Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00064

Experiment: PYE with Nalidixic 0.06 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00063 and CCNA_00064 are separated by 239 nucleotidesCCNA_00064 and CCNA_03914 are separated by 51 nucleotidesCCNA_03914 and CCNA_00065 are separated by 92 nucleotidesCCNA_00065 and CCNA_00066 are separated by 57 nucleotides CCNA_00063: CCNA_00063 - MviN-family integral membrane protein, at 64,529 to 66,091 _00063 CCNA_00064: CCNA_00064 - methyl-accepting chemotaxis protein, at 66,331 to 68,127 _00064 CCNA_03914: CCNA_03914 - hypothetical protein, at 68,179 to 68,196 _03914 CCNA_00065: CCNA_00065 - S-adenosylmethionine-dependent methyltransferase, at 68,289 to 69,062 _00065 CCNA_00066: CCNA_00066 - Rieske (2Fe-2S) domain protein, at 69,120 to 69,488 _00066 Position (kb) 66 67 68 69Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 66.145 kb on + strandat 66.153 kb on - strandat 66.154 kb on + strandat 66.180 kb on + strandat 66.180 kb on + strandat 66.181 kb on + strandat 66.188 kb on - strandat 66.188 kb on - strandat 66.188 kb on - strandat 66.223 kb on + strandat 66.289 kb on + strandat 66.297 kb on + strandat 66.374 kb on + strandat 66.379 kb on + strandat 66.382 kb on - strandat 66.387 kb on - strandat 66.411 kb on + strandat 66.411 kb on + strandat 66.459 kb on + strandat 66.459 kb on + strandat 66.459 kb on + strandat 66.459 kb on + strandat 66.459 kb on + strandat 66.459 kb on - strandat 66.462 kb on - strandat 66.495 kb on + strandat 66.496 kb on - strandat 66.506 kb on - strandat 66.599 kb on + strandat 66.612 kb on + strand, within CCNA_00064at 66.621 kb on - strand, within CCNA_00064at 66.624 kb on + strand, within CCNA_00064at 66.657 kb on - strand, within CCNA_00064at 66.657 kb on - strand, within CCNA_00064at 66.657 kb on - strand, within CCNA_00064at 66.666 kb on + strand, within CCNA_00064at 66.674 kb on - strand, within CCNA_00064at 66.690 kb on + strand, within CCNA_00064at 66.697 kb on + strand, within CCNA_00064at 66.698 kb on - strand, within CCNA_00064at 66.713 kb on - strand, within CCNA_00064at 66.720 kb on + strand, within CCNA_00064at 66.720 kb on + strand, within CCNA_00064at 66.720 kb on + strand, within CCNA_00064at 66.728 kb on - strand, within CCNA_00064at 66.774 kb on + strand, within CCNA_00064at 66.782 kb on - strand, within CCNA_00064at 66.783 kb on + strand, within CCNA_00064at 66.802 kb on + strand, within CCNA_00064at 66.820 kb on + strand, within CCNA_00064at 66.852 kb on - strand, within CCNA_00064at 66.881 kb on - strand, within CCNA_00064at 66.916 kb on - strand, within CCNA_00064at 66.917 kb on + strand, within CCNA_00064at 66.919 kb on + strand, within CCNA_00064at 