Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01041

Experiment: PYE with Nalidixic 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Nalidixic 0.06 mg/ml
1,135,583	+		CCNA_01040	0.40	+0.7
1,135,591	-		CCNA_01040	0.40	+2.3
1,135,591	-		CCNA_01040	0.40	-1.8
1,135,610	-		CCNA_01040	0.41	+1.3
1,135,620	-		CCNA_01040	0.42	+0.3
1,135,637	-		CCNA_01040	0.43	-0.5
1,135,640	-		CCNA_01040	0.43	-1.7
1,135,653	+		CCNA_01040	0.44	-2.3
1,135,657	+		CCNA_01040	0.44	+0.5
1,135,661	-				+1.5
1,135,661	-		CCNA_01040	0.45	-0.4
1,135,661	-		CCNA_01040	0.45	+1.3
1,135,696	-		CCNA_01040	0.47	+0.4
1,135,748	+		CCNA_01040	0.50	-0.3
1,135,754	-		CCNA_01040	0.50	-2.5
1,135,754	-		CCNA_01040	0.50	-0.6
1,135,754	-		CCNA_01040	0.50	-0.2
1,135,756	+		CCNA_01040	0.50	-1.8
1,135,790	+		CCNA_01040	0.52	-1.2
1,135,798	-		CCNA_01040	0.53	+0.2
1,135,820	-		CCNA_01040	0.54	+0.3
1,135,822	+		CCNA_01040	0.54	-2.4
1,135,863	-		CCNA_01040	0.57	-1.3
1,135,868	-		CCNA_01040	0.57	+0.1
1,135,868	-		CCNA_01040	0.57	+1.3
1,135,868	-		CCNA_01040	0.57	+0.5
1,135,868	-		CCNA_01040	0.57	+0.9
1,135,898	-		CCNA_01040	0.59	+2.1
1,135,909	+		CCNA_01040	0.60	-1.7
1,135,917	-		CCNA_01040	0.60	-2.0
1,135,950	+		CCNA_01040	0.62	+1.2
1,136,001	+		CCNA_01040	0.65	+0.5
1,136,051	+		CCNA_01040	0.68	-0.3
1,136,051	+		CCNA_01040	0.68	-1.5
1,136,051	+		CCNA_01040	0.68	-0.3
1,136,059	-		CCNA_01040	0.69	-1.7
1,136,059	-		CCNA_01040	0.69	-0.8
1,136,059	-		CCNA_01040	0.69	-1.0
1,136,061	-		CCNA_01040	0.69	+0.5
1,136,063	+				+2.5
1,136,071	-		CCNA_01040	0.70	+0.9
1,136,082	-		CCNA_01040	0.70	+1.9
1,136,085	+		CCNA_01040	0.70	+1.9
1,136,104	+		CCNA_01040	0.72	-0.3
1,136,117	-		CCNA_01040	0.72	-1.8
1,136,131	-		CCNA_01040	0.73	+0.3
1,136,139	-		CCNA_01040	0.74	-1.3
1,136,162	+		CCNA_01040	0.75	-2.4
1,136,170	-		CCNA_01040	0.76	+1.0
1,136,170	-		CCNA_01040	0.76	-0.2
1,136,184	+		CCNA_01040	0.76	+2.0
1,136,242	+		CCNA_01040	0.80	+2.1
1,136,243	+		CCNA_01040	0.80	-0.8
1,136,251	-		CCNA_01040	0.81	+0.1
1,136,251	-		CCNA_01040	0.81	+0.8
1,136,315	+		CCNA_01040	0.84	-1.6
1,136,321	-		CCNA_01040	0.85	-0.1
1,136,321	-		CCNA_01040	0.85	-1.5
1,136,345	-		CCNA_01040	0.86	+1.2
1,136,365	-		CCNA_01040	0.88	+0.4
1,136,426	-				+1.2
1,136,452	+				-0.5
1,136,529	+				+1.3
1,136,529	+				+0.0
1,136,537	-				-0.4
1,136,552	+				+1.0
