Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19640

Experiment: rhizosphere sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19635 and ABZR87_RS19640 are separated by 6 nucleotidesABZR87_RS19640 and ABZR87_RS19645 are separated by 32 nucleotidesABZR87_RS19645 and ABZR87_RS19650 are separated by 47 nucleotides ABZR87_RS19635: ABZR87_RS19635 - cation:proton antiporter, at 778,576 to 780,687 _RS19635 ABZR87_RS19640: ABZR87_RS19640 - patatin-like phospholipase family protein, at 780,694 to 781,956 _RS19640 ABZR87_RS19645: ABZR87_RS19645 - 3-hydroxybutyrate dehydrogenase, at 781,989 to 782,774 _RS19645 ABZR87_RS19650: ABZR87_RS19650 - acetoacetate decarboxylase, at 782,822 to 783,565 _RS19650 Position (kb) 780 781 782Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 779.977 kb on + strand, within ABZR87_RS19635at 779.977 kb on + strand, within ABZR87_RS19635at 779.977 kb on + strand, within ABZR87_RS19635at 779.978 kb on - strand, within ABZR87_RS19635at 779.978 kb on - strand, within ABZR87_RS19635at 779.978 kb on - strand, within ABZR87_RS19635at 780.062 kb on + strand, within ABZR87_RS19635at 780.062 kb on + strand, within ABZR87_RS19635at 780.196 kb on + strand, within ABZR87_RS19635at 780.196 kb on + strand, within ABZR87_RS19635at 780.197 kb on - strand, within ABZR87_RS19635at 780.359 kb on - strand, within ABZR87_RS19635at 780.359 kb on - strand, within ABZR87_RS19635at 780.366 kb on + strand, within ABZR87_RS19635at 780.366 kb on + strand, within ABZR87_RS19635at 780.366 kb on + strand, within ABZR87_RS19635at 780.367 kb on - strand, within ABZR87_RS19635at 780.367 kb on - strand, within ABZR87_RS19635at 780.367 kb on - strand, within ABZR87_RS19635at 780.367 kb on - strand, within ABZR87_RS19635at 780.367 kb on - strand, within ABZR87_RS19635at 780.367 kb on - strand, within ABZR87_RS19635at 780.367 kb on - strand, within ABZR87_RS19635at 780.484 kb on + strandat 780.529 kb on + strandat 780.530 kb on - strandat 780.589 kb on + strandat 780.589 kb on + strandat 780.589 kb on + strandat 780.589 kb on + strandat 780.589 kb on + strandat 780.589 kb on + strandat 780.590 kb on - strandat 780.590 kb on - strandat 780.590 kb on - strandat 780.590 kb on - strandat 780.590 kb on - strandat 780.667 kb on - strandat 780.667 kb on - strandat 780.667 kb on - strandat 780.667 kb on - strandat 780.718 kb on + strandat 780.718 kb on + strandat 780.719 kb on - strandat 780.899 kb on + strand, within ABZR87_RS19640at 780.899 kb on + strand, within ABZR87_RS19640at 780.899 kb on + strand, within ABZR87_RS19640at 780.899 kb on + strand, within ABZR87_RS19640at 780.900 kb on - strand, within ABZR87_RS19640at 780.920 kb on + strand, within ABZR87_RS19640at 780.956 kb on + strand, within