2
1,704,107	+		CCNA_01585	0.84	-1.0
1,704,114	-		CCNA_01585	0.84	+0.5
1,704,115	-		CCNA_01585	0.84	-0.9
1,704,144	-		CCNA_01585	0.86	+1.0
1,704,165	+		CCNA_01585	0.87	+0.3
1,704,165	-		CCNA_01585	0.87	+0.8
1,704,198	-		CCNA_01585	0.88	+0.8
1,704,259	-				+0.2
1,704,302	-				+3.1
1,704,344	-				+0.5
1,704,347	+				+0.4
1,704,352	+				+1.7
1,704,352	+				-1.8
1,704,352	+				-0.9
1,704,360	-				+0.5
1,704,360	-				-0.3
1,704,360	-				-1.1
1,704,360	-				+0.7
1,704,360	-				-0.7
1,704,384	+				+1.1
1,704,416	+				+0.6
1,704,425	-				-1.6
1,704,460	+				+0.3
1,704,462	+				+0.6
1,704,462	+				+0.3
1,704,463	+				+1.5
1,704,475	-				-1.6
1,704,550	+				+1.2
1,704,553	+				+0.1
1,704,560	+				-0.3
1,704,561	+				-0.2
1,704,564	+				+3.7
1,704,568	-				-0.6
1,704,569	-				+1.5
1,704,569	-				+0.5
1,704,569	-				+1.3
1,704,626	+				+3.7
1,704,626	+				-0.9
1,704,668	+		CCNA_01586	0.11	-1.8
1,704,673	+		CCNA_01586	0.12	+0.5
1,704,683	+		CCNA_01586	0.13	-2.2
1,704,683	+		CCNA_01586	0.13	+0.8
1,704,683	+		CCNA_01586	0.13	+2.3
1,704,683	+		CCNA_01586	0.13	-0.8
1,704,740	+		CCNA_01586	0.21	+0.2
1,704,753	-		CCNA_01586	0.23	-1.1
1,704,835	-		CCNA_01586	0.34	+0.9
1,704,835	-		CCNA_01586	0.34	-0.4
1,704,929	+		CCNA_01586	0.47	-0.6
1,704,941	-		CCNA_01586	0.49	-0.2
1,704,977	-		CCNA_01586	0.54	-1.2
1,704,984	+		CCNA_01586	0.55	-0.1
1,705,001	+		CCNA_01586	0.57	+0.2
1,705,035	+		CCNA_01586	0.62	-1.3
1,705,043	-		CCNA_01586	0.63	-1.1
1,705,043	-		CCNA_01586	0.63	-0.9
1,705,068	+		CCNA_01586	0.67	-0.3
1,705,074	+		CCNA_01586	0.67	-0.8
1,705,074	+		CCNA_01586	0.67	-0.4
1,705,118	+		CCNA_01586	0.73	-0.6
1,705,212	-		CCNA_01586	0.86	+0.5
1,705,249	+				-0.8
1,705,249	+				+1.1
1,705,265	-				-1.1
1,705,275	+				-0.5
1,705,342	+				+0.9
1,705,376	+				+1.6
1,705,377	+				+1.0
1,705,393	-				-0.6
1,705,394	+				+2.0
1,705,453	+		CCNA_01587	0.10	-1.3
1,705,460	+		CCNA_01587	0.11	-0.3
1,705,486	-		CCNA_01587	0.12	+3.6
1,705,497	+		CCNA_01587	0.13	-0.4
1,705,516	-		CCNA_01587	0.14	+1.5
1,705,526	-		CCNA_01587	0.15	+0.8
1,705,625	+		CCNA_01587	0.22	+0.7
1,705,625	+		CCNA_01587	0.22	-0.5
1,705,625	+		CCNA_01587	0.22	+0.3
1,705,625	+		CCNA_01587	0.22	+0.9
1,705,628	-		CCNA_01587	0.22	-0.0
1,705,628	-		CCNA_01587	0.22	+1.3
1,705,650	-		CCNA_01587	0.24	-1.4
1,705,663	-		CCNA_01587	0.25	+1.3
1,705,663	-		CCNA_01587	0.25	-0.1
1,705,685	-		CCNA_01587	0.26	+3.2
1,705,687	+		CCNA_01587	0.26	-1.0
1,705,687	+		CCNA_01587	0.26	+1.9
1,705,687	+		CCNA_01587	0.26	+0.4
1,705,695	-		CCNA_01587	0.27	-1.3
1,705,708	+		CCNA_01587	0.28	+1.2
1,705,817	+		CCNA_01587	0.35	+3.7
1,705,820	+		CCNA_01587	0.35	+1.0
1,705,825	-		CCNA_01587	0.36	+0.1
1,705,830	-		CCNA_01587	0.36	+0.7
1,705,842	+		CCNA_01587	0.37	-0.9
1,705,864	-		CCNA_01587	0.38	+0.3
1,705,884	+		CCNA_01587	0.40	-0.5
1,705,956	-		CCNA_01587	0.45	-0.0
1,705,956	-		CCNA_01587	0.45	-1.4
1,705,978	-		CCNA_01587	0.46	+0.7
1,705,979	+		CCNA_01587	0.46	+3.3
1,706,029	+		CCNA_01587	0.50	+0.7
1,706,122	+		CCNA_01587	0.56	-0.6
1,706,153	-		CCNA_01587	0.58	+2.5
1,706,240	-		CCNA_01587	0.64	-0.9
1,706,273	-		CCNA_01587	0.67	+0.4
1,706,301	+		CCNA_01587	0.69	-1.1
1,706,302	-		CCNA_01587	0.69	-1.6