1,136,598	+		CCNA_01041	0.21	+1.5
1,136,606	-		CCNA_01041	0.27	-1.0
1,136,606	-		CCNA_01041	0.27	+1.9
1,136,606	-		CCNA_01041	0.27	+1.1
1,136,671	+		CCNA_01041	0.75	-1.7
1,136,671	+		CCNA_01041	0.75	+0.2
1,136,671	+		CCNA_01041	0.75	+2.5
1,136,671	+		CCNA_01041	0.75	-2.6
1,136,679	-		CCNA_01041	0.81	+0.6
1,136,720	+				+0.7
1,136,739	+				-2.1
1,136,739	+				-0.4
1,136,739	+				-1.6
1,136,739	+				-2.7
1,136,747	-				-1.3
1,136,747	-				-0.2
1,136,747	-				-0.1
1,136,748	-				+0.3
1,136,752	+				+2.9
1,136,828	-				-0.6
1,136,844	+				+1.5
1,136,872	+				+2.0
1,136,880	-				-0.4
1,136,880	-				-4.1
1,136,888	-				-0.1
1,136,926	-				-3.1
1,136,932	-				+1.3
1,136,934	+				+0.3
1,136,934	+				-1.3
1,136,934	+				-0.3
1,136,942	-				-0.8
1,136,944	+				+4.5
1,136,952	-				-0.4
1,136,963	-				+1.5
1,136,990	+				-1.2
1,137,008	-				-0.4
1,137,093	-				-0.3
1,137,098	-				+1.7
1,137,101	+				-1.4
1,137,119	+				+2.0
1,137,127	-				+1.2
1,137,128	-				+0.6
1,137,161	+				-0.7
1,137,161	+				-1.9
1,137,161	+				-2.0
1,137,161	+				+0.5
1,137,169	-				+0.1
1,137,169	-				+1.5
1,137,205	-				-2.5
1,137,207	-				+0.7
1,137,264	-				+1.2
1,137,265	+				-0.9
1,137,271	-				+0.2
1,137,273	-				-1.0
1,137,274	+				-0.3
1,137,284	+				-0.0
1,137,333	+				+1.7
1,137,333	+				-2.1
1,137,362	-				+2.8
1,137,363	-				-1.6
1,137,363	-				-0.1
1,137,368	-				-0.1
1,137,373	-				+1.7
1,137,376	-				+1.1
1,137,396	+				-0.3
1,137,404	-				-1.6
1,137,421	-				+1.4
1,137,465	+				-0.8
1,137,474	-				-1.3
1,137,505	-				-4.4
1,137,510	+				+1.3
1,137,510	+				+2.1
1,137,516	+				-1.6
1,137,516	+				-2.0
1,137,524	-		CCNA_01042	0.10	+0.8
1,137,524	-		CCNA_01042	0.10	+2.4
1,137,524	-		CCNA_01042	0.10	+2.7
1,137,524	-		CCNA_01042	0.10	+2.3
1,137,524	-		CCNA_01042	0.10	-1.4
1,137,531	+		CCNA_01042	0.11	+1.6
1,137,531	+		CCNA_01042	0.11	-1.2
1,137,584	-		CCNA_01042	0.13	+0.5
1,137,584	-		CCNA_01042	0.13	-0.2
1,137,584	-		CCNA_01042	0.13	-2.8
1,137,621	-		CCNA_01042	0.14	-0.3
1,137,632	+		CCNA_01042	0.15	-0.2
1,137,640	-		CCNA_01042	0.15	-1.8
1,137,651	+		CCNA_01042	0.15	+0.3
1,137,676	+		CCNA_01042	0.16	-2.2
1,137,677	-		CCNA_01042	0.16	-0.4
1,137,678	+		CCNA_01042	0.16	-1.6
1,137,684	-		CCNA_01042	0.17	-0.1
1,137,684	-		CCNA_01042	0.17	-3.5
1,137,684	-		CCNA_01042	0.17	+2.8