ABZR87_RS19640at 780.957 kb on - strand, within ABZR87_RS19640at 780.957 kb on - strand, within ABZR87_RS19640at 780.957 kb on - strand, within ABZR87_RS19640at 781.062 kb on + strand, within ABZR87_RS19640at 781.063 kb on - strand, within ABZR87_RS19640at 781.073 kb on + strand, within ABZR87_RS19640at 781.074 kb on - strand, within ABZR87_RS19640at 781.113 kb on + strand, within ABZR87_RS19640at 781.113 kb on + strand, within ABZR87_RS19640at 781.113 kb on + strand, within ABZR87_RS19640at 781.114 kb on - strand, within ABZR87_RS19640at 781.193 kb on + strand, within ABZR87_RS19640at 781.193 kb on + strand, within ABZR87_RS19640at 781.193 kb on + strand, within ABZR87_RS19640at 781.193 kb on + strand, within ABZR87_RS19640at 781.193 kb on + strand, within ABZR87_RS19640at 781.193 kb on + strand, within ABZR87_RS19640at 781.193 kb on + strand, within ABZR87_RS19640at 781.193 kb on + strand, within ABZR87_RS19640at 781.194 kb on - strand, within ABZR87_RS19640at 781.194 kb on - strand, within ABZR87_RS19640at 781.194 kb on - strand, within ABZR87_RS19640at 781.194 kb on - strand, within ABZR87_RS19640at 781.232 kb on + strand, within ABZR87_RS19640at 781.233 kb on - strand, within ABZR87_RS19640at 781.233 kb on - strand, within ABZR87_RS19640at 781.235 kb on + strand, within ABZR87_RS19640at 781.235 kb on + strand, within ABZR87_RS19640at 781.235 kb on + strand, within ABZR87_RS19640at 781.236 kb on - strand, within ABZR87_RS19640at 781.448 kb on + strand, within ABZR87_RS19640at 781.448 kb on + strand, within ABZR87_RS19640at 781.449 kb on - strand, within ABZR87_RS19640at 781.449 kb on - strand, within ABZR87_RS19640at 781.451 kb on + strand, within ABZR87_RS19640at 781.452 kb on - strand, within ABZR87_RS19640at 781.452 kb on - strand, within ABZR87_RS19640at 781.452 kb on - strand, within ABZR87_RS19640at 781.452 kb on - strand, within ABZR87_RS19640at 781.452 kb on - strand, within ABZR87_RS19640at 781.713 kb on + strand, within ABZR87_RS19640at 781.713 kb on + strand, within ABZR87_RS19640at 781.714 kb on - strand, within ABZR87_RS19640at 781.714 kb on - strand, within ABZR87_RS19640at 781.714 kb on - strand, within ABZR87_RS19640at 781.796 kb on + strand, within ABZR87_RS19640at 781.797 kb on - strand, within ABZR87_RS19640at 781.872 kb on + strandat 781.873 kb on - strandat 781.873 kb on - strandat 781.939 kb on + strandat 781.940 kb on - strandat 781.940 kb on - strandat 781.956 kb on + strandat 781.956 kb on + strandat 781.956 kb on + strandat 781.957 kb on - strandat 781.957 kb on - strandat 781.957 kb on - strandat 781.957 kb on - strandat 781.957 kb on - strandat 781.957 kb on - strandat 781.957 kb on - strandat 781.984 kb on + strandat 781.984 kb on + strandat 781.985 kb