66.919 kb on + strand, within CCNA_00064at 66.919 kb on + strand, within CCNA_00064at 66.919 kb on + strand, within CCNA_00064at 66.919 kb on + strand, within CCNA_00064at 66.919 kb on + strand, within CCNA_00064at 66.927 kb on - strand, within CCNA_00064at 66.927 kb on - strand, within CCNA_00064at 66.927 kb on - strand, within CCNA_00064at 66.929 kb on - strand, within CCNA_00064at 66.998 kb on + strand, within CCNA_00064at 67.002 kb on + strand, within CCNA_00064at 67.009 kb on - strand, within CCNA_00064at 67.103 kb on - strand, within CCNA_00064at 67.118 kb on + strand, within CCNA_00064at 67.125 kb on + strand, within CCNA_00064at 67.149 kb on - strand, within CCNA_00064at 67.149 kb on - strand, within CCNA_00064at 67.149 kb on - strand, within CCNA_00064at 67.149 kb on - strand, within CCNA_00064at 67.198 kb on + strand, within CCNA_00064at 67.206 kb on - strandat 67.206 kb on - strand, within CCNA_00064at 67.207 kb on + strand, within CCNA_00064at 67.208 kb on + strand, within CCNA_00064at 67.241 kb on - strand, within CCNA_00064at 67.255 kb on + strand, within CCNA_00064at 67.265 kb on + strand, within CCNA_00064at 67.273 kb on - strand, within CCNA_00064at 67.273 kb on - strand, within CCNA_00064at 67.287 kb on + strand, within CCNA_00064at 67.290 kb on - strand, within CCNA_00064at 67.295 kb on - strand, within CCNA_00064at 67.344 kb on + strand, within CCNA_00064at 67.354 kb on + strand, within CCNA_00064at 67.362 kb on - strandat 67.368 kb on + strand, within CCNA_00064at 67.391 kb on - strand, within CCNA_00064at 67.401 kb on - strand, within CCNA_00064at 67.403 kb on + strand, within CCNA_00064at 67.424 kb on - strand, within CCNA_00064at 67.508 kb on - strand, within CCNA_00064at 67.527 kb on - strand, within CCNA_00064at 67.527 kb on - strand, within CCNA_00064at 67.527 kb on - strand, within CCNA_00064at 67.532 kb on - strand, within CCNA_00064at 67.551 kb on + strand, within CCNA_00064at 67.576 kb on + strand, within CCNA_00064at 67.601 kb on - strand, within CCNA_00064at 67.602 kb on + strand, within CCNA_00064at 67.610 kb on - strand, within CCNA_00064at 67.610 kb on - strand, within CCNA_00064at 67.646 kb on + strand, within CCNA_00064at 67.660 kb on - strand, within CCNA_00064at 67.660 kb on - strand, within CCNA_00064at 67.675 kb on + strand, within CCNA_00064at 67.688 kb on - strand, within CCNA_00064at 67.695 kb on + strand, within CCNA_00064at 67.741 kb on + strand, within CCNA_00064at 67.749 kb on - strand, within CCNA_00064at 67.749 kb on - strand, within CCNA_00064at 67.778 kb on - strand, within CCNA_00064at 67.804 kb on - strand, within CCNA_00064at 67.836 kb on - strand, within CCNA_00064at 67.836 kb on - strand, within