Experiment: PYE with Nalidixic 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00696 and CCNA_00698 are separated by 513 nucleotides CCNA_00698 and CCNA_00699 are separated by 265 nucleotides
CCNA_00696: CCNA_00696 - O6-methylguanine-DNA methyltransferase, at 756,229 to 756,804
_00696
CCNA_00698: CCNA_00698 - hypothetical protein, at 757,318 to 757,815
_00698
CCNA_00699: CCNA_00699 - LSU ribosomal protein L28P, at 758,081 to 758,380
_00699
Position (kb) 757
758 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 756.318 kb on + strand, within CCNA_00696 at 756.323 kb on - strand, within CCNA_00696 at 756.326 kb on - strand, within CCNA_00696 at 756.329 kb on + strand, within CCNA_00696 at 756.337 kb on - strand, within CCNA_00696 at 756.344 kb on + strand, within CCNA_00696 at 756.363 kb on + strand, within CCNA_00696 at 756.371 kb on + strand, within CCNA_00696 at 756.371 kb on - strand, within CCNA_00696 at 756.376 kb on + strand, within CCNA_00696 at 756.384 kb on - strand, within CCNA_00696 at 756.432 kb on + strand, within CCNA_00696 at 756.451 kb on + strand, within CCNA_00696 at 756.456 kb on + strand, within CCNA_00696 at 756.471 kb on + strand, within CCNA_00696 at 756.471 kb on + strand, within CCNA_00696 at 756.491 kb on + strand, within CCNA_00696 at 756.505 kb on - strand, within CCNA_00696 at 756.519 kb on - strand, within CCNA_00696 at 756.522 kb on + strand, within CCNA_00696 at 756.524 kb on - strand, within CCNA_00696 at 756.541 kb on + strand, within CCNA_00696 at 756.541 kb on + strand, within CCNA_00696 at 756.541 kb on + strand, within CCNA_00696 at 756.547 kb on + strand, within CCNA_00696 at 756.551 kb on + strand, within CCNA_00696 at 756.571 kb on - strand, within CCNA_00696 at 756.652 kb on - strand, within CCNA_00696 at 756.671 kb on + strand, within CCNA_00696 at 756.700 kb on + strand, within CCNA_00696 at 756.708 kb on - strand, within CCNA_00696 at 756.728 kb on - strand, within CCNA_00696 at 756.741 kb on + strand, within CCNA_00696 at 756.741 kb on + strand, within CCNA_00696 at 756.741 kb on + strand, within CCNA_00696 at 756.741 kb on + strand, within CCNA_00696 at 756.749 kb on - strand at 756.749 kb on - strand at 756.749 kb on - strand at 756.766 kb on + strand at 756.770 kb on - strand at 756.774 kb on - strand at 756.806 kb on + strand at 756.813 kb on + strand at 756.813 kb on + strand at 756.821 kb on - strand at 756.821 kb on - strand at 756.828 kb on - strand at 756.828 kb on - strand at 756.833 kb on + strand at 756.841 kb on - strand at 756.872 kb on - strand at 756.872 kb on - strand at 756.872 kb on - strand at 756.872 kb on - strand at 756.872 kb on - strand at 756.874 kb on - strand at 757.023 kb on + strand at 757.023 kb on + strand at 757.025 kb on + strand at 757.052 kb on + strand at 757.052 kb on + strand at 757.060 kb on - strand at 757.071 kb on - strand at 757.091 kb on + strand at 757.092 kb on - strand at 757.148 kb on - strand at 757.376 kb on + strand, within CCNA_00698 at 757.376 kb on + strand, within CCNA_00698 at 757.376 kb on + strand, within CCNA_00698 at 757.376 kb on + strand, within CCNA_00698 at 757.384 kb on - strand, within CCNA_00698 at 757.403 kb on + strand, within CCNA_00698 at 757.437 kb on - strand, within CCNA_00698 at 757.442 kb on + strand, within CCNA_00698 at 757.449 kb on + strand, within CCNA_00698 at 757.467 kb on - strand, within CCNA_00698 at 757.467 kb on - strand, within CCNA_00698 at 757.476 kb on + strand, within CCNA_00698 at 757.515 kb on - strand, within CCNA_00698 at 757.516 kb on + strand, within CCNA_00698 at 757.524 kb on - strand, within CCNA_00698 at 757.527 kb on + strand, within CCNA_00698 at 757.552 kb on - strand, within CCNA_00698 at 757.566 kb on - strand, within CCNA_00698 at 757.571 kb on + strand, within CCNA_00698 at 757.571 kb on + strand, within CCNA_00698 at 757.579 kb on - strand, within CCNA_00698 at 757.587 kb on - strand, within CCNA_00698 at 757.596 kb on + strand, within CCNA_00698 at 757.596 kb on + strand, within CCNA_00698 at 757.626 kb on + strand, within CCNA_00698 at 757.645 kb on + strand, within CCNA_00698 at 757.653 kb on - strand at 757.663 kb on + strand, within CCNA_00698 at 757.724 kb on + strand, within CCNA_00698 at 757.732 kb on - strand, within CCNA_00698 at 757.736 kb on + strand, within CCNA_00698 at 757.746 kb on + strand, within CCNA_00698 at 757.754 kb on - strand at 757.780 kb on + strand at 757.780 kb on + strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.826 kb on + strand at 757.830 kb on - strand at 757.838 kb on + strand at 757.838 kb on + strand at 757.838 kb on + strand at 757.838 kb on + strand at 757.838 kb on + strand at 757.838 kb on + strand at 757.846 kb on - strand at 757.846 kb on - strand at 757.846 kb on - strand at 757.866 kb on + strand at 757.875 kb on - strand at 757.885 kb on - strand at 757.889 kb on - strand at 757.923 kb on + strand at 757.932 kb on - strand at 757.932 kb on - strand at 757.937 kb on - strand at 757.939 kb on + strand at 757.947 kb on - strand at 758.341 kb on + strand, within CCNA_00699 at 758.341 kb on + strand, within CCNA_00699 at 758.353 kb on + strand at 758.353 kb on + strand at 758.375 kb on + strand at 758.525 kb on + strand at 758.541 kb on - strand at 758.541 kb on - strand at 758.567 kb on - strand at 758.601 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Nalidixic 0.06 mg/ml remove 756,318 + CCNA_00696 0.15 +0.9 756,323 - CCNA_00696 0.16 +0.5 756,326 - CCNA_00696 0.17 -0.8 756,329 + CCNA_00696 0.17 -1.6 756,337 - CCNA_00696 0.19 +1.1 756,344 + CCNA_00696 0.20 +2.3 756,363 + CCNA_00696 0.23 +3.4 756,371 + CCNA_00696 0.25 +0.7 756,371 - CCNA_00696 0.25 +1.3 756,376 + CCNA_00696 0.26 -2.2 756,384 - CCNA_00696 0.27 -1.3 756,432 + CCNA_00696 0.35 -0.4 756,451 + CCNA_00696 0.39 +0.1 756,456 + CCNA_00696 0.39 +1.7 756,471 + CCNA_00696 0.42 -1.2 756,471 + CCNA_00696 0.42 -2.8 756,491 + CCNA_00696 0.45 -1.7 756,505 - CCNA_00696 0.48 +0.4 756,519 - CCNA_00696 0.50 +3.2 756,522 + CCNA_00696 0.51 -3.5 756,524 - CCNA_00696 0.51 +0.9 756,541 + CCNA_00696 0.54 +0.9 756,541 + CCNA_00696 0.54 -1.7 756,541 + CCNA_00696 0.54 -2.2 756,547 + CCNA_00696 0.55 +0.4 756,551 + CCNA_00696 0.56 -0.3 756,571 - CCNA_00696 0.59 +1.1 756,652 - CCNA_00696 0.73 -2.0 756,671 + CCNA_00696 0.77 +0.5 756,700 + CCNA_00696 0.82 -1.7 756,708 - CCNA_00696 0.83 -0.4 756,728 - CCNA_00696 0.87 +0.5 756,741 + CCNA_00696 0.89 +0.5 756,741 + CCNA_00696 0.89 -2.6 756,741 + CCNA_00696 0.89 -1.7 756,741 + CCNA_00696 0.89 +0.7 756,749 - -1.1 756,749 - -0.5 756,749 - -0.1 756,766 + +0.8 756,770 - -0.6 756,774 - -0.1 756,806 + -1.7 756,813 + +0.9 756,813 + +0.4 756,821 - -2.0 756,821 - +1.2 756,828 - -1.6 756,828 - +1.4 756,833 + -1.4 756,841 - -0.2 756,872 - +2.7 756,872 - -0.0 756,872 - +0.9 756,872 - +4.0 756,872 - +2.8 756,874 - -0.5 757,023 + -3.0 757,023 + -0.8 757,025 + -0.7 757,052 + +0.1 757,052 + -0.3 757,060 - -1.3 757,071 - -0.2 757,091 + -0.7 757,092 - -0.8 757,148 - +1.0 757,376 + CCNA_00698 0.12 -1.1 757,376 + CCNA_00698 0.12 +0.3 757,376 + CCNA_00698 0.12 -1.3 757,376 + CCNA_00698 0.12 -0.6 757,384 - CCNA_00698 0.13 -2.2 757,403 + CCNA_00698 0.17 -1.5 757,437 - CCNA_00698 0.24 +0.7 757,442 + CCNA_00698 0.25 -1.5 757,449 + CCNA_00698 0.26 -2.5 757,467 - CCNA_00698 0.30 -1.4 757,467 - CCNA_00698 0.30 -3.2 757,476 + CCNA_00698 0.32 -0.4 757,515 - CCNA_00698 0.40 -1.5 757,516 + CCNA_00698 0.40 +0.6 757,524 - CCNA_00698 0.41 -1.8 757,527 + CCNA_00698 0.42 -2.2 757,552 - CCNA_00698 0.47 -0.1 757,566 - CCNA_00698 0.50 -0.1 757,571 + CCNA_00698 0.51 +0.9 757,571 + CCNA_00698 0.51 -0.1 757,579 - CCNA_00698 0.52 +0.2 757,587 - CCNA_00698 0.54 -0.6 757,596 + CCNA_00698 0.56 -0.0 757,596 + CCNA_00698 0.56 -1.7 757,626 + CCNA_00698 0.62 +0.2 757,645 + CCNA_00698 0.66 -1.8 757,653 - +1.7 757,663 + CCNA_00698 0.69 -2.1 757,724 + CCNA_00698 0.82 -1.6 757,732 - CCNA_00698 0.83 -1.5 757,736 + CCNA_00698 0.84 -0.7 757,746 + CCNA_00698 0.86 +1.7 757,754 - +0.9 757,780 + -1.2 757,780 + -0.5 757,788 - -0.8 757,788 - -1.6 757,788 - +0.2 757,788 - -1.2 757,788 - -1.6 757,788 - -1.6 757,788 - -0.4 757,788 - +0.1 757,788 - +0.4 757,826 + -1.3 757,830 - -0.8 757,838 + -0.7 757,838 + -0.7 757,838 + +0.4 757,838 + +0.9 757,838 + -2.1 757,838 + +0.5 757,846 - +1.4 757,846 - -2.3 757,846 - -2.4 757,866 + -0.7 757,875 - -1.7 757,885 - -0.6 757,889 - -0.1 757,923 + -0.2 757,932 - -1.0 757,932 - -1.7 757,937 - -0.0 757,939 + -0.4 757,947 - +2.7 758,341 + CCNA_00699 0.87 +2.2 758,341 + CCNA_00699 0.87 +2.8 758,353 + +2.1 758,353 + +3.1 758,375 + +3.7 758,525 + -0.9 758,541 - -0.7 758,541 - -0.2 758,567 - +0.9 758,601 - +0.6
Or see this region's nucleotide sequence