on - strandat 782.114 kb on + strand, within ABZR87_RS19645at 782.243 kb on + strand, within ABZR87_RS19645at 782.243 kb on + strand, within ABZR87_RS19645at 782.256 kb on + strand, within ABZR87_RS19645at 782.305 kb on - strand, within ABZR87_RS19645at 782.305 kb on - strand, within ABZR87_RS19645at 782.308 kb on + strand, within ABZR87_RS19645at 782.308 kb on + strand, within ABZR87_RS19645at 782.309 kb on - strand, within ABZR87_RS19645at 782.309 kb on - strand, within ABZR87_RS19645at 782.356 kb on + strand, within ABZR87_RS19645at 782.356 kb on + strand, within ABZR87_RS19645at 782.356 kb on + strand, within ABZR87_RS19645at 782.356 kb on + strand, within ABZR87_RS19645at 782.357 kb on - strand, within ABZR87_RS19645at 782.357 kb on - strand, within ABZR87_RS19645at 782.357 kb on - strand, within ABZR87_RS19645at 782.357 kb on - strand, within ABZR87_RS19645at 782.357 kb on - strand, within ABZR87_RS19645at 782.357 kb on - strand, within ABZR87_RS19645at 782.470 kb on + strand, within ABZR87_RS19645at 782.471 kb on - strand, within ABZR87_RS19645at 782.471 kb on - strand, within ABZR87_RS19645at 782.781 kb on - strandat 782.823 kb on + strandat 782.835 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB
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779,977 + ABZR87_RS19635 0.66 -0.8
779,977 + ABZR87_RS19635 0.66 -0.8
779,977 + ABZR87_RS19635 0.66 +1.0
779,978 - ABZR87_RS19635 0.66 +0.2
779,978 - ABZR87_RS19635 0.66 -1.7
779,978 - ABZR87_RS19635 0.66 +1.1
780,062 + ABZR87_RS19635 0.70 -2.2
780,062 + ABZR87_RS19635 0.70 +2.3
780,196 + ABZR87_RS19635 0.77 -0.1
780,196 + ABZR87_RS19635 0.77 -0.0
780,197 - ABZR87_RS19635 0.77 -1.3
780,359 - ABZR87_RS19635 0.84 +1.1
780,359 - ABZR87_RS19635 0.84 -0.8
780,366 + ABZR87_RS19635 0.85 -0.1
780,366 + ABZR87_RS19635 0.85 +0.6
780,366 + ABZR87_RS19635 0.85 -0.5
780,367 - ABZR87_RS19635 0.85 -0.7
780,367 - ABZR87_RS19635 0.85 +0.4
780,367 - ABZR87_RS19635 0.85 +1.2
780,367 - ABZR87_RS19635 0.85 -1.0
780,367 - ABZR87_RS19635 0.85 +3.3
780,367 - ABZR87_RS19635 0.85 +2.0
780,367 - ABZR87_RS19635 0.85 +1.3
780,484 + +0.2
780,529 + +0.2
780,530 - +1.2
780,589 + +0.3
780,589 + -1.5
780,589 + +0.5
780,589 + -0.3
780,589 + +0.3
780,589 + +0.7
780,590 - +3.2
780,590 - -0.4
780,590 - -0.9
780,590 - +1.3
780,590 - +0.6
780,667 - -0.4
780,667 - -2.0
780,667 - -1.9
780,667 - +0.4
780,718 + -0.9
780,718 + +0.2
780,719 - +0.2
780,899 + ABZR87_RS19640 0.16 +0.9
780,899 + ABZR87_RS19640 0.16 +1.1
780,899 + ABZR87_RS19640 0.16 -0.5
780,899 + ABZR87_RS19640 0.16 -0.9
780,900 - ABZR87_RS19640 0.16 -2.7
780,920 + ABZR87_RS19640 0.18 -1.0
780,956 + ABZR87_RS19640 0.21 +1.3
780,957 - ABZR87_RS19640 0.21 +0.3
780,957 - ABZR87_RS19640 0.21 -1.1