CCNA_00064at 67.837 kb on - strand, within CCNA_00064at 67.853 kb on + strand, within CCNA_00064at 67.860 kb on - strand, within CCNA_00064at 67.860 kb on - strand, within CCNA_00064at 67.861 kb on - strand, within CCNA_00064at 67.875 kb on - strand, within CCNA_00064at 67.886 kb on + strand, within CCNA_00064at 67.886 kb on + strand, within CCNA_00064at 67.886 kb on + strand, within CCNA_00064at 67.886 kb on + strand, within CCNA_00064at 67.886 kb on + strand, within CCNA_00064at 67.886 kb on + strand, within CCNA_00064at 67.891 kb on + strand, within CCNA_00064at 67.894 kb on - strand, within CCNA_00064at 67.895 kb on - strand, within CCNA_00064at 67.906 kb on - strand, within CCNA_00064at 67.918 kb on + strand, within CCNA_00064at 67.930 kb on + strand, within CCNA_00064at 68.041 kb on - strandat 68.044 kb on + strandat 68.067 kb on - strandat 68.067 kb on - strandat 68.074 kb on + strandat 68.074 kb on + strandat 68.077 kb on - strandat 68.107 kb on + strandat 68.123 kb on + strandat 68.358 kb on + strandat 68.368 kb on + strand, within CCNA_00065at 68.376 kb on - strand, within CCNA_00065at 68.383 kb on + strand, within CCNA_00065at 68.398 kb on - strand, within CCNA_00065at 68.422 kb on - strand, within CCNA_00065at 68.466 kb on - strand, within CCNA_00065at 68.471 kb on - strand, within CCNA_00065at 68.476 kb on - strand, within CCNA_00065at 68.488 kb on - strand, within CCNA_00065at 68.507 kb on + strand, within CCNA_00065at 68.517 kb on - strand, within CCNA_00065at 68.524 kb on + strand, within CCNA_00065at 68.524 kb on + strand, within CCNA_00065at 68.524 kb on + strand, within CCNA_00065at 68.532 kb on - strand, within CCNA_00065at 68.532 kb on - strand, within CCNA_00065at 68.532 kb on - strand, within CCNA_00065at 68.537 kb on - strand, within CCNA_00065at 68.595 kb on + strand, within CCNA_00065at 68.596 kb on + strand, within CCNA_00065at 68.759 kb on + strand, within CCNA_00065at 68.764 kb on - strand, within CCNA_00065at 68.885 kb on - strand, within CCNA_00065at 68.885 kb on - strand, within CCNA_00065at 68.911 kb on + strand, within CCNA_00065at 68.911 kb on + strand, within CCNA_00065at 68.918 kb on - strand, within CCNA_00065at 68.945 kb on + strand, within CCNA_00065at 68.945 kb on + strand, within CCNA_00065at 68.948 kb on - strand, within CCNA_00065at 68.950 kb on + strand, within CCNA_00065at 68.950 kb on + strand, within CCNA_00065at 68.958 kb on - strand, within CCNA_00065at 68.958 kb on - strand, within CCNA_00065at 68.958 kb on - strand, within CCNA_00065at 68.958 kb on - strand, within CCNA_00065at 68.983 kb on + strand, within CCNA_00065at 68.991 kb on - strandat 68.991 kb on - strandat 68.991 kb on - strandat 69.001 kb on + strandat 69.002 kb on + strandat 69.010 kb on - strandat 69.023 kb on + strandat 69.045 kb on - strandat 69.045 kb on - strandat 69.047 kb on + strandat 69.093 kb on + strandat 69.114 kb on - strandat 69.117 kb on + strandat 69.118 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Nalidixic 0.06 mg/ml
