Experiment: rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19355 and ABZR87_RS19360 are separated by 556 nucleotides ABZR87_RS19360 and ABZR87_RS19365 are separated by 21 nucleotides
ABZR87_RS19355: ABZR87_RS19355 - MFS transporter, at 708,053 to 709,354
_RS19355
ABZR87_RS19360: ABZR87_RS19360 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 709,911 to 711,062
_RS19360
ABZR87_RS19365: ABZR87_RS19365 - glycosyltransferase, at 711,084 to 712,409
_RS19365
Position (kb) 709
710
711
712 Strain fitness (log2 ratio) -2
-1
0
1
2 at 708.935 kb on + strand, within ABZR87_RS19355 at 708.936 kb on - strand, within ABZR87_RS19355 at 708.936 kb on - strand, within ABZR87_RS19355 at 708.936 kb on - strand, within ABZR87_RS19355 at 708.936 kb on - strand, within ABZR87_RS19355 at 708.936 kb on - strand, within ABZR87_RS19355 at 709.035 kb on - strand, within ABZR87_RS19355 at 709.035 kb on - strand, within ABZR87_RS19355 at 709.181 kb on + strand, within ABZR87_RS19355 at 709.181 kb on + strand, within ABZR87_RS19355 at 709.181 kb on + strand, within ABZR87_RS19355 at 709.349 kb on - strand at 709.352 kb on + strand at 709.374 kb on - strand at 709.433 kb on + strand at 709.434 kb on - strand at 709.434 kb on - strand at 709.886 kb on + strand at 709.887 kb on - strand at 709.903 kb on - strand at 710.076 kb on + strand, within ABZR87_RS19360 at 710.076 kb on + strand, within ABZR87_RS19360 at 710.076 kb on + strand, within ABZR87_RS19360 at 710.077 kb on - strand, within ABZR87_RS19360 at 710.077 kb on - strand, within ABZR87_RS19360 at 710.077 kb on - strand, within ABZR87_RS19360 at 710.185 kb on + strand, within ABZR87_RS19360 at 710.631 kb on + strand, within ABZR87_RS19360 at 710.722 kb on - strand, within ABZR87_RS19360 at 710.722 kb on - strand, within ABZR87_RS19360 at 710.923 kb on - strand, within ABZR87_RS19360 at 711.165 kb on + strand at 711.211 kb on - strand at 711.522 kb on + strand, within ABZR87_RS19365 at 711.523 kb on - strand, within ABZR87_RS19365 at 711.523 kb on - strand, within ABZR87_RS19365 at 711.523 kb on - strand, within ABZR87_RS19365 at 711.666 kb on + strand, within ABZR87_RS19365 at 711.714 kb on + strand, within ABZR87_RS19365 at 711.714 kb on + strand, within ABZR87_RS19365 at 711.840 kb on + strand, within ABZR87_RS19365 at 711.861 kb on + strand, within ABZR87_RS19365
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB remove 708,935 + ABZR87_RS19355 0.68 +1.6 708,936 - ABZR87_RS19355 0.68 +0.7 708,936 - ABZR87_RS19355 0.68 -0.6 708,936 - ABZR87_RS19355 0.68 -1.6 708,936 - ABZR87_RS19355 0.68 -2.2 708,936 - ABZR87_RS19355 0.68 -0.5 709,035 - ABZR87_RS19355 0.75 -2.2 709,035 - ABZR87_RS19355 0.75 +0.8 709,181 + ABZR87_RS19355 0.87 +0.4 709,181 + ABZR87_RS19355 0.87 +0.2 709,181 + ABZR87_RS19355 0.87 -1.5 709,349 - +0.1 709,352 + +1.0 709,374 - -0.4 709,433 + -0.5 709,434 - +0.9 709,434 - -0.8 709,886 + +2.4 709,887 - -0.3 709,903 - +0.1 710,076 + ABZR87_RS19360 0.14 -0.3 710,076 + ABZR87_RS19360 0.14 -0.2 710,076 + ABZR87_RS19360 0.14 +0.4 710,077 - ABZR87_RS19360 0.14 -0.8 710,077 - ABZR87_RS19360 0.14 -1.3 710,077 - ABZR87_RS19360 0.14 -0.6 710,185 + ABZR87_RS19360 0.24 +0.3 710,631 + ABZR87_RS19360 0.62 -0.1 710,722 - ABZR87_RS19360 0.70 -1.0 710,722 - ABZR87_RS19360 0.70 +0.5 710,923 - ABZR87_RS19360 0.88 -1.0 711,165 + -0.4 711,211 - -0.1 711,522 + ABZR87_RS19365 0.33 +0.3 711,523 - ABZR87_RS19365 0.33 +0.6 711,523 - ABZR87_RS19365 0.33 -1.9 711,523 - ABZR87_RS19365 0.33 -0.9 711,666 + ABZR87_RS19365 0.44 +0.4 711,714 + ABZR87_RS19365 0.48 +2.0 711,714 + ABZR87_RS19365 0.48 +0.3 711,840 + ABZR87_RS19365 0.57 -0.5 711,861 + ABZR87_RS19365 0.59 -0.6
Or see this region's nucleotide sequence