Experiment: rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20425 and ABZR87_RS20430 overlap by 4 nucleotides ABZR87_RS20430 and ABZR87_RS20435 overlap by 4 nucleotides ABZR87_RS20435 and ABZR87_RS20440 are separated by 270 nucleotides ABZR87_RS20440 and ABZR87_RS20445 are separated by 239 nucleotides
ABZR87_RS20425: ABZR87_RS20425 - EAL domain-containing protein, at 969,247 to 971,259
_RS20425
ABZR87_RS20430: ABZR87_RS20430 - YfiR family protein, at 971,256 to 971,828
_RS20430
ABZR87_RS20435: ABZR87_RS20435 - TonB-dependent receptor, at 971,825 to 973,795
_RS20435
ABZR87_RS20440: ABZR87_RS20440 - F0F1 ATP synthase subunit epsilon, at 974,066 to 974,485
_RS20440
ABZR87_RS20445: ABZR87_RS20445 - LysR substrate-binding domain-containing protein, at 974,725 to 975,660
_RS20445
Position (kb) 971
972
973
974 Strain fitness (log2 ratio) -2
-1
0
1
2 at 970.888 kb on + strand, within ABZR87_RS20425 at 970.889 kb on - strand, within ABZR87_RS20425 at 970.889 kb on - strand, within ABZR87_RS20425 at 970.952 kb on + strand, within ABZR87_RS20425 at 970.953 kb on - strand, within ABZR87_RS20425 at 971.671 kb on + strand, within ABZR87_RS20430 at 971.671 kb on + strand, within ABZR87_RS20430 at 971.671 kb on + strand, within ABZR87_RS20430 at 971.671 kb on + strand, within ABZR87_RS20430 at 971.838 kb on + strand at 971.838 kb on + strand at 971.838 kb on + strand at 971.839 kb on - strand at 971.937 kb on + strand at 971.938 kb on - strand at 971.938 kb on - strand at 972.006 kb on + strand at 972.048 kb on + strand, within ABZR87_RS20435 at 972.048 kb on + strand, within ABZR87_RS20435 at 972.049 kb on - strand, within ABZR87_RS20435 at 972.049 kb on - strand, within ABZR87_RS20435 at 972.177 kb on + strand, within ABZR87_RS20435 at 972.177 kb on + strand, within ABZR87_RS20435 at 972.177 kb on + strand, within ABZR87_RS20435 at 972.178 kb on - strand, within ABZR87_RS20435 at 972.219 kb on + strand, within ABZR87_RS20435 at 972.385 kb on - strand, within ABZR87_RS20435 at 972.385 kb on - strand, within ABZR87_RS20435 at 972.451 kb on - strand, within ABZR87_RS20435 at 972.451 kb on - strand, within ABZR87_RS20435 at 972.451 kb on - strand, within ABZR87_RS20435 at 972.492 kb on + strand, within ABZR87_RS20435 at 972.554 kb on + strand, within ABZR87_RS20435 at 972.554 kb on + strand, within ABZR87_RS20435 at 972.555 kb on - strand, within ABZR87_RS20435 at 972.555 kb on - strand, within ABZR87_RS20435 at 972.582 kb on + strand, within ABZR87_RS20435 at 972.639 kb on + strand, within ABZR87_RS20435 at 972.640 kb on - strand, within ABZR87_RS20435 at 972.678 kb on + strand, within ABZR87_RS20435 at 972.688 kb on - strand, within ABZR87_RS20435 at 972.697 kb on + strand, within ABZR87_RS20435 at 972.724 kb on - strand, within ABZR87_RS20435 at 972.724 kb on - strand, within ABZR87_RS20435 at 972.802 kb on - strand, within ABZR87_RS20435 at 972.802 kb on - strand, within ABZR87_RS20435 at 972.852 kb on + strand, within ABZR87_RS20435 at 972.852 kb on + strand, within ABZR87_RS20435 at 972.852 kb on + strand, within ABZR87_RS20435 at 972.852 kb on + strand, within ABZR87_RS20435 at 972.852 kb on + strand, within ABZR87_RS20435 at 972.852 kb on + strand, within ABZR87_RS20435 at 972.852 kb on + strand, within ABZR87_RS20435 at 972.852 kb on + strand, within ABZR87_RS20435 at 972.852 kb on + strand, within ABZR87_RS20435 