Experiment: rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19730 and ABZR87_RS19735 are separated by 97 nucleotides ABZR87_RS19735 and ABZR87_RS19740 are separated by 13 nucleotides ABZR87_RS19740 and ABZR87_RS19745 are separated by 61 nucleotides ABZR87_RS19745 and ABZR87_RS19750 overlap by 4 nucleotides
ABZR87_RS19730: ABZR87_RS19730 - MerR family transcriptional regulator, at 804,240 to 804,641
_RS19730
ABZR87_RS19735: ABZR87_RS19735 - hypothetical protein, at 804,739 to 805,161
_RS19735
ABZR87_RS19740: ABZR87_RS19740 - BON domain-containing protein, at 805,175 to 805,591
_RS19740
ABZR87_RS19745: ABZR87_RS19745 - DoxX family protein, at 805,653 to 806,123
_RS19745
ABZR87_RS19750: ABZR87_RS19750 - DNA-binding domain-containing protein, at 806,120 to 806,878
_RS19750
Position (kb) 805
806 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 804.215 kb on + strand at 804.215 kb on + strand at 804.215 kb on + strand at 804.215 kb on + strand at 804.215 kb on + strand at 804.216 kb on - strand at 804.216 kb on - strand at 804.216 kb on - strand at 804.216 kb on - strand at 804.216 kb on - strand at 804.216 kb on - strand at 804.216 kb on - strand at 804.216 kb on - strand at 804.216 kb on - strand at 804.216 kb on - strand at 804.216 kb on - strand at 804.216 kb on - strand at 804.216 kb on - strand at 804.217 kb on + strand at 804.217 kb on + strand at 804.217 kb on + strand at 804.217 kb on + strand at 804.218 kb on - strand at 804.218 kb on - strand at 804.218 kb on - strand at 804.218 kb on - strand at 804.218 kb on - strand at 804.218 kb on - strand at 804.451 kb on + strand, within ABZR87_RS19730 at 804.451 kb on + strand, within ABZR87_RS19730 at 804.451 kb on + strand, within ABZR87_RS19730 at 804.451 kb on + strand, within ABZR87_RS19730 at 804.451 kb on + strand, within ABZR87_RS19730 at 804.451 kb on + strand, within ABZR87_RS19730 at 804.452 kb on - strand, within ABZR87_RS19730 at 804.452 kb on - strand, within ABZR87_RS19730 at 804.452 kb on - strand, within ABZR87_RS19730 at 804.452 kb on - strand, within ABZR87_RS19730 at 804.452 kb on - strand, within ABZR87_RS19730 at 804.535 kb on + strand, within ABZR87_RS19730 at 804.687 kb on + strand at 804.688 kb on - strand at 804.688 kb on - strand at 804.765 kb on + strand at 804.765 kb on + strand at 804.788 kb on - strand, within ABZR87_RS19735 at 804.788 kb on - strand, within ABZR87_RS19735 at 804.788 kb on - strand, within ABZR87_RS19735 at 804.788 kb on - strand, within ABZR87_RS19735 at 804.816 kb on + strand, within ABZR87_RS19735 at 804.817 kb on - strand, within ABZR87_RS19735 at 804.963 kb on + strand, within ABZR87_RS19735 at 804.994 kb on + strand, within ABZR87_RS19735 at 804.995 kb on - strand, within ABZR87_RS19735 at 805.036 kb on + strand, within ABZR87_RS19735 at 805.036 kb on + strand, within ABZR87_RS19735 at 805.230 kb on + strand, within ABZR87_RS19740 at 805.230 kb on + strand, within ABZR87_RS19740 at 805.231 kb on - strand, within ABZR87_RS19740 at 805.231 kb on - strand, within ABZR87_RS19740 at 805.231 kb on - strand, within ABZR87_RS19740 at 805.231 kb on - strand, within ABZR87_RS19740 at 805.231 kb on - strand, within ABZR87_RS19740 at 805.346 kb on - strand, within ABZR87_RS19740 at 805.449 kb on + strand, within ABZR87_RS19740 at 805.450 kb on - strand, within ABZR87_RS19740 at 805.450 kb on - strand, within ABZR87_RS19740 at 805.450 kb on - strand, within ABZR87_RS19740 at 805.520 kb on - strand, within ABZR87_RS19740 at 805.628 kb on + strand at 805.628 kb on + strand at 805.628 kb on + strand at 