Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00535

Experiment: PYE with Nalidixic 0.06 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00534 and CCNA_00535 are separated by 42 nucleotidesCCNA_00535 and CCNA_00536 are separated by 293 nucleotides CCNA_00534: CCNA_00534 - hypothetical protein, at 546,314 to 547,336 _00534 CCNA_00535: CCNA_00535 - hypothetical protein, at 547,379 to 547,537 _00535 CCNA_00536: CCNA_00536 - DNA-directed RNA polymerase beta chain, at 547,831 to 551,901 _00536 Position (kb) 547 548Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 546.398 kb on - strandat 546.403 kb on - strandat 546.433 kb on + strand, within CCNA_00534at 546.460 kb on + strand, within CCNA_00534at 546.460 kb on + strand, within CCNA_00534at 546.470 kb on + strand, within CCNA_00534at 546.499 kb on + strand, within CCNA_00534at 546.499 kb on + strand, within CCNA_00534at 546.545 kb on - strand, within CCNA_00534at 546.555 kb on + strand, within CCNA_00534at 546.582 kb on + strand, within CCNA_00534at 546.625 kb on + strand, within CCNA_00534at 546.625 kb on + strand, within CCNA_00534at 546.631 kb on - strand, within CCNA_00534at 546.633 kb on - strand, within CCNA_00534at 546.644 kb on - strand, within CCNA_00534at 546.647 kb on + strand, within CCNA_00534at 546.655 kb on - strand, within CCNA_00534at 546.660 kb on - strand, within CCNA_00534at 546.709 kb on - strand, within CCNA_00534at 546.735 kb on + strand, within CCNA_00534at 546.735 kb on - strand, within CCNA_00534at 546.743 kb on - strand, within CCNA_00534at 546.744 kb on - strand, within CCNA_00534at 546.765 kb on + strand, within CCNA_00534at 546.769 kb on + strand, within CCNA_00534at 546.769 kb on + strand, within CCNA_00534at 546.769 kb on + strand, within CCNA_00534at 546.772 kb on + strand, within CCNA_00534at 546.777 kb on - strand, within CCNA_00534at 546.904 kb on + strand, within CCNA_00534at 546.928 kb on - strand, within CCNA_00534at 546.931 kb on + strand, within CCNA_00534at 546.931 kb on + strand, within CCNA_00534at 546.935 kb on + strand, within CCNA_00534at 546.939 kb on - strand, within CCNA_00534at 546.939 kb on - strand, within CCNA_00534at 546.939 kb on - strand, within CCNA_00534at 546.950 kb on + strand, within CCNA_00534at 547.055 kb on + strand, within CCNA_00534at 547.066 kb on - strand, within CCNA_00534at 547.082 kb on + strand, within CCNA_00534at 547.082 kb on + strand, within CCNA_00534at 547.084 kb on + strand, within CCNA_00534at 547.090 kb on - strand, within CCNA_00534at 547.096 kb on - strand, within CCNA_00534at 547.151 kb on - strand, within CCNA_00534at 547.181 kb on + strand, within CCNA_00534at 547.181 kb on + strand, within CCNA_00534at 547.216 kb on - strand, within CCNA_00534at 547.240 kb on + strandat 547.240 kb on + strandat 547.240 kb on + strandat 547.261 kb on - strandat 547.261 kb on - strandat 547.263 kb on + strandat 547.263 kb on + strandat 547.263 kb on - strandat 547.268 kb on + strandat 547.268 kb on + strandat 547.276 kb on - strandat 547.283 kb on - strandat 547.289 kb on + strandat 547.302 kb on - strandat 547.322 kb on + strandat 547.330 kb on - strandat 547.330 kb on - strandat 547.332 kb on + strandat 547.339 kb on - strandat 547.340 kb on - strandat 547.344 kb on + strandat 547.387 kb on + strandat 547.388 kb on - strandat 547.419 kb on - strand, within CCNA_00535at 547.500 kb on + strand, within CCNA_00535at 547.503 kb on + strand, within CCNA_00535at 547.615 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Nalidixic 0.06 mg/ml
remove
546,398 - -0.5
546,403 - +2.1
546,433 + CCNA_00534 0.12 -0.0
546,460 + CCNA_00534 0.14 +2.2
546,460 + CCNA_00534 0.14 +0.9
546,470 + CCNA_00534 0.15 -0.0
546,499 + CCNA_00534 0.18 +0.2
546,499 + CCNA_00534 0.18 +3.1
546,545 - CCNA_00534 0.23 +0.3
546,555 + CCNA_00534 0.24 +1.4
546,582 + CCNA_00534 0.26 -2.6
546,625 + CCNA_00534 0.30 -0.9
546,625 + CCNA_00534 0.30 -0.7
546,631 - CCNA_00534 0.31 -0.1
546,633 - CCNA_00534 0.31 -0.4
546,644 - CCNA_00534 0.32 +1.4
546,647 + CCNA_00534 0.33 +1.3
546,655 - CCNA_00534 0.33 -2.1
546,660 - CCNA_00534 0.34 -0.4
546,709 - CCNA_00534 0.39 -0.7
546,735 + CCNA_00534 0.41 +2.3
546,735 - CCNA_00534 0.41 +1.4
546,743 - CCNA_00534 0.42 +1.0
546,744 - CCNA_00534 0.42 -0.9
546,765 + CCNA_00534 0.44 -1.8
546,769 + CCNA_00534 0.44 -1.9
546,769 + CCNA_00534 0.44 -1.7
546,769 + CCNA_00534 0.44 -0.2
546,772 + CCNA_00534 0.45 -1.9
546,777 - CCNA_00534 0.45 -0.9
546,904 + CCNA_00534 0.58 -0.5
546,928 - CCNA_00534 0.60 +1.6
546,931 + CCNA_00534 0.60 -0.7
546,931 + CCNA_00534 0.60 -1.2
546,935 + CCNA_00534 0.61 +0.8
546,939 - CCNA_00534 0.61 +0.7
546,939 - CCNA_00534 0.61 -0.1
546,939 - CCNA_00534 0.61 -0.3
546,950 + CCNA_00534 0.62 +1.2
547,055 + CCNA_00534 0.72 -2.8
547,066 - CCNA_00534 0.74 -2.5
547,082 + CCNA_00534 0.75 +0.3
547,082 + CCNA_00534 0.75 +0.6
547,084 + CCNA_00534 0.75 +0.8
547,090 - CCNA_00534 0.76 -0.4
547,096 - CCNA_00534 0.76 +0.8
547,151 - CCNA_00534 0.82 +0.4
547,181 + CCNA_00534 0.85 +0.9
547,181 + CCNA_00534 0.85 -1.0
547,216 - CCNA_00534 0.88 +0.4
547,240 + +0.6
547,240 + -0.0
547,240 + +1.8
547,261 - -0.8
547,261 - +0.6
547,263 + -0.5
547,263 + -0.7
547,263 - +0.8
547,268 + -1.9
547,268 + -0.6
547,276 - -2.0
547,283 - +0.0
547,289 + -1.0
547,302 - -0.4
547,322 + -3.3
547,330 - -0.1
547,330 - -0.3
547,332 + +0.3
547,339 - +1.0
547,340 - +1.0
547,344 + +0.4
547,387 + +0.2
547,388 - -0.3
547,419 - CCNA_00535 0.25 +0.1
547,500 + CCNA_00535 0.76 -2.0
547,503 + CCNA_00535 0.78 -1.0
547,615 + +1.4

Or see this region's nucleotide sequence