remove
66,145 + -0.7
66,153 - -0.1
66,154 + -1.5
66,180 + -1.1
66,180 + -0.9
66,181 + +0.0
66,188 - -2.4
66,188 - -1.3
66,188 - -1.3
66,223 + +1.1
66,289 + +0.8
66,297 + -1.5
66,374 + -0.4
66,379 + -1.2
66,382 - -0.7
66,387 - -0.5
66,411 + -0.6
66,411 + -2.9
66,459 + +0.1
66,459 + -0.9
66,459 + -1.8
66,459 + +2.2
66,459 + -0.1
66,459 - +0.1
66,462 - -0.2
66,495 + +0.6
66,496 - +1.5
66,506 - +1.1
66,599 + +2.5
66,612 + CCNA_00064 0.16 +0.5
66,621 - CCNA_00064 0.16 -0.1
66,624 + CCNA_00064 0.16 -1.1
66,657 - CCNA_00064 0.18 +1.0
66,657 - CCNA_00064 0.18 -1.7
66,657 - CCNA_00064 0.18 -2.2
66,666 + CCNA_00064 0.19 +1.2
66,674 - CCNA_00064 0.19 -1.4
66,690 + CCNA_00064 0.20 +1.9
66,697 + CCNA_00064 0.20 -1.1
66,698 - CCNA_00064 0.20 -0.7
66,713 - CCNA_00064 0.21 -0.0
66,720 + CCNA_00064 0.22 -0.2
66,720 + CCNA_00064 0.22 -2.7
66,720 + CCNA_00064 0.22 -1.1
66,728 - CCNA_00064 0.22 -1.6
66,774 + CCNA_00064 0.25 +1.2
66,782 - CCNA_00064 0.25 +1.8
66,783 + CCNA_00064 0.25 +0.3
66,802 + CCNA_00064 0.26 +0.3
66,820 + CCNA_00064 0.27 -2.3
66,852 - CCNA_00064 0.29 -1.9
66,881 - CCNA_00064 0.31 +0.3
66,916 - CCNA_00064 0.33 +0.3
66,917 + CCNA_00064 0.33 -1.7
66,919 + CCNA_00064 0.33 +0.0
66,919 + CCNA_00064 0.33 +1.5
66,919 + CCNA_00064 0.33 +2.3
66,919 + CCNA_00064 0.33 +0.9
66,919 + CCNA_00064 0.33 -2.7
66,919 + CCNA_00064 0.33 -0.8
66,927 - CCNA_00064 0.33 +0.4
66,927 - CCNA_00064 0.33 +0.3
66,927 - CCNA_00064 0.33 -0.9
66,929 - CCNA_00064 0.33 -0.9
66,998 + CCNA_00064 0.37 -0.5
67,002 + CCNA_00064 0.37 +0.5
67,009 - CCNA_00064 0.38 +0.5
67,103 - CCNA_00064 0.43 +0.5
67,118 + CCNA_00064 0.44 +0.5
67,125 + CCNA_00064 0.44 +0.9
67,149 - CCNA_00064 0.46 -0.6
67,149 - CCNA_00064 0.46 +1.1
67,149 - CCNA_00064 0.46 -1.1
67,149 - CCNA_00064 0.46 +0.5
67,198 + CCNA_00064 0.48 +0.4
67,206 - +1.1
67,206 - CCNA_00064 0.49 +1.0
67,207 + CCNA_00064 0.49 -0.9
67,208 + CCNA_00064 0.49 +0.1
67,241 - CCNA_00064 0.51 -1.1
67,255 + CCNA_00064 0.51 -1.1
67,265 + CCNA_00064 0.52 +0.2
67,273 - CCNA_00064 0.52 -0.0
67,273 - CCNA_00064 0.52 +0.3
67,287 + CCNA_00064 0.53 -0.8
67,290 - CCNA_00064 0.53 +0.6
67,295 - CCNA_00064 0.54 +0.3
67,344 + CCNA_00064 0.56 -2.2
67,354 + CCNA_00064 0.57 +0.1
67,362 - +1.5
67,368 + CCNA_00064 0.58 +0.9
67,391 - CCNA_00064 0.59 -1.5
67,401 - CCNA_00064 0.60 -1.6
67,403 + CCNA_00064 0.60 +0.2
67,424 - CCNA_00064 0.61 -0.1
67,508 - CCNA_00064 0.65 +0.6
