Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20150

Experiment: rhizosphere sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS20145 and ABZR87_RS20150 are separated by 58 nucleotidesABZR87_RS20150 and ABZR87_RS20155 overlap by 4 nucleotidesABZR87_RS20155 and ABZR87_RS20160 are separated by 2 nucleotides ABZR87_RS20145: ABZR87_RS20145 - hypothetical protein, at 900,231 to 901,715 _RS20145 ABZR87_RS20150: ABZR87_RS20150 - type VI secretion system membrane subunit TssM, at 901,774 to 905,724 _RS20150 ABZR87_RS20155: ABZR87_RS20155 - type VI secretion system-associated protein TagF, at 905,721 to 906,716 _RS20155 ABZR87_RS20160: ABZR87_RS20160 - OmpA family protein, at 906,719 to 907,537 _RS20160 Position (kb) 901 902 903 904 905 906Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 901.342 kb on + strand, within ABZR87_RS20145at 901.342 kb on + strand, within ABZR87_RS20145at 901.342 kb on + strand, within ABZR87_RS20145at 901.343 kb on - strand, within ABZR87_RS20145at 901.343 kb on - strand, within ABZR87_RS20145at 901.575 kb on + strandat 901.576 kb on - strandat 901.576 kb on - strandat 901.576 kb on - strandat 901.576 kb on - strandat 901.579 kb on + strandat 901.579 kb on + strandat 901.579 kb on + strandat 901.579 kb on + strandat 901.579 kb on + strandat 901.580 kb on - strandat 901.580 kb on - strandat 901.580 kb on - strandat 901.580 kb on - strandat 901.659 kb on - strandat 901.659 kb on - strandat 901.846 kb on + strandat 901.936 kb on + strandat 901.936 kb on + strandat 901.936 kb on + strandat 901.936 kb on + strandat 901.936 kb on + strandat 901.937 kb on - strandat 901.937 kb on - strandat 901.937 kb on - strandat 901.937 kb on - strandat 902.129 kb on - strandat 902.143 kb on + strandat 902.144 kb on - strandat 902.144 kb on - strandat 902.144 kb on - strandat 902.144 kb on - strandat 902.144 kb on - strandat 902.178 kb on + strand, within ABZR87_RS20150at 902.179 kb on - strand, within ABZR87_RS20150at 902.260 kb on - strand, within ABZR87_RS20150at 902.375 kb on - strand, within ABZR87_RS20150at 902.513 kb on + strand, within ABZR87_RS20150at 902.513 kb on + strand, within ABZR87_RS20150at 902.514 kb on - strand, within ABZR87_RS20150at 902.514 kb on - strand, within ABZR87_RS20150at 902.514 kb on - strand, within ABZR87_RS20150at 902.527 kb on + strand, within ABZR87_RS20150at 902.528 kb on - strand, within ABZR87_RS20150at 902.528 kb on - strand, within ABZR87_RS20150at 902.528 kb on - strand, within ABZR87_RS20150at 902.528 kb on - strand, within ABZR87_RS20150at 902.801 kb on + strand, within ABZR87_RS20150at 902.801 kb on + strand, within ABZR87_RS20150at 902.802 kb on - strand, within ABZR87_RS20150at 902.845 kb on + strand, within ABZR87_RS20150at 902.846 kb on - strand, within ABZR87_RS20150at 902.869 kb on + strand, within ABZR87_RS20150at 902.869 kb on + strand, within ABZR87_RS20150at 902.869 kb on + strand, within ABZR87_RS20150at 902.870 kb on - strand, within ABZR87_RS20150at 902.870 kb on - strand, within ABZR87_RS20150at 903.087 kb on + strand, within ABZR87_RS20150at 903.144 kb on + strand, within ABZR87_RS20150at 903.145 kb on + strand, within ABZR87_RS20150at 903.145 kb on + strand, within ABZR87_RS20150at 903.145 kb on + strand, within ABZR87_RS20150at 903.145 kb on + strand, within ABZR87_RS20150at 903.145 kb on + strand, within ABZR87_RS20150at 903.145 kb on + strand, within ABZR87_RS20150at 903.145 kb on + strand, within ABZR87_RS20150at 903.146 kb on - strand, within ABZR87_RS20150at 903.146 kb on - strand, within ABZR87_RS20150at 903.146 kb on - strand, within ABZR87_RS20150at 903.146 kb on - strand, within ABZR87_RS20150at 903.146 kb on - strand, within ABZR87_RS20150at 903.146 kb on - strand, within ABZR87_RS20150at 903.146 kb on - strand, within ABZR87_RS20150at 903.146 kb on - strand, within ABZR87_RS20150at 903.325 kb on + strand, within ABZR87_RS20150at 903.326 kb on - strand, within ABZR87_RS20150at 903.326 kb on - strand, within ABZR87_RS20150at 903.348 kb on + strand, within ABZR87_RS20150at 903.348 kb on + strand, within ABZR87_RS20150at 903.348 kb on + strand, within ABZR87_RS20150at 903.348 kb on + strand, within ABZR87_RS20150at 903.348 kb on + strand, within ABZR87_RS20150at 903.348 kb on + strand, within ABZR87_RS20150at 903.348 kb on + strand, within ABZR87_RS20150at 903.348 kb on + strand, within ABZR87_RS20150at 903.348 kb on + strand, within ABZR87_RS20150at 903.349 kb on - strand, within ABZR87_RS20150at 903.349 kb on - strand, within ABZR87_RS20150at 903.349 kb on - strand, within ABZR87_RS20150at 903.349 kb on - strand, within ABZR87_RS20150at 903.349 kb on - strand, within ABZR87_RS20150at 903.364 kb on + strand, within ABZR87_RS20150at 903.367 kb on + strand, within ABZR87_RS20150at 903.367 kb on + strand, within ABZR87_RS20150at 903.367 kb on + strand, within ABZR87_RS20150at 903.368 kb on - strand, within ABZR87_RS20150at 903.368 kb on - strand, within ABZR87_RS20150at 903.368 kb on - strand, within ABZR87_RS20150at 903.368 kb on - strand, within ABZR87_RS20150at 903.588 kb on + strand, within ABZR87_RS20150at 903.613 kb on + strand, within ABZR87_RS20150at 903.614 kb on - strand, within ABZR87_RS20150at 903.614 kb on - strand, within ABZR87_RS20150at 903.614 kb on - strand, within ABZR87_RS20150at 903.650 kb on - strand, within ABZR87_RS20150at 903.667 kb on + strand, within ABZR87_RS20150at 903.668 kb on - strand, within ABZR87_RS20150at 903.668 kb on - strand, within ABZR87_RS20150at 903.934 kb on + strand, within ABZR87_RS20150at 903.934 kb on + strand, within ABZR87_RS20150at 903.967 kb on + strand, within ABZR87_RS20150at 904.030 kb on + strand, within ABZR87_RS20150at 904.031 kb on - strand, within ABZR87_RS20150at 904.072 kb on + strand, within ABZR87_RS20150at 904.073 kb on - strand, within ABZR87_RS20150at 904.207 kb on + strand, within ABZR87_RS20150at 904.207 kb on + strand, within ABZR87_RS20150at 904.207 kb on + strand, within ABZR87_RS20150at 904.207 kb on + strand, within ABZR87_RS20150at 904.207 kb on + strand, within ABZR87_RS20150at 904.208 kb on - strand, within ABZR87_RS20150at 904.218 kb on - strand, within ABZR87_RS20150at 904.219 kb on + strand, within ABZR87_RS20150at 904.219 kb on + strand, within ABZR87_RS20150at 904.354 kb on + strand, within ABZR87_RS20150at 904.354 kb on + strand, within ABZR87_RS20150at 904.355 kb on - strand, within