Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00913

Experiment: PYE with Nalidixic 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00912 and CCNA_00913 are separated by 49 nucleotidesCCNA_00913 and CCNA_00914 are separated by 78 nucleotidesCCNA_00914 and CCNA_00915 are separated by 131 nucleotides CCNA_00912: CCNA_00912 - beta-lactamase family protein, at 991,916 to 992,983 _00912 CCNA_00913: CCNA_00913 - hypothetical protein, at 993,033 to 993,209 _00913 CCNA_00914: CCNA_00914 - acetyltransferase, at 993,288 to 993,815 _00914 CCNA_00915: CCNA_00915 - Molybdenum cofactor sulfurase related protein, at 993,947 to 994,708 _00915 Position (kb) 993 994Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 992.039 kb on - strand, within CCNA_00912at 992.062 kb on - strand, within CCNA_00912at 992.107 kb on - strand, within CCNA_00912at 992.160 kb on + strand, within CCNA_00912at 992.166 kb on - strand, within CCNA_00912at 992.198 kb on - strand, within CCNA_00912at 992.227 kb on - strand, within CCNA_00912at 992.244 kb on + strand, within CCNA_00912at 992.284 kb on - strand, within CCNA_00912at 992.296 kb on - strand, within CCNA_00912at 992.314 kb on - strand, within CCNA_00912at 992.349 kb on + strand, within CCNA_00912at 992.349 kb on + strand, within CCNA_00912at 992.349 kb on + strand, within CCNA_00912at 992.349 kb on + strand, within CCNA_00912at 992.357 kb on - strand, within CCNA_00912at 992.357 kb on - strand, within CCNA_00912at 992.357 kb on - strand, within CCNA_00912at 992.357 kb on - strand, within CCNA_00912at 992.357 kb on - strand, within CCNA_00912at 992.416 kb on - strand, within CCNA_00912at 992.444 kb on - strand, within CCNA_00912at 992.446 kb on - strand, within CCNA_00912at 992.469 kb on + strand, within CCNA_00912at 992.485 kb on + strand, within CCNA_00912at 992.485 kb on + strand, within CCNA_00912at 992.485 kb on + strand, within CCNA_00912at 992.487 kb on - strand, within CCNA_00912at 992.493 kb on - strand, within CCNA_00912at 992.517 kb on + strand, within CCNA_00912at 992.536 kb on + strand, within CCNA_00912at 992.543 kb on - strand, within CCNA_00912at 992.587 kb on - strand, within CCNA_00912at 992.589 kb on - strand, within CCNA_00912at 992.626 kb on - strand, within CCNA_00912at 992.626 kb on - strand, within CCNA_00912at 992.639 kb on + strand, within CCNA_00912at 992.640 kb on + strand, within CCNA_00912at 992.640 kb on + strand, within CCNA_00912at 992.640 kb on + strand, within CCNA_00912at 992.640 kb on + strand, within CCNA_00912at 992.640 kb on + strand, within CCNA_00912at 992.647 kb on - strand, within CCNA_00912at 992.648 kb on - strand, within CCNA_00912at 992.648 kb on - strand, within CCNA_00912at 992.648 kb on - strand, within CCNA_00912at 992.648 kb on - strand, within CCNA_00912at 992.648 kb on - strand, within CCNA_00912at 992.657 kb on - strand, within CCNA_00912at 992.691 kb on + strand, within CCNA_00912at 