Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19140

Experiment: rhizosphere sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19135 and ABZR87_RS19140 are separated by 152 nucleotidesABZR87_RS19140 and ABZR87_RS19145 are separated by 16 nucleotidesABZR87_RS19145 and ABZR87_RS19150 are separated by 353 nucleotidesABZR87_RS19150 and ABZR87_RS19155 are separated by 65 nucleotides ABZR87_RS19135: ABZR87_RS19135 - MFS transporter, at 656,730 to 658,028 _RS19135 ABZR87_RS19140: ABZR87_RS19140 - DUF3175 domain-containing protein, at 658,181 to 658,537 _RS19140 ABZR87_RS19145: ABZR87_RS19145 - hypothetical protein, at 658,554 to 658,835 _RS19145 ABZR87_RS19150: ABZR87_RS19150 - dodecin, at 659,189 to 659,437 _RS19150 ABZR87_RS19155: ABZR87_RS19155 - acid phosphatase, at 659,503 to 661,665 _RS19155 Position (kb) 658 659Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 657.256 kb on + strand, within ABZR87_RS19135at 657.429 kb on + strand, within ABZR87_RS19135at 657.429 kb on + strand, within ABZR87_RS19135at 657.430 kb on - strand, within ABZR87_RS19135at 657.430 kb on - strand, within ABZR87_RS19135at 657.430 kb on - strand, within ABZR87_RS19135at 657.430