67,527 - CCNA_00064 0.67 -0.7
67,527 - CCNA_00064 0.67 -0.5
67,527 - CCNA_00064 0.67 -1.2
67,532 - CCNA_00064 0.67 -0.8
67,551 + CCNA_00064 0.68 +1.0
67,576 + CCNA_00064 0.69 -0.6
67,601 - CCNA_00064 0.71 +0.1
67,602 + CCNA_00064 0.71 +0.0
67,610 - CCNA_00064 0.71 -1.5
67,610 - CCNA_00064 0.71 +0.9
67,646 + CCNA_00064 0.73 -1.4
67,660 - CCNA_00064 0.74 +1.5
67,660 - CCNA_00064 0.74 +0.4
67,675 + CCNA_00064 0.75 +0.5
67,688 - CCNA_00064 0.76 +0.3
67,695 + CCNA_00064 0.76 +0.5
67,741 + CCNA_00064 0.78 -0.9
67,749 - CCNA_00064 0.79 -0.9
67,749 - CCNA_00064 0.79 -0.5
67,778 - CCNA_00064 0.81 -1.2
67,804 - CCNA_00064 0.82 +0.3
67,836 - CCNA_00064 0.84 +0.9
67,836 - CCNA_00064 0.84 +1.6
67,837 - CCNA_00064 0.84 +0.5
67,853 + CCNA_00064 0.85 -1.3
67,860 - CCNA_00064 0.85 -0.2
67,860 - CCNA_00064 0.85 -1.0
67,861 - CCNA_00064 0.85 -1.1
67,875 - CCNA_00064 0.86 -0.0
67,886 + CCNA_00064 0.87 +2.8
67,886 + CCNA_00064 0.87 -0.2
67,886 + CCNA_00064 0.87 +0.3
67,886 + CCNA_00064 0.87 +0.7
67,886 + CCNA_00064 0.87 -1.8
67,886 + CCNA_00064 0.87 -1.7
67,891 + CCNA_00064 0.87 -1.5
67,894 - CCNA_00064 0.87 +2.4
67,895 - CCNA_00064 0.87 -0.2
67,906 - CCNA_00064 0.88 -0.0
67,918 + CCNA_00064 0.88 +3.1
67,930 + CCNA_00064 0.89 -0.4
68,041 - -1.6
68,044 + +0.9
68,067 - +0.2
68,067 - +1.3
68,074 + -0.4
68,074 + -0.0
68,077 - -1.4
68,107 + +1.6
68,123 + -2.1
68,358 + -0.8
68,368 + CCNA_00065 0.10 +1.9
68,376 - CCNA_00065 0.11 -0.8
68,383 + CCNA_00065 0.12 -0.7
68,398 - CCNA_00065 0.14 -1.7
68,422 - CCNA_00065 0.17 -1.9
68,466 - CCNA_00065 0.23 +0.1
68,471 - CCNA_00065 0.24 +1.4
68,476 - CCNA_00065 0.24 -0.4
68,488 - CCNA_00065 0.26 +2.5
68,507 + CCNA_00065 0.28 -0.4
68,517 - CCNA_00065 0.29 -0.2
68,524 + CCNA_00065 0.30 +1.6
68,524 + CCNA_00065 0.30 +3.2
68,524 + CCNA_00065 0.30 +0.1
68,532 - CCNA_00065 0.31 +0.3
68,532 - CCNA_00065 0.31 -0.5
68,532 - CCNA_00065 0.31 -1.7
68,537 - CCNA_00065 0.32 -1.2
68,595 + CCNA_00065 0.40 +1.7
68,596 + CCNA_00065 0.40 +1.5
68,759 + CCNA_00065 0.61 +1.1
68,764 - CCNA_00065 0.61 -1.6
68,885 - CCNA_00065 0.77 -0.1
68,885 - CCNA_00065 0.77 -0.0
68,911 + CCNA_00065 0.80 +0.7
68,911 + CCNA_00065 0.80 -1.6
68,918 - CCNA_00065 0.81 -0.4
68,945 + CCNA_00065 0.85 -0.4
68,945 + CCNA_00065 0.85 -3.2
68,948 - CCNA_00065 0.85 +0.5
68,950 + CCNA_00065 0.85 +0.5
68,950 + CCNA_00065 0.85 +0.1
68,958 - CCNA_00065 0.86 -0.6
68,958 - CCNA_00065 0.86 +2.1
68,958 - CCNA_00065 0.86 -1.1
68,958 - CCNA_00065 0.86 +1.5
68,983 + CCNA_00065 0.90 +0.3
68,991 - -2.1
68,991 - -0.3
68,991 - -1.5
69,001 + +0.1
69,002 + -1.0
69,010 - -3.2
69,023 + -1.1
69,045 - -1.8
69,045 - +2.4
69,047 + -2.6
69,093 + +0.6
69,114 - +1.7
69,117 + -0.3
69,118 + -0.7

Or see this region's nucleotide sequence