780,957 - ABZR87_RS19640 0.21 -0.6
781,062 + ABZR87_RS19640 0.29 +0.6
781,063 - ABZR87_RS19640 0.29 +0.8
781,073 + ABZR87_RS19640 0.30 -1.7
781,074 - ABZR87_RS19640 0.30 -0.2
781,113 + ABZR87_RS19640 0.33 +0.6
781,113 + ABZR87_RS19640 0.33 -0.9
781,113 + ABZR87_RS19640 0.33 -0.9
781,114 - ABZR87_RS19640 0.33 +0.6
781,193 + ABZR87_RS19640 0.40 -1.9
781,193 + ABZR87_RS19640 0.40 -1.4
781,193 + ABZR87_RS19640 0.40 -0.3
781,193 + ABZR87_RS19640 0.40 -0.1
781,193 + ABZR87_RS19640 0.40 -0.1
781,193 + ABZR87_RS19640 0.40 -0.6
781,193 + ABZR87_RS19640 0.40 -0.8
781,193 + ABZR87_RS19640 0.40 +0.1
781,194 - ABZR87_RS19640 0.40 -0.8
781,194 - ABZR87_RS19640 0.40 -0.9
781,194 - ABZR87_RS19640 0.40 +0.1
781,194 - ABZR87_RS19640 0.40 +0.9
781,232 + ABZR87_RS19640 0.43 -1.4
781,233 - ABZR87_RS19640 0.43 +0.5
781,233 - ABZR87_RS19640 0.43 -1.3
781,235 + ABZR87_RS19640 0.43 -1.3
781,235 + ABZR87_RS19640 0.43 -0.2
781,235 + ABZR87_RS19640 0.43 +0.6
781,236 - ABZR87_RS19640 0.43 +1.3
781,448 + ABZR87_RS19640 0.60 +0.6
781,448 + ABZR87_RS19640 0.60 +1.9
781,449 - ABZR87_RS19640 0.60 +0.6
781,449 - ABZR87_RS19640 0.60 -1.5
781,451 + ABZR87_RS19640 0.60 -0.8
781,452 - ABZR87_RS19640 0.60 +2.9
781,452 - ABZR87_RS19640 0.60 -0.2
781,452 - ABZR87_RS19640 0.60 -0.7
781,452 - ABZR87_RS19640 0.60 -1.0
781,452 - ABZR87_RS19640 0.60 +0.9
781,713 + ABZR87_RS19640 0.81 +0.6
781,713 + ABZR87_RS19640 0.81 -0.3
781,714 - ABZR87_RS19640 0.81 -0.0
781,714 - ABZR87_RS19640 0.81 +0.2
781,714 - ABZR87_RS19640 0.81 -0.1
781,796 + ABZR87_RS19640 0.87 -1.0
781,797 - ABZR87_RS19640 0.87 +1.9
781,872 + +0.0
781,873 - -0.2
781,873 - -0.9
781,939 + -1.4
781,940 - -0.3
781,940 - +1.6
781,956 + -1.5
781,956 + -0.7
781,956 + -0.1
781,957 - -1.5
781,957 - -1.7
781,957 - -2.4
781,957 - -2.0
781,957 - -0.1
781,957 - +0.5
781,957 - -1.4
781,984 + +0.5
781,984 + +0.1
781,985 - +1.1
782,114 + ABZR87_RS19645 0.16 +0.8
782,243 + ABZR87_RS19645 0.32 -2.0
782,243 + ABZR87_RS19645 0.32 +0.3
782,256 + ABZR87_RS19645 0.34 -1.0
782,305 - ABZR87_RS19645 0.40 -0.9
782,305 - ABZR87_RS19645 0.40 +0.2
782,308 + ABZR87_RS19645 0.41 -0.2
782,308 + ABZR87_RS19645 0.41 +0.1
782,309 - ABZR87_RS19645 0.41 -0.8
782,309 - ABZR87_RS19645 0.41 -2.1
782,356 + ABZR87_RS19645 0.47 -0.1
782,356 + ABZR87_RS19645 0.47 -0.5
782,356 + ABZR87_RS19645 0.47 -0.1
782,356 + ABZR87_RS19645 0.47 -0.7
782,357 - ABZR87_RS19645 0.47 -0.0
782,357 - ABZR87_RS19645 0.47 +0.3
782,357 - ABZR87_RS19645 0.47 -0.7
782,357 - ABZR87_RS19645 0.47 -1.7
782,357 - ABZR87_RS19645 0.47 -2.9
782,357 - ABZR87_RS19645 0.47 -0.2
782,470 + ABZR87_RS19645 0.61 +0.7
782,471 - ABZR87_RS19645 0.61 +1.6
782,471 - ABZR87_RS19645 0.61 -1.3
782,781 - +0.4
782,823 + -0.9
782,835 + -1.3

Or see this region's nucleotide sequence