992.699 kb on - strand, within CCNA_00912at 992.783 kb on - strand, within CCNA_00912at 992.828 kb on + strand, within CCNA_00912at 992.841 kb on - strand, within CCNA_00912at 992.860 kb on + strand, within CCNA_00912at 992.863 kb on - strand, within CCNA_00912at 992.868 kb on - strand, within CCNA_00912at 992.868 kb on - strand, within CCNA_00912at 992.868 kb on - strand, within CCNA_00912at 992.883 kb on - strandat 992.888 kb on + strandat 992.903 kb on + strandat 992.911 kb on - strandat 992.912 kb on + strandat 992.962 kb on + strandat 993.007 kb on - strandat 993.007 kb on - strandat 993.012 kb on - strandat 993.023 kb on - strandat 993.041 kb on + strandat 993.044 kb on - strandat 993.059 kb on - strand, within CCNA_00913at 993.085 kb on + strand, within CCNA_00913at 993.093 kb on - strand, within CCNA_00913at 993.093 kb on - strand, within CCNA_00913at 993.093 kb on - strand, within CCNA_00913at 993.133 kb on - strand, within CCNA_00913at 993.138 kb on - strand, within CCNA_00913at 993.138 kb on - strand, within CCNA_00913at 993.146 kb on + strand, within CCNA_00913at 993.173 kb on - strand, within CCNA_00913at 993.175 kb on - strand, within CCNA_00913at 993.206 kb on + strandat 993.218 kb on - strandat 993.241 kb on + strandat 993.323 kb on - strandat 993.327 kb on - strandat 993.346 kb on - strand, within CCNA_00914at 993.366 kb on + strand, within CCNA_00914at 993.374 kb on - strand, within CCNA_00914at 993.374 kb on - strand, within CCNA_00914at 993.448 kb on + strand, within CCNA_00914at 993.455 kb on - strand, within CCNA_00914at 993.456 kb on - strand, within CCNA_00914at 993.474 kb on + strand, within CCNA_00914at 993.474 kb on + strand, within CCNA_00914at 993.474 kb on + strand, within CCNA_00914at 993.474 kb on + strand, within CCNA_00914at 993.474 kb on + strand, within CCNA_00914at 993.482 kb on - strand, within CCNA_00914at 993.500 kb on - strand, within CCNA_00914at 993.515 kb on - strand, within CCNA_00914at 993.527 kb on - strand, within CCNA_00914at 993.533 kb on + strand, within CCNA_00914at 993.551 kb on - strand, within CCNA_00914at 993.555 kb on + strand, within CCNA_00914at 993.558 kb on + strand, within CCNA_00914at 993.607 kb on + strand, within CCNA_00914at 993.610 kb on - strand, within CCNA_00914at 993.610 kb on - strand, within CCNA_00914at 993.617 kb on + strand, within CCNA_00914at 993.627 kb on + strand, within CCNA_00914at 993.627 kb on + strand, within CCNA_00914at 993.627 kb on + strand, within CCNA_00914at 993.627 kb on + strand, within CCNA_00914at 993.636 kb on + strand, within CCNA_00914at 993.646 kb on + strand, within CCNA_00914at 993.704 kb on - strand, within CCNA_00914at 993.718 kb on + strand, within CCNA_00914at 993.723 kb on + strand, within CCNA_00914at 993.723 kb on + strand, within CCNA_00914at 993.723 kb on + strand, within CCNA_00914at 993.723 kb on + strand, within CCNA_00914at 993.723 kb on + strand, within