Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS22170

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS22160 and CA265_RS22165 are separated by 131 nucleotidesCA265_RS22165 and CA265_RS22170 are separated by 345 nucleotidesCA265_RS22170 and CA265_RS22175 are separated by 11 nucleotides CA265_RS22160: CA265_RS22160 - hypothetical protein, at 5,446,429 to 5,446,824 _RS22160 CA265_RS22165: CA265_RS22165 - hypothetical protein, at 5,446,956 to 5,447,351 _RS22165 CA265_RS22170: CA265_RS22170 - type IV secretion protein Rhs, at 5,447,697 to 5,449,562 _RS22170 CA265_RS22175: CA265_RS22175 - hypothetical protein, at 5,449,574 to 5,452,258 _RS22175 Position (kb) 5447 5448 5449 5450Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5446.857 kb on - strandat 5446.857 kb on - strandat 5446.879 kb on + strandat 5446.879 kb on + strandat 5446.944 kb on - strandat 5446.944 kb on - strandat 5447.224 kb on - strand, within CA265_RS22165at 5447.236 kb on - strand, within CA265_RS22165at 5447.355 kb on + strandat 5447.365 kb on + strandat 5447.366 kb on - strandat 5447.366 kb on - strandat 5447.438 kb on - strandat 5447.457 kb on - strandat 5447.465 kb on + strandat 5447.466 kb on - strandat 5447.466 kb on - strandat 5447.477 kb on - strandat 5447.521 kb on - strandat 5447.726 kb on + strandat 5447.810 kb on + strandat 5447.987 kb on - strand, within CA265_RS22170at 5448.104 kb on - strand, within CA265_RS22170at 5448.144 kb on + strand, within CA265_RS22170at 5448.156 kb on + strand, within CA265_RS22170at 5448.228 kb on - strand, within CA265_RS22170at 5448.274 kb on + strand, within CA265_RS22170at 5448.307 kb on - strand, within CA265_RS22170at 5448.349 kb on - strand, within CA265_RS22170at 5448.349 kb on - strand, within CA265_RS22170at 5448.351 kb on - strand, within CA265_RS22170at 5448.405 kb on - strand, within CA265_RS22170at 5448.416 kb on - strand, within CA265_RS22170at 5448.494 kb on + strand, within CA265_RS22170at 5448.495 kb on - strand, within CA265_RS22170at 5448.573 kb on - strand, within CA265_RS22170at 5448.675 kb on - strand, within CA265_RS22170at 5448.730 kb on + strand, within CA265_RS22170at 5448.782 kb on + strand, within CA265_RS22170at 5448.783 kb on - strand, within CA265_RS22170at 5448.834 kb on - strand, within CA265_RS22170at 5448.848 kb on + strand, within CA265_RS22170at 5448.913 kb on + strand, within CA265_RS22170at 5449.026 kb on + strand, within CA265_RS22170at 5449.079 kb on + strand, within CA265_RS22170at 5449.080 kb on - strand, within CA265_RS22170at 5449.172 kb on + strand, within CA265_RS22170at 5449.190 kb on + strand, within CA265_RS22170at 5449.196 kb on + strand, within CA265_RS22170at 5449.196 kb on + strand, within CA265_RS22170at 5449.247 kb on + strand, within CA265_RS22170at 5449.262 kb on + strand, within CA265_RS22170at 5449.262 kb on + strand, within CA265_RS22170at 5449.263 kb on - strand, within CA265_RS22170at 5449.316 kb on + strand, within