805.628 kb on + strand at 805.628 kb on + strand at 805.628 kb on + strand at 805.628 kb on + strand at 805.629 kb on - strand at 805.629 kb on - strand at 805.629 kb on - strand at 805.780 kb on + strand, within ABZR87_RS19745 at 805.780 kb on + strand, within ABZR87_RS19745 at 805.780 kb on + strand, within ABZR87_RS19745 at 805.927 kb on + strand, within ABZR87_RS19745 at 805.928 kb on - strand, within ABZR87_RS19745 at 805.928 kb on - strand, within ABZR87_RS19745 at 805.999 kb on + strand, within ABZR87_RS19745 at 806.000 kb on - strand, within ABZR87_RS19745 at 806.000 kb on - strand, within ABZR87_RS19745 at 806.008 kb on + strand, within ABZR87_RS19745 at 806.091 kb on - strand at 806.138 kb on - strand at 806.185 kb on - strand at 806.290 kb on + strand, within ABZR87_RS19750 at 806.541 kb on + strand, within ABZR87_RS19750 at 806.541 kb on + strand, within ABZR87_RS19750 at 806.542 kb on - strand, within ABZR87_RS19750 at 806.590 kb on - strand, within ABZR87_RS19750
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB remove 804,215 + -0.2 804,215 + -1.8 804,215 + +0.2 804,215 + +0.5 804,215 + -1.0 804,216 - +0.4 804,216 - -0.8 804,216 - -0.2 804,216 - +0.7 804,216 - -2.1 804,216 - -1.5 804,216 - -1.2 804,216 - -1.0 804,216 - +0.1 804,216 - +0.7 804,216 - +0.3 804,216 - +0.5 804,216 - -0.8 804,217 + +0.9 804,217 + +0.6 804,217 + +0.1 804,217 + +0.6 804,218 - -0.6 804,218 - +1.4 804,218 - +0.5 804,218 - -0.9 804,218 - -0.3 804,218 - -1.3 804,451 + ABZR87_RS19730 0.52 +3.3 804,451 + ABZR87_RS19730 0.52 -0.4 804,451 + ABZR87_RS19730 0.52 -0.7 804,451 + ABZR87_RS19730 0.52 -0.3 804,451 + ABZR87_RS19730 0.52 -1.4 804,451 + ABZR87_RS19730 0.52 -0.3 804,452 - ABZR87_RS19730 0.53 -0.5 804,452 - ABZR87_RS19730 0.53 -0.7 804,452 - ABZR87_RS19730 0.53 +0.9 804,452 - ABZR87_RS19730 0.53 -1.2 804,452 - ABZR87_RS19730 0.53 -0.5 804,535 + ABZR87_RS19730 0.73 +0.9 804,687 + +0.7 804,688 - +1.8 804,688 - -0.4 804,765 + +0.3 804,765 + +1.6 804,788 - ABZR87_RS19735 0.12 -0.5 804,788 - ABZR87_RS19735 0.12 -0.6 804,788 - ABZR87_RS19735 0.12 -0.3 804,788 - ABZR87_RS19735 0.12 -1.7 804,816 + ABZR87_RS19735 0.18 +0.6 804,817 - ABZR87_RS19735 0.18 -1.7 804,963 + ABZR87_RS19735 0.53 -0.1 804,994 + ABZR87_RS19735 0.60 -0.2 804,995 - ABZR87_RS19735 0.61 -0.1 805,036 + ABZR87_RS19735 0.70 -0.8 805,036 + ABZR87_RS19735 0.70 -0.1 805,230 + ABZR87_RS19740 0.13 +0.2 805,230 + ABZR87_RS19740 0.13 -0.3 805,231 - ABZR87_RS19740 0.13 +0.3 805,231 - ABZR87_RS19740 0.13 +0.1 805,231 - ABZR87_RS19740 0.13 -0.9 805,231 - ABZR87_RS19740 0.13 -2.3 805,231 - ABZR87_RS19740 0.13 -1.8 805,346 - ABZR87_RS19740 0.41 -0.3 805,449 + ABZR87_RS19740 0.66 +0.0 805,450 - ABZR87_RS19740 0.66 +0.5 805,450 - ABZR87_RS19740 0.66 +0.9 805,450 - ABZR87_RS19740 0.66 -0.3 805,520 - ABZR87_RS19740 0.83 +1.1 805,628 + +0.6 805,628 + -1.2 805,628 + -0.4 805,628 + -1.8 805,628 + -0.5 805,628 + +0.8 805,628 + -0.2 805,629 - -0.0 805,629 - +0.1 805,629 - +0.6 805,780 + ABZR87_RS19745 0.27 +0.2 805,780 + ABZR87_RS19745 0.27 -0.9 805,780 + ABZR87_RS19745 0.27 -2.3 805,927 + ABZR87_RS19745 0.58 +1.7 805,928 - ABZR87_RS19745 0.58 -0.9 805,928 - ABZR87_RS19745 0.58 +0.1 805,999 + ABZR87_RS19745 0.73 +0.2 806,000 - ABZR87_RS19745 0.74 +0.4 806,000 - ABZR87_RS19745 0.74 +2.5 806,008 + ABZR87_RS19745 0.75 +0.8 806,091 - -2.3 806,138 - -0.7 806,185 - +0.1 806,290 + ABZR87_RS19750 0.22 -0.2 806,541 + ABZR87_RS19750 0.55 -0.5 806,541 + ABZR87_RS19750 0.55 -1.9 806,542 - ABZR87_RS19750 0.56 -0.2 806,590 - ABZR87_RS19750 0.62 -1.0
Or see this region's nucleotide sequence