CCNA_00914at 993.723 kb on + strand, within CCNA_00914at 993.725 kb on - strand, within CCNA_00914at 993.731 kb on - strand, within CCNA_00914at 993.754 kb on + strand, within CCNA_00914at 993.762 kb on - strand, within CCNA_00914at 993.762 kb on - strand, within CCNA_00914at 993.764 kb on - strandat 993.783 kb on + strandat 993.783 kb on + strandat 993.790 kb on + strandat 993.790 kb on + strandat 993.790 kb on + strandat 993.791 kb on - strandat 993.798 kb on - strandat 993.798 kb on - strandat 993.821 kb on + strandat 993.821 kb on + strandat 993.829 kb on - strandat 993.829 kb on - strandat 993.831 kb on - strandat 993.839 kb on - strandat 993.839 kb on - strandat 993.897 kb on - strandat 993.937 kb on + strandat 993.991 kb on - strandat 993.999 kb on - strandat 994.054 kb on + strand, within CCNA_00915at 994.054 kb on + strand, within CCNA_00915at 994.054 kb on + strand, within CCNA_00915at 994.057 kb on - strand, within CCNA_00915at 994.062 kb on - strand, within CCNA_00915at 994.130 kb on + strand, within CCNA_00915at 994.135 kb on + strand, within CCNA_00915at 994.138 kb on - strand, within CCNA_00915at 994.143 kb on - strand, within CCNA_00915at 994.169 kb on + strand, within CCNA_00915at 994.188 kb on - strand, within CCNA_00915

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Nalidixic 0.06 mg/ml
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992,039 - CCNA_00912 0.12 +0.6
992,062 - CCNA_00912 0.14 +2.2
992,107 - CCNA_00912 0.18 +0.2
992,160 + CCNA_00912 0.23 +0.3
992,166 - CCNA_00912 0.23 -2.4
992,198 - CCNA_00912 0.26 +1.3
992,227 - CCNA_00912 0.29 -0.2
992,244 + CCNA_00912 0.31 +0.3
992,284 - CCNA_00912 0.34 -0.6
992,296 - CCNA_00912 0.36 -1.0
992,314 - CCNA_00912 0.37 +0.9
992,349 + CCNA_00912 0.41 -1.3
992,349 + CCNA_00912 0.41 +0.7
992,349 + CCNA_00912 0.41 -0.4
992,349 + CCNA_00912 0.41 -0.5
992,357 - CCNA_00912 0.41 -0.4
992,357 - CCNA_00912 0.41 +2.4
992,357 - CCNA_00912 0.41 +1.5
992,357 - CCNA_00912 0.41 +1.4
992,357 - CCNA_00912 0.41 -0.9
992,416 - CCNA_00912 0.47 -1.8
992,444 - CCNA_00912 0.49 +1.5
992,446 - CCNA_00912 0.50 -0.1
992,469 + CCNA_00912 0.52 -2.0
992,485 + CCNA_00912 0.53 +0.3
992,485 + CCNA_00912 0.53 +0.6
992,485 + CCNA_00912 0.53 +2.2
992,487 - CCNA_00912 0.53 -1.0
992,493 - CCNA_00912 0.54 -0.4
992,517 + CCNA_00912 0.56 +0.3
992,536 + CCNA_00912 0.58 -0.7
992,543 - CCNA_00912 0.59 +0.4
992,587 - CCNA_00912 0.63 -0.2
992,589 - CCNA_00912 0.63 +3.0
992,626 - CCNA_00912 0.66 +0.1
992,626 - CCNA_00912 0.66 +2.1
992,639 + CCNA_00912 0.68 +0.2
992,640 + CCNA_00912 0.68 +1.3
992,640 + CCNA_00912 0.68 -1.7
992,640 + CCNA_00912 0.68 -1.1
992,640 + CCNA_00912 0.68 +1.2
992,640 + CCNA_00912 0.68 -1.3
992,647 - CCNA_00912 0.68 +2.3
992,648 - CCNA_00912 0.69 -1.4
992,648 - CCNA_00912 0.69 +2.1
992,648 - CCNA_00912 0.69 +0.5
992,648 - CCNA_00912 0.69 -1.3
992,648 - CCNA_00912 0.69 +0.8
992,657 - CCNA_00912 0.69 -0.4