CA265_RS22170at 5449.359 kb on - strand, within CA265_RS22170at 5449.359 kb on - strand, within CA265_RS22170at 5449.383 kb on - strandat 5449.383 kb on - strandat 5449.536 kb on - strandat 5449.632 kb on + strandat 5449.704 kb on + strandat 5449.724 kb on - strandat 5449.724 kb on - strandat 5449.727 kb on - strandat 5449.727 kb on - strandat 5449.743 kb on + strandat 5449.753 kb on + strandat 5449.754 kb on - strandat 5449.754 kb on - strandat 5449.780 kb on - strandat 5449.795 kb on + strandat 5449.795 kb on + strandat 5449.811 kb on + strandat 5449.811 kb on + strandat 5449.811 kb on + strandat 5449.811 kb on + strandat 5449.881 kb on - strand, within CA265_RS22175at 5449.914 kb on - strand, within CA265_RS22175at 5449.923 kb on + strand, within CA265_RS22175at 5449.942 kb on + strand, within CA265_RS22175at 5449.974 kb on + strand, within CA265_RS22175at 5449.974 kb on + strand, within CA265_RS22175at 5449.975 kb on - strand, within CA265_RS22175at 5450.006 kb on + strand, within CA265_RS22175at 5450.008 kb on + strand, within CA265_RS22175at 5450.008 kb on + strand, within CA265_RS22175at 5450.008 kb on + strand, within CA265_RS22175at 5450.009 kb on - strand, within CA265_RS22175at 5450.009 kb on - strand, within CA265_RS22175at 5450.009 kb on - strand, within CA265_RS22175at 5450.014 kb on + strand, within CA265_RS22175at 5450.104 kb on - strand, within CA265_RS22175at 5450.112 kb on - strand, within CA265_RS22175at 5450.112 kb on - strand, within CA265_RS22175at 5450.112 kb on - strand, within CA265_RS22175at 5450.134 kb on - strand, within CA265_RS22175at 5450.176 kb on + strand, within CA265_RS22175at 5450.177 kb on - strand, within CA265_RS22175at 5450.226 kb on + strand, within CA265_RS22175at 5450.226 kb on + strand, within CA265_RS22175at 5450.227 kb on - strand, within CA265_RS22175at 5450.245 kb on + strand, within CA265_RS22175at 5450.245 kb on + strand, within CA265_RS22175at 5450.246 kb on - strand, within CA265_RS22175at 5450.246 kb on - strand, within CA265_RS22175at 5450.250 kb on - strand, within CA265_RS22175at 5450.321 kb on - strand, within CA265_RS22175at 5450.357 kb on - strand, within CA265_RS22175at 5450.373 kb on + strand, within CA265_RS22175at 5450.374 kb on - strand, within CA265_RS22175at 5450.461 kb on + strand, within CA265_RS22175at 5450.485 kb on - strand, within CA265_RS22175at 5450.549 kb on - strand, within CA265_RS22175

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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5,446,857 - +0.3
5,446,857 - +0.1
5,446,879 + -0.1
5,446,879 + +0.9
5,446,944 - -0.4
5,446,944 - -0.5
5,447,224 - CA265_RS22165 0.68 -1.8
5,447,236 - CA265_RS22165 0.71 -0.9
5,447,355 + -2.1
5,447,365 + -0.5
5,447,366 - -1.6
5,447,366 - -0.2
5,447,438 - +0.0
5,447,457 - -1.1
5,447,465 + +0.2
5,447,466 - +0.8
5,447,466 - -0.6
5,447,477 - +0.1
5,447,521 - -0.3
5,447,726 + +1.5
5,447,810 + +0.9
5,447,987 - CA265_RS22170 0.16 -1.4
