Experiment: rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19155 and ABZR87_RS19160 are separated by 274 nucleotides ABZR87_RS19160 and ABZR87_RS19165 are separated by 123 nucleotides
ABZR87_RS19155: ABZR87_RS19155 - acid phosphatase, at 659,503 to 661,665
_RS19155
ABZR87_RS19160: ABZR87_RS19160 - cytochrome-c peroxidase, at 661,940 to 663,346
_RS19160
ABZR87_RS19165: ABZR87_RS19165 - TerC family protein, at 663,470 to 665,050
_RS19165
Position (kb) 661
662
663
664 Strain fitness (log2 ratio) -2
-1
0
1
2 at 660.989 kb on + strand, within ABZR87_RS19155 at 660.990 kb on - strand, within ABZR87_RS19155 at 661.019 kb on + strand, within ABZR87_RS19155 at 661.448 kb on + strand, within ABZR87_RS19155 at 661.518 kb on + strand at 661.542 kb on - strand at 661.783 kb on + strand at 661.783 kb on + strand at 661.784 kb on - strand at 661.904 kb on + strand at 661.904 kb on + strand at 661.904 kb on + strand at 661.904 kb on + strand at 661.904 kb on + strand at 661.905 kb on - strand at 661.905 kb on - strand at 661.905 kb on - strand at 662.144 kb on + strand, within ABZR87_RS19160 at 662.159 kb on + strand, within ABZR87_RS19160 at 662.159 kb on + strand, within ABZR87_RS19160 at 662.160 kb on - strand, within ABZR87_RS19160 at 662.160 kb on - strand, within ABZR87_RS19160 at 662.291 kb on + strand, within ABZR87_RS19160 at 662.291 kb on + strand, within ABZR87_RS19160 at 662.292 kb on - strand, within ABZR87_RS19160 at 662.375 kb on + strand, within ABZR87_RS19160 at 662.424 kb on - strand, within ABZR87_RS19160 at 662.693 kb on + strand, within ABZR87_RS19160 at 662.693 kb on + strand, within ABZR87_RS19160 at 662.693 kb on + strand, within ABZR87_RS19160 at 662.700 kb on - strand, within ABZR87_RS19160 at 662.867 kb on - strand, within ABZR87_RS19160 at 662.867 kb on - strand, within ABZR87_RS19160 at 662.979 kb on - strand, within ABZR87_RS19160 at 663.080 kb on + strand, within ABZR87_RS19160 at 663.081 kb on - strand, within ABZR87_RS19160 at 663.081 kb on - strand, within ABZR87_RS19160 at 663.168 kb on - strand, within ABZR87_RS19160 at 663.344 kb on + strand at 663.345 kb on - strand at 663.345 kb on - strand at 663.459 kb on + strand at 663.460 kb on - strand at 663.460 kb on - strand at 663.460 kb on - strand at 663.469 kb on + strand at 664.094 kb on - strand, within ABZR87_RS19165 at 664.106 kb on + strand, within ABZR87_RS19165 at 664.107 kb on - strand, within ABZR87_RS19165 at 664.107 kb on - strand, within ABZR87_RS19165 at 664.112 kb on + strand, within ABZR87_RS19165 at 664.113 kb on - strand, within ABZR87_RS19165 at 664.176 kb on + strand, within ABZR87_RS19165 at 664.176 kb on + strand, within ABZR87_RS19165 at 664.176 kb on + strand, within ABZR87_RS19165 at 664.176 kb on + strand, within ABZR87_RS19165 at 664.177 kb on - strand, within ABZR87_RS19165 at 664.177 kb on - strand, within ABZR87_RS19165 at 664.177 kb on - strand, within ABZR87_RS19165 at 664.181 kb on + strand, within ABZR87_RS19165
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB remove 660,989 + ABZR87_RS19155 0.69 -0.4 660,990 - ABZR87_RS19155 0.69 -0.5 661,019 + ABZR87_RS19155 0.70 +1.0 661,448 + ABZR87_RS19155 0.90 -1.2 661,518 + +0.9 661,542 - +0.9 661,783 + +1.0 661,783 + -0.4 661,784 - -0.4 661,904 + -0.1 661,904 + +0.1 661,904 + -0.0 661,904 + +0.4 661,904 + +1.2 661,905 - +2.4 661,905 - -0.5 661,905 - -0.1 662,144 + ABZR87_RS19160 0.14 -1.0 662,159 + ABZR87_RS19160 0.16 -0.2 662,159 + ABZR87_RS19160 0.16 +1.4 662,160 - ABZR87_RS19160 0.16 +1.7 662,160 - ABZR87_RS19160 0.16 +0.2 662,291 + ABZR87_RS19160 0.25 -0.1 662,291 + ABZR87_RS19160 0.25 -0.0 662,292 - ABZR87_RS19160 0.25 -1.1 662,375 + ABZR87_RS19160 0.31 -0.3 662,424 - ABZR87_RS19160 0.34 -1.2 662,693 + ABZR87_RS19160 0.54 -0.3 662,693 + ABZR87_RS19160 0.54 -0.1 662,693 + ABZR87_RS19160 0.54 +0.2 662,700 - ABZR87_RS19160 0.54 -0.7 662,867 - ABZR87_RS19160 0.66 -1.8 662,867 - ABZR87_RS19160 0.66 -0.3 662,979 - ABZR87_RS19160 0.74 -0.1 663,080 + ABZR87_RS19160 0.81 -0.3 663,081 - ABZR87_RS19160 0.81 +1.2 663,081 - ABZR87_RS19160 0.81 -0.1 663,168 - ABZR87_RS19160 0.87 -0.8 663,344 + -0.7 663,345 - +0.8 663,345 - -0.9 663,459 + +0.8 663,460 - -1.9 663,460 - -1.4 663,460 - -1.6 663,469 + +0.3 664,094 - ABZR87_RS19165 0.39 -1.2 664,106 + ABZR87_RS19165 0.40 -0.1 664,107 - ABZR87_RS19165 0.40 -0.6 664,107 - ABZR87_RS19165 0.40 +1.2 664,112 + ABZR87_RS19165 0.41 -0.9 664,113 - ABZR87_RS19165 0.41 +1.3 664,176 + ABZR87_RS19165 0.45 -0.2 664,176 + ABZR87_RS19165 0.45 -0.9 664,176 + ABZR87_RS19165 0.45 -0.7 664,176 + ABZR87_RS19165 0.45 +0.1 664,177 - ABZR87_RS19165 0.45 +1.8 664,177 - ABZR87_RS19165 0.45 -0.4 664,177 - ABZR87_RS19165 0.45 +0.1 664,181 + ABZR87_RS19165 0.45 -0.0
Or see this region's nucleotide sequence