ABZR87_RS20150at 904.355 kb on - strand, within ABZR87_RS20150at 904.355 kb on - strand, within ABZR87_RS20150at 904.597 kb on + strand, within ABZR87_RS20150at 904.597 kb on + strand, within ABZR87_RS20150at 904.598 kb on - strand, within ABZR87_RS20150at 904.598 kb on - strand, within ABZR87_RS20150at 904.598 kb on - strand, within ABZR87_RS20150at 904.598 kb on - strand, within ABZR87_RS20150at 904.732 kb on + strand, within ABZR87_RS20150at 904.732 kb on + strand, within ABZR87_RS20150at 904.732 kb on + strand, within ABZR87_RS20150at 904.733 kb on - strand, within ABZR87_RS20150at 904.733 kb on - strand, within ABZR87_RS20150at 904.733 kb on - strand, within ABZR87_RS20150at 904.733 kb on - strand, within ABZR87_RS20150at 904.733 kb on - strand, within ABZR87_RS20150at 904.733 kb on - strand, within ABZR87_RS20150at 904.736 kb on + strand, within ABZR87_RS20150at 904.736 kb on + strand, within ABZR87_RS20150at 904.736 kb on + strand, within ABZR87_RS20150at 904.736 kb on + strand, within ABZR87_RS20150at 904.736 kb on + strand, within ABZR87_RS20150at 904.736 kb on + strand, within ABZR87_RS20150at 904.737 kb on - strand, within ABZR87_RS20150at 904.737 kb on - strand, within ABZR87_RS20150at 904.737 kb on - strand, within ABZR87_RS20150at 904.737 kb on - strand, within ABZR87_RS20150at 904.737 kb on - strand, within ABZR87_RS20150at 904.737 kb on - strand, within ABZR87_RS20150at 904.737 kb on - strand, within ABZR87_RS20150at 904.819 kb on + strand, within ABZR87_RS20150at 904.819 kb on + strand, within ABZR87_RS20150at 904.879 kb on + strand, within ABZR87_RS20150at 904.879 kb on + strand, within ABZR87_RS20150at 904.880 kb on - strand, within ABZR87_RS20150at 904.880 kb on - strand, within ABZR87_RS20150at 904.880 kb on - strand, within ABZR87_RS20150at 904.880 kb on - strand, within ABZR87_RS20150at 904.880 kb on - strand, within ABZR87_RS20150at 904.912 kb on + strand, within ABZR87_RS20150at 904.912 kb on + strand, within ABZR87_RS20150at 904.913 kb on - strand, within ABZR87_RS20150at 904.913 kb on - strand, within ABZR87_RS20150at 904.913 kb on - strand, within ABZR87_RS20150at 905.224 kb on + strand, within ABZR87_RS20150at 905.225 kb on - strand, within ABZR87_RS20150at 905.225 kb on - strand, within ABZR87_RS20150at 905.880 kb on + strand, within ABZR87_RS20155at 905.880 kb on + strand, within ABZR87_RS20155at 905.880 kb on + strand, within ABZR87_RS20155at 905.880 kb on + strand, within ABZR87_RS20155at 905.880 kb on + strand, within ABZR87_RS20155at 905.880 kb on + strand, within ABZR87_RS20155at 905.881 kb on - strand, within ABZR87_RS20155at 905.881 kb on - strand, within ABZR87_RS20155at 905.881 kb on - strand, within ABZR87_RS20155at 905.881 kb on - strand, within ABZR87_RS20155at 905.881 kb on - strand, within ABZR87_RS20155at 906.387 kb on + strand, within ABZR87_RS20155at 906.388 kb on - strand, within ABZR87_RS20155at 906.558 kb on + strand, within ABZR87_RS20155at 906.558 kb on + strand, within ABZR87_RS20155at 906.559 kb on - strand, within ABZR87_RS20155at 906.621 kb on + strandat 906.621 kb on + strandat 906.622 kb on - strandat 906.645 kb on + strandat 906.686 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB
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901,342 + ABZR87_RS20145 0.75 +0.2
901,342 + ABZR87_RS20145 0.75 +0.2
901,342 + ABZR87_RS20145 0.75 +1.7
901,343 - ABZR87_RS20145 0.75 -0.4
901,343 - ABZR87_RS20145 0.75 +1.7
901,575 + -0.6
901,576 - -0.1
901,576 - +0.1
901,576 - +0.6
901,576 - -0.2
901,579 + -0.8
901,579 + +1.4
901,579 + -0.1
901,579 + -0.8
901,579 + -1.2
901,580 - +0.0
901,580 - +1.5
901,580 - -1.6
901,580 - -0.1
901,659 - +1.1
901,659 - +0.3
901,846 + -0.2
901,936 + +0.7
901,936 + +0.6
901,936 + -0.2
901,936 + -1.5
901,936 + -1.5
901,937 - -0.6
901,937 - -0.4
901,937 - -0.2
901,937 - +1.2
902,129 - -1.4
902,143 + +2.7
902,144 - -0.2
902,144 - -0.8
902,144 - -0.5
902,144 - -0.3
902,144 - +0.3
902,178 + ABZR87_RS20150 0.10 +0.9
902,179 - ABZR87_RS20150 0.10 +0.7
902,260 - ABZR87_RS20150 0.12 +0.1
902,375 - ABZR87_RS20150 0.15 +0.4
902,513 + ABZR87_RS20150 0.19 +1.7
902,513 + ABZR87_RS20150 0.19 -1.2
902,514 - ABZR87_RS20150 0.19 +0.6
902,514 - ABZR87_RS20150 0.19 +1.5
902,514 - ABZR87_RS20150 0.19 +0.5
902,527 + ABZR87_RS20150 0.19 -1.5
902,528 - ABZR87_RS20150 0.19 +0.9
902,528 - ABZR87_RS20150 0.19 +2.9
902,528 - ABZR87_RS20150 0.19 -0.2
902,528 - ABZR87_RS20150 0.19 -0.1
902,801 + ABZR87_RS20150 0.26 -1.5
902,801 + ABZR87_RS20150 0.26 +0.6
902,802 - ABZR87_RS20150 0.26 -0.2
902,845 + ABZR87_RS20150 0.27 +2.5
902,846 - ABZR87_RS20150 0.27 -0.5
902,869 + ABZR87_RS20150 0.28 +1.1
902,869 + ABZR87_RS20150 0.28 +0.2
902,869 + ABZR87_RS20150 0.28 -1.3
902,870 - ABZR87_RS20150 0.28 -0.3
902,870 - ABZR87_RS20150 0.28 -0.3
903,087 + ABZR87_RS20150 0.33 +0.4
903,144 + ABZR87_RS20150 0.35 -1.0
903,145 + ABZR87_RS20150 0.35 -2.7
903,145 + ABZR87_RS20150 0.35 +0.1
903,145 + ABZR87_RS20150 0.35 -2.5
903,145 + ABZR87_RS20150 0.35 -0.1
903,145 + ABZR87_RS20150 0.35 -0.1
903,145 + ABZR87_RS20150 0.35 +1.1
903,145 + ABZR87_RS20150 0.35 +0.1
903,146 - ABZR87_RS20150 0.35 +0.8
903,146 - ABZR87_RS20150 0.35 -0.0
903,146 - ABZR87_RS20150 0.35 -0.4
903,146 - ABZR87_RS20150 0.35 -0.1
903,146 - ABZR87_RS20150 0.35 -1.3
903,146 - ABZR87_RS20150 0.35 -0.4
903,146 - ABZR87_RS20150 0.35 +0.2
903,146 - ABZR87_RS20150 0.35 -0.9
903,325 + ABZR87_RS20150 0.39 -0.9
903,326 - ABZR87_RS20150 0.39 +0.2
903,326 - ABZR87_RS20150 0.39 +1.2
903,348 + ABZR87_RS20150 0.40 -1.1
903,348 + ABZR87_RS20150 0.40 -3.1
903,348 + ABZR87_RS20150 0.40 -0.1
903,348 + ABZR87_RS20150 0.40 +0.2
903,348 + ABZR87_RS20150 0.40 -0.3
903,348 + ABZR87_RS20150 0.40 +0.8
903,348 + ABZR87_RS20150 0.40 -0.1
903,348 + ABZR87_RS20150 0.40 +0.3
903,348 + ABZR87_RS20150 0.40 +1.0
903,349 - ABZR87_RS20150 0.40 -0.5
903,349 - ABZR87_RS20150 0.40 -0.4
903,349 - ABZR87_RS20150 0.40 -0.3
903,349 - ABZR87_RS20150 0.40 +0.8
903,349 - ABZR87_RS20150 0.40 +1.0
903,364 + ABZR87_RS20150 0.40 +2.2
903,367 + ABZR87_RS20150 0.40 +0.9
903,367 + ABZR87_RS20150 0.40 +0.5
903,367 + ABZR87_RS20150 0.40 +0.7
903,368 - ABZR87_RS20150 0.40 +0.5
903,368 - ABZR87_RS20150 0.40 -2.1
903,368 - ABZR87_RS20150 0.40 -1.2
903,368 - ABZR87_RS20150 0.40 +0.6
903,588 + ABZR87_RS20150 0.46 -0.8
903,613 + ABZR87_RS20150 0.47 -0.2
903,614 - ABZR87_RS20150 0.47 -0.9