at 972.852 kb on + strand, within ABZR87_RS20435 at 972.853 kb on - strand, within ABZR87_RS20435 at 972.853 kb on - strand, within ABZR87_RS20435 at 972.853 kb on - strand, within ABZR87_RS20435 at 972.853 kb on - strand, within ABZR87_RS20435 at 972.853 kb on - strand, within ABZR87_RS20435 at 972.853 kb on - strand, within ABZR87_RS20435 at 972.853 kb on - strand, within ABZR87_RS20435 at 972.853 kb on - strand, within ABZR87_RS20435 at 972.853 kb on - strand, within ABZR87_RS20435 at 972.853 kb on - strand, within ABZR87_RS20435 at 972.858 kb on + strand, within ABZR87_RS20435 at 972.858 kb on + strand, within ABZR87_RS20435 at 972.858 kb on + strand, within ABZR87_RS20435 at 972.859 kb on - strand, within ABZR87_RS20435 at 972.859 kb on - strand, within ABZR87_RS20435 at 972.877 kb on - strand, within ABZR87_RS20435 at 973.021 kb on + strand, within ABZR87_RS20435 at 973.021 kb on + strand, within ABZR87_RS20435 at 973.101 kb on + strand, within ABZR87_RS20435 at 973.155 kb on + strand, within ABZR87_RS20435 at 973.350 kb on + strand, within ABZR87_RS20435 at 973.377 kb on + strand, within ABZR87_RS20435 at 973.378 kb on - strand, within ABZR87_RS20435 at 973.536 kb on + strand, within ABZR87_RS20435 at 973.548 kb on + strand, within ABZR87_RS20435 at 973.549 kb on - strand, within ABZR87_RS20435 at 973.549 kb on - strand, within ABZR87_RS20435 at 973.549 kb on - strand, within ABZR87_RS20435 at 973.549 kb on - strand, within ABZR87_RS20435 at 973.557 kb on + strand, within ABZR87_RS20435 at 973.557 kb on + strand, within ABZR87_RS20435 at 973.557 kb on + strand, within ABZR87_RS20435 at 973.557 kb on + strand, within ABZR87_RS20435 at 973.557 kb on + strand, within ABZR87_RS20435 at 973.558 kb on - strand, within ABZR87_RS20435 at 973.558 kb on - strand, within ABZR87_RS20435 at 973.605 kb on + strand at 973.605 kb on + strand at 973.605 kb on + strand at 973.671 kb on + strand at 973.671 kb on + strand at 973.671 kb on + strand at 973.671 kb on + strand at 973.672 kb on - strand at 973.672 kb on - strand at 973.980 kb on + strand at 973.981 kb on - strand at 973.992 kb on - strand at 974.440 kb on - strand, within ABZR87_RS20440 at 974.509 kb on - strand at 974.509 kb on - strand at 974.509 kb on - strand at 974.638 kb on + strand at 974.638 kb on + strand at 974.655 kb on + strand at 974.655 kb on + strand at 974.656 kb on - strand at 974.656 kb on - strand at 974.656 kb on - strand at 974.656 kb on - strand at 974.674 kb on + strand at 974.674 kb on + strand at 974.674 kb on + strand at 974.674 kb on + strand at 974.675 kb on - strand at 974.738 kb on + strand at 974.738 kb on + strand at 974.738 kb on + strand at 974.738 kb on + strand at 974.738 kb on + strand at 974.738 kb on + strand at 974.738 kb on + strand at 974.739 kb on - strand at 974.739 kb on - strand at 974.739 kb on - strand at 974.739 kb on - strand at 974.739 kb on - strand at 974.739 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB remove 970,888 + ABZR87_RS20425 0.82 +1.5 970,889 - ABZR87_RS20425 0.82 +1.2 970,889 - ABZR87_RS20425 0.82 -2.3 970,952 + ABZR87_RS20425 0.85 -0.1 970,953 - ABZR87_RS20425 0.85 +0.1 971,671 + ABZR87_RS20430 0.72 -1.2 971,671 + ABZR87_RS20430 0.72 +2.6 971,671 + ABZR87_RS20430 0.72 +1.2 971,671 + ABZR87_RS20430 0.72 +0.2 971,838 + +0.7 971,838 + +0.3 971,838 + +2.2 971,839 - -0.2 971,937 + +0.3 971,938 - +0.2 971,938 - +0.5 972,006 + +0.7 972,048 + ABZR87_RS20435 0.11 +2.5 972,048 + ABZR87_RS20435 0.11 -0.7 972,049 - ABZR87_RS20435 0.11 -0.9 972,049 - ABZR87_RS20435 0.11 +1.3 972,177 + ABZR87_RS20435 0.18 -1.1 972,177 + ABZR87_RS20435 0.18 +0.3 972,177 + ABZR87_RS20435 0.18 -0.7 972,178 - ABZR87_RS20435 0.18 +0.4 972,219 + ABZR87_RS20435 0.20 -1.8 972,385 - ABZR87_RS20435 0.28 +0.8 972,385 - ABZR87_RS20435 0.28 -1.6 972,451 - ABZR87_RS20435 0.32 -0.6 972,451 - ABZR87_RS20435 0.32 +0.2 972,451 - ABZR87_RS20435 0.32 +0.1 972,492 + ABZR87_RS20435 0.34 -0.6 972,554 + ABZR87_RS20435 0.37 +0.1 972,554 + ABZR87_RS20435 0.37 +1.7 972,555 - ABZR87_RS20435 0.37 +1.9 972,555 - ABZR87_RS20435 0.37 +1.1 972,582 + ABZR87_RS20435 0.38 +0.1 972,639 + ABZR87_RS20435 0.41 +0.2 972,640 - ABZR87_RS20435 0.41 +0.9 972,678 + ABZR87_RS20435 0.43 -0.1 972,688 - ABZR87_RS20435 0.44 -1.1 972,697 + ABZR87_RS20435 0.44 -0.1 972,724 - ABZR87_RS20435 0.46 +0.4 972,724 - ABZR87_RS20435 0.46 +0.6 972,802 - ABZR87_RS20435 0.50 +0.0 972,802 - ABZR87_RS20435 0.50 +0.7 972,852 + ABZR87_RS20435 0.52 -0.1 972,852 + ABZR87_RS20435 0.52 -0.6 972,852 + ABZR87_RS20435 0.52 +1.2 972,852 + ABZR87_RS20435 0.52 -0.5 972,852 + ABZR87_RS20435 0.52 -0.4 972,852 + ABZR87_RS20435 0.52 +0.6 972,852 + ABZR87_RS20435 0.52 -0.1 972,852 + ABZR87_RS20435 0.52 +0.4 972,852 + ABZR87_RS20435 0.52 +0.7 972,852 + ABZR87_RS20435 0.52 +0.8 972,853 - ABZR87_RS20435 0.52 -1.5 972,853 - ABZR87_RS20435 0.52 +0.7 972,853 - ABZR87_RS20435 0.52 +0.3 972,853 - ABZR87_RS20435 0.52 -0.6 972,853 - ABZR87_RS20435 0.52 +0.8 972,853 - ABZR87_RS20435 0.52 +1.2 972,853 - ABZR87_RS20435 0.52 +1.4 972,853 - ABZR87_RS20435 0.52 -0.1 972,853 - ABZR87_RS20435 0.52 +0.7 972,853 - ABZR87_RS20435 0.52 +0.3 972,858 + ABZR87_RS20435 0.52 +0.2 972,858 + ABZR87_RS20435 0.52 +0.3 972,858 + ABZR87_RS20435 0.52 +0.3 972,859 - ABZR87_RS20435 0.52 +1.0 972,859 - ABZR87_RS20435 0.52 -0.9 972,877 - ABZR87_RS20435 0.53 +1.3 973,021 + ABZR87_RS20435 0.61 +0.6 973,021 + ABZR87_RS20435 0.61 +0.5 973,101 + ABZR87_RS20435 0.65 +0.9 973,155 + ABZR87_RS20435 0.67 -0.1 973,350 + ABZR87_RS20435 0.77 -0.5 973,377 + ABZR87_RS20435 0.79 -0.4 973,378 - ABZR87_RS20435 0.79 -0.5 973,536 + ABZR87_RS20435 0.87 -0.8 973,548 + ABZR87_RS20435 0.87 -0.5 973,549 - ABZR87_RS20435 0.87 -1.3 973,549 - ABZR87_RS20435 0.87 +0.1 973,549 - ABZR87_RS20435 0.87 -0.2 973,549 - ABZR87_RS20435 0.87 +0.3 973,557 + ABZR87_RS20435 0.88 -1.6 973,557 + ABZR87_RS20435 0.88 +1.1 973,557 + ABZR87_RS20435 0.88 +0.4 973,557 + ABZR87_RS20435 0.88 -0.7 973,557 + ABZR87_RS20435 0.88 +1.4 973,558 - ABZR87_RS20435 0.88 +0.6 973,558 - ABZR87_RS20435 0.88 +0.5 973,605 + +0.1 973,605 + -0.2 973,605 + +0.2 973,671 + -0.9 973,671 + +0.7 973,671 + +2.1 973,671 + +1.5 973,672 - -0.1 973,672 - -2.7 973,980 + -0.6 973,981 - -1.1 973,992 - -0.7 974,440 - ABZR87_RS20440 0.89 -2.1 974,509 - -1.3 974,509 - -0.5 974,509 - +1.1 974,638 + +0.4 974,638 + -0.6 974,655 + -0.3 974,655 + -0.0 974,656 - +0.2 974,656 - +1.1 974,656 - -0.8 974,656 - -1.1 974,674 + -0.9 974,674 + +1.1 974,674 + +0.3 974,674 + +0.1 974,675 - +1.2 974,738 + +0.8 974,738 + -1.4 974,738 + +0.3 974,738 + +1.0 974,738 + +1.0 974,738 + -0.5 974,738 + -0.8 974,739 - -0.0 974,739 - -1.0 974,739 - +0.7 974,739 - -1.0 974,739 - -0.2 974,739 - -0.5
Or see this region's nucleotide sequence