5,448,104 - CA265_RS22170 0.22 -0.4
5,448,144 + CA265_RS22170 0.24 -1.0
5,448,156 + CA265_RS22170 0.25 -0.1
5,448,228 - CA265_RS22170 0.28 +0.1
5,448,274 + CA265_RS22170 0.31 +1.3
5,448,307 - CA265_RS22170 0.33 -1.3
5,448,349 - CA265_RS22170 0.35 +0.1
5,448,349 - CA265_RS22170 0.35 +0.4
5,448,351 - CA265_RS22170 0.35 -1.3
5,448,405 - CA265_RS22170 0.38 +0.6
5,448,416 - CA265_RS22170 0.39 -1.0
5,448,494 + CA265_RS22170 0.43 +0.4
5,448,495 - CA265_RS22170 0.43 -2.0
5,448,573 - CA265_RS22170 0.47 +0.9
5,448,675 - CA265_RS22170 0.52 +0.3
5,448,730 + CA265_RS22170 0.55 -2.5
5,448,782 + CA265_RS22170 0.58 +1.0
5,448,783 - CA265_RS22170 0.58 +0.2
5,448,834 - CA265_RS22170 0.61 +0.9
5,448,848 + CA265_RS22170 0.62 -0.1
5,448,913 + CA265_RS22170 0.65 +0.6
5,449,026 + CA265_RS22170 0.71 -1.4
5,449,079 + CA265_RS22170 0.74 -0.1
5,449,080 - CA265_RS22170 0.74 +1.2
5,449,172 + CA265_RS22170 0.79 +0.5
5,449,190 + CA265_RS22170 0.80 +0.5
5,449,196 + CA265_RS22170 0.80 -0.8
5,449,196 + CA265_RS22170 0.80 -1.0
5,449,247 + CA265_RS22170 0.83 +1.5
5,449,262 + CA265_RS22170 0.84 +0.7
5,449,262 + CA265_RS22170 0.84 -0.3
5,449,263 - CA265_RS22170 0.84 -0.8
5,449,316 + CA265_RS22170 0.87 +0.5
5,449,359 - CA265_RS22170 0.89 -0.1
5,449,359 - CA265_RS22170 0.89 +0.8
5,449,383 - +0.5
5,449,383 - -0.1
5,449,536 - +0.9
5,449,632 + +1.4
5,449,704 + -0.2
5,449,724 - -0.9
5,449,724 - +1.2
5,449,727 - -0.5
5,449,727 - +0.9
5,449,743 + -0.2
5,449,753 + -0.0
5,449,754 - -0.0
5,449,754 - -0.7
5,449,780 - +0.8
5,449,795 + +0.2
5,449,795 + -0.6
5,449,811 + -0.1
5,449,811 + -0.8
5,449,811 + +1.2
5,449,811 + -0.0
5,449,881 - CA265_RS22175 0.11 +1.5
5,449,914 - CA265_RS22175 0.13 -0.5
5,449,923 + CA265_RS22175 0.13 -1.6
5,449,942 + CA265_RS22175 0.14 -0.1
5,449,974 + CA265_RS22175 0.15 -0.6
5,449,974 + CA265_RS22175 0.15 -0.8
5,449,975 - CA265_RS22175 0.15 -1.1
5,450,006 + CA265_RS22175 0.16 -0.1
5,450,008 + CA265_RS22175 0.16 +2.1
5,450,008 + CA265_RS22175 0.16 -2.4
5,450,008 + CA265_RS22175 0.16 -0.4
5,450,009 - CA265_RS22175 0.16 -0.6
5,450,009 - CA265_RS22175 0.16 +1.1
5,450,009 - CA265_RS22175 0.16 +0.4
5,450,014 + CA265_RS22175 0.16 +0.5
5,450,104 - CA265_RS22175 0.20 +0.3
5,450,112 - CA265_RS22175 0.20 -2.3
5,450,112 - CA265_RS22175 0.20 +0.5
5,450,112 - CA265_RS22175 0.20 -3.1
5,450,134 - CA265_RS22175 0.21 -0.6
5,450,176 + CA265_RS22175 0.22 +0.1
5,450,177 - CA265_RS22175 0.22 -1.9
5,450,226 + CA265_RS22175 0.24 -0.4
5,450,226 + CA265_RS22175 0.24 +1.2
5,450,227 - CA265_RS22175 0.24 +0.2
5,450,245 + CA265_RS22175 0.25 +0.6
5,450,245 + CA265_RS22175 0.25 +0.7
5,450,246 - CA265_RS22175 0.25 -0.5
5,450,246 - CA265_RS22175 0.25 +0.0
5,450,250 - CA265_RS22175 0.25 +0.9
5,450,321 - CA265_RS22175 0.28 +1.2
5,450,357 - CA265_RS22175 0.29 +0.3
5,450,373 + CA265_RS22175 0.30 +0.0
5,450,374 - CA265_RS22175 0.30 -0.1
5,450,461 + CA265_RS22175 0.33 -0.7
5,450,485 - CA265_RS22175 0.34 -0.4
5,450,549 - CA265_RS22175 0.36 -0.0

Or see this region's nucleotide sequence