903,614 - ABZR87_RS20150 0.47 -1.6
903,614 - ABZR87_RS20150 0.47 +0.3
903,650 - ABZR87_RS20150 0.47 -0.5
903,667 + ABZR87_RS20150 0.48 -0.1
903,668 - ABZR87_RS20150 0.48 -0.0
903,668 - ABZR87_RS20150 0.48 +2.1
903,934 + ABZR87_RS20150 0.55 -1.0
903,934 + ABZR87_RS20150 0.55 +0.3
903,967 + ABZR87_RS20150 0.56 +0.6
904,030 + ABZR87_RS20150 0.57 +0.3
904,031 - ABZR87_RS20150 0.57 +1.1
904,072 + ABZR87_RS20150 0.58 -1.1
904,073 - ABZR87_RS20150 0.58 +1.8
904,207 + ABZR87_RS20150 0.62 +0.3
904,207 + ABZR87_RS20150 0.62 +1.4
904,207 + ABZR87_RS20150 0.62 +1.7
904,207 + ABZR87_RS20150 0.62 +0.6
904,207 + ABZR87_RS20150 0.62 +1.3
904,208 - ABZR87_RS20150 0.62 -1.2
904,218 - ABZR87_RS20150 0.62 -1.6
904,219 + ABZR87_RS20150 0.62 -0.5
904,219 + ABZR87_RS20150 0.62 -1.5
904,354 + ABZR87_RS20150 0.65 +0.4
904,354 + ABZR87_RS20150 0.65 +1.0
904,355 - ABZR87_RS20150 0.65 -1.7
904,355 - ABZR87_RS20150 0.65 +0.1
904,355 - ABZR87_RS20150 0.65 -0.8
904,597 + ABZR87_RS20150 0.71 -2.0
904,597 + ABZR87_RS20150 0.71 +1.3
904,598 - ABZR87_RS20150 0.71 -0.4
904,598 - ABZR87_RS20150 0.71 +0.1
904,598 - ABZR87_RS20150 0.71 -0.3
904,598 - ABZR87_RS20150 0.71 +1.1
904,732 + ABZR87_RS20150 0.75 -0.2
904,732 + ABZR87_RS20150 0.75 -1.2
904,732 + ABZR87_RS20150 0.75 +0.5
904,733 - ABZR87_RS20150 0.75 +1.1
904,733 - ABZR87_RS20150 0.75 +0.3
904,733 - ABZR87_RS20150 0.75 +0.5
904,733 - ABZR87_RS20150 0.75 +0.5
904,733 - ABZR87_RS20150 0.75 -1.3
904,733 - ABZR87_RS20150 0.75 +0.3
904,736 + ABZR87_RS20150 0.75 +0.4
904,736 + ABZR87_RS20150 0.75 +0.2
904,736 + ABZR87_RS20150 0.75 -1.1
904,736 + ABZR87_RS20150 0.75 -2.3
904,736 + ABZR87_RS20150 0.75 +1.0
904,736 + ABZR87_RS20150 0.75 +0.1
904,737 - ABZR87_RS20150 0.75 -1.1
904,737 - ABZR87_RS20150 0.75 +0.3
904,737 - ABZR87_RS20150 0.75 +0.5
904,737 - ABZR87_RS20150 0.75 +0.8
904,737 - ABZR87_RS20150 0.75 -0.4
904,737 - ABZR87_RS20150 0.75 +1.8
904,737 - ABZR87_RS20150 0.75 -0.9
904,819 + ABZR87_RS20150 0.77 +0.5
904,819 + ABZR87_RS20150 0.77 -0.2
904,879 + ABZR87_RS20150 0.79 +0.0
904,879 + ABZR87_RS20150 0.79 -0.7
904,880 - ABZR87_RS20150 0.79 +0.9
904,880 - ABZR87_RS20150 0.79 +0.7
904,880 - ABZR87_RS20150 0.79 -0.6
904,880 - ABZR87_RS20150 0.79 +0.4
904,880 - ABZR87_RS20150 0.79 -1.2
904,912 + ABZR87_RS20150 0.79 -1.5
904,912 + ABZR87_RS20150 0.79 -0.4
904,913 - ABZR87_RS20150 0.79 +0.2
904,913 - ABZR87_RS20150 0.79 -0.5
904,913 - ABZR87_RS20150 0.79 -0.7
905,224 + ABZR87_RS20150 0.87 +0.5
905,225 - ABZR87_RS20150 0.87 +0.4
905,225 - ABZR87_RS20150 0.87 -0.0
905,880 + ABZR87_RS20155 0.16 +1.8
905,880 + ABZR87_RS20155 0.16 +1.1
905,880 + ABZR87_RS20155 0.16 +0.1
905,880 + ABZR87_RS20155 0.16 -1.4
905,880 + ABZR87_RS20155 0.16 -1.1
905,880 + ABZR87_RS20155 0.16 +2.2
905,881 - ABZR87_RS20155 0.16 -0.9
905,881 - ABZR87_RS20155 0.16 -1.3
905,881 - ABZR87_RS20155 0.16 -0.6
905,881 - ABZR87_RS20155 0.16 -1.6
905,881 - ABZR87_RS20155 0.16 -1.0
906,387 + ABZR87_RS20155 0.67 -0.2
906,388 - ABZR87_RS20155 0.67 -1.9
906,558 + ABZR87_RS20155 0.84 +2.5
906,558 + ABZR87_RS20155 0.84 -1.6
906,559 - ABZR87_RS20155 0.84 -0.6
906,621 + -0.6
906,621 + -0.9
906,622 - -0.4
906,645 + +1.3
906,686 + -0.9

Or see this region's nucleotide sequence