992,691 + CCNA_00912 0.73 -1.1
992,699 - CCNA_00912 0.73 +1.3
992,783 - CCNA_00912 0.81 +0.6
992,828 + CCNA_00912 0.85 -0.1
992,841 - CCNA_00912 0.87 +0.6
992,860 + CCNA_00912 0.88 -0.9
992,863 - CCNA_00912 0.89 -1.0
992,868 - CCNA_00912 0.89 -0.3
992,868 - CCNA_00912 0.89 +0.2
992,868 - CCNA_00912 0.89 +2.3
992,883 - -0.4
992,888 + -0.4
992,903 + +1.1
992,911 - -0.8
992,912 + +2.6
992,962 + +1.0
993,007 - +2.8
993,007 - -0.7
993,012 - -1.0
993,023 - +3.3
993,041 + -1.3
993,044 - -0.8
993,059 - CCNA_00913 0.15 +0.6
993,085 + CCNA_00913 0.29 -0.2
993,093 - CCNA_00913 0.34 +2.6
993,093 - CCNA_00913 0.34 +2.6
993,093 - CCNA_00913 0.34 -1.5
993,133 - CCNA_00913 0.56 -1.7
993,138 - CCNA_00913 0.59 +0.5
993,138 - CCNA_00913 0.59 +0.9
993,146 + CCNA_00913 0.64 -2.6
993,173 - CCNA_00913 0.79 +1.7
993,175 - CCNA_00913 0.80 -1.1
993,206 + +2.1
993,218 - -0.1
993,241 + +0.3
993,323 - -1.3
993,327 - -0.4
993,346 - CCNA_00914 0.11 +0.0
993,366 + CCNA_00914 0.15 -2.5
993,374 - CCNA_00914 0.16 +0.8
993,374 - CCNA_00914 0.16 +2.6
993,448 + CCNA_00914 0.30 -0.7
993,455 - CCNA_00914 0.32 -0.7
993,456 - CCNA_00914 0.32 -0.4
993,474 + CCNA_00914 0.35 -0.2
993,474 + CCNA_00914 0.35 -0.9
993,474 + CCNA_00914 0.35 +1.1
993,474 + CCNA_00914 0.35 -0.6
993,474 + CCNA_00914 0.35 -1.3
993,482 - CCNA_00914 0.37 +1.7
993,500 - CCNA_00914 0.40 +0.2
993,515 - CCNA_00914 0.43 -0.1
993,527 - CCNA_00914 0.45 +2.1
993,533 + CCNA_00914 0.46 -0.9
993,551 - CCNA_00914 0.50 -3.1
993,555 + CCNA_00914 0.51 +0.2
993,558 + CCNA_00914 0.51 +2.1
993,607 + CCNA_00914 0.60 +0.5
993,610 - CCNA_00914 0.61 -0.7
993,610 - CCNA_00914 0.61 -1.4
993,617 + CCNA_00914 0.62 +0.1
993,627 + CCNA_00914 0.64 -1.4
993,627 + CCNA_00914 0.64 +0.6
993,627 + CCNA_00914 0.64 +1.2
993,627 + CCNA_00914 0.64 -0.4
993,636 + CCNA_00914 0.66 -0.2
993,646 + CCNA_00914 0.68 +0.3
993,704 - CCNA_00914 0.79 +0.5
993,718 + CCNA_00914 0.81 -1.6
993,723 + CCNA_00914 0.82 +0.3
993,723 + CCNA_00914 0.82 -0.2
993,723 + CCNA_00914 0.82 +1.4
993,723 + CCNA_00914 0.82 -0.8
993,723 + CCNA_00914 0.82 +0.9
993,723 + CCNA_00914 0.82 +3.6
993,725 - CCNA_00914 0.83 +0.9
993,731 - CCNA_00914 0.84 -1.4
993,754 + CCNA_00914 0.88 -0.5
993,762 - CCNA_00914 0.90 +1.9
993,762 - CCNA_00914 0.90 -0.9
993,764 - +1.1
993,783 + -0.8
993,783 + +0.8
993,790 + +0.1
993,790 + +1.3
993,790 + -0.4
993,791 - +0.7
993,798 - +1.2
993,798 - +4.5
993,821 + -1.4
993,821 + -1.4
993,829 - +1.3
993,829 - -0.6
993,831 - +2.2
993,839 - -0.9
993,839 - +1.9
993,897 - -0.1
993,937 + -0.9
993,991 - +0.8
993,999 - -0.5
994,054 + CCNA_00915 0.14 -1.7
994,054 + CCNA_00915 0.14 -3.0
994,054 + CCNA_00915 0.14 +1.1
994,057 - CCNA_00915 0.14 -0.1
994,062 - CCNA_00915 0.15 -0.9
994,130 + CCNA_00915 0.24 +1.9
994,135 + CCNA_00915 0.25 +0.7
994,138 - CCNA_00915 0.25 -1.4
994,143 - CCNA_00915 0.26 -1.4
994,169 + CCNA_00915 0.29 +0.9
994,188 - CCNA_00915 0.32 -0.3

Or see this region's nucleotide sequence