Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS22150 and CA265_RS22155 are separated by 123 nucleotides CA265_RS22155 and CA265_RS22160 are separated by 314 nucleotides CA265_RS22160 and CA265_RS22165 are separated by 131 nucleotides
CA265_RS22150: CA265_RS22150 - type VI secretion system contractile sheath protein TssC, at 5,444,030 to 5,445,418
_RS22150
CA265_RS22155: CA265_RS22155 - hypothetical protein, at 5,445,542 to 5,446,114
_RS22155
CA265_RS22160: CA265_RS22160 - hypothetical protein, at 5,446,429 to 5,446,824
_RS22160
CA265_RS22165: CA265_RS22165 - hypothetical protein, at 5,446,956 to 5,447,351
_RS22165
Position (kb) 5445
5446
5447 Strain fitness (log2 ratio) -2
-1
0
1 at 5444.550 kb on + strand, within CA265_RS22150 at 5444.550 kb on + strand, within CA265_RS22150 at 5444.551 kb on - strand, within CA265_RS22150 at 5444.551 kb on - strand, within CA265_RS22150 at 5444.583 kb on + strand, within CA265_RS22150 at 5444.671 kb on + strand, within CA265_RS22150 at 5444.672 kb on - strand, within CA265_RS22150 at 5444.785 kb on - strand, within CA265_RS22150 at 5444.788 kb on + strand, within CA265_RS22150 at 5444.789 kb on - strand, within CA265_RS22150 at 5444.789 kb on - strand, within CA265_RS22150 at 5444.809 kb on - strand, within CA265_RS22150 at 5444.889 kb on - strand at 5444.892 kb on - strand, within CA265_RS22150 at 5445.076 kb on + strand, within CA265_RS22150 at 5445.077 kb on - strand, within CA265_RS22150 at 5445.085 kb on - strand, within CA265_RS22150 at 5445.116 kb on + strand, within CA265_RS22150 at 5445.118 kb on + strand, within CA265_RS22150 at 5445.119 kb on - strand, within CA265_RS22150 at 5445.208 kb on + strand, within CA265_RS22150 at 5445.386 kb on - strand at 5445.398 kb on - strand at 5445.398 kb on - strand at 5445.404 kb on + strand at 5445.450 kb on + strand at 5445.451 kb on - strand at 5445.479 kb on + strand at 5445.486 kb on + strand at 5445.552 kb on + strand at 5445.552 kb on + strand at 5445.553 kb on - strand at 5445.718 kb on - strand, within CA265_RS22155 at 5445.718 kb on - strand, within CA265_RS22155 at 5445.718 kb on - strand, within CA265_RS22155 at 5445.793 kb on - strand, within CA265_RS22155 at 5445.793 kb on - strand, within CA265_RS22155 at 5445.834 kb on + strand, within CA265_RS22155 at 5445.876 kb on + strand, within CA265_RS22155 at 5445.876 kb on + strand, within CA265_RS22155 at 5445.877 kb on - strand, within CA265_RS22155 at 5445.890 kb on - strand, within CA265_RS22155 at 5445.968 kb on + strand, within CA265_RS22155 at 5445.969 kb on - strand, within CA265_RS22155 at 5446.028 kb on - strand, within CA265_RS22155 at 5446.168 kb on - strand at 5446.177 kb on + strand at 5446.177 kb on + strand at 5446.177 kb on + strand at 5446.178 kb on - strand at 5446.256 kb on + strand at 5446.268 kb on + strand at 5446.276 kb on + strand at 5446.277 kb on - strand at 5446.341 kb on - strand at 5446.627 kb on - strand, within CA265_RS22160 at 5446.857 kb on - strand at 5446.857 kb on - strand at 5446.879 kb on + strand at 5446.879 kb on + strand at 5446.944 kb on - strand at 5446.944 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 5,444,550 + CA265_RS22150 0.37 -0.4 5,444,550 + CA265_RS22150 0.37 -0.3 5,444,551 - CA265_RS22150 0.38 -1.8 5,444,551 - CA265_RS22150 0.38 -0.9 5,444,583 + CA265_RS22150 0.40 +0.1 5,444,671 + CA265_RS22150 0.46 +0.2 5,444,672 - CA265_RS22150 0.46 +0.5 5,444,785 - CA265_RS22150 0.54 -0.2 5,444,788 + CA265_RS22150 0.55 -0.1 5,444,789 - CA265_RS22150 0.55 +1.4 5,444,789 - CA265_RS22150 0.55 +0.6 5,444,809 - CA265_RS22150 0.56 +0.3 5,444,889 - +1.2 5,444,892 - CA265_RS22150 0.62 -0.1 5,445,076 + CA265_RS22150 0.75 -0.6 5,445,077 - CA265_RS22150 0.75 +0.5 5,445,085 - CA265_RS22150 0.76 -0.0 5,445,116 + CA265_RS22150 0.78 -0.3 5,445,118 + CA265_RS22150 0.78 -1.8 5,445,119 - CA265_RS22150 0.78 -1.6 5,445,208 + CA265_RS22150 0.85 +1.4 5,445,386 - -1.1 5,445,398 - +0.6 5,445,398 - -1.3 5,445,404 + -1.1 5,445,450 + -0.7 5,445,451 - +0.4 5,445,479 + -0.3 5,445,486 + +0.1 5,445,552 + -1.9 5,445,552 + -0.2 5,445,553 - -0.3 5,445,718 - CA265_RS22155 0.31 +0.2 5,445,718 - CA265_RS22155 0.31 +1.2 5,445,718 - CA265_RS22155 0.31 +1.3 5,445,793 - CA265_RS22155 0.44 -1.3 5,445,793 - CA265_RS22155 0.44 -0.4 5,445,834 + CA265_RS22155 0.51 -1.0 5,445,876 + CA265_RS22155 0.58 -2.1 5,445,876 + CA265_RS22155 0.58 +0.4 5,445,877 - CA265_RS22155 0.58 -0.4 5,445,890 - CA265_RS22155 0.61 -0.2 5,445,968 + CA265_RS22155 0.74 +0.2 5,445,969 - CA265_RS22155 0.75 -0.3 5,446,028 - CA265_RS22155 0.85 -1.6 5,446,168 - -0.5 5,446,177 + -0.8 5,446,177 + -0.9 5,446,177 + +0.1 5,446,178 - -0.3 5,446,256 + -0.8 5,446,268 + +1.5 5,446,276 + +0.3 5,446,277 - +0.9 5,446,341 - +0.4 5,446,627 - CA265_RS22160 0.50 -1.6 5,446,857 - +0.3 5,446,857 - +0.1 5,446,879 + -0.1 5,446,879 + +0.9 5,446,944 - -0.4 5,446,944 - -0.5
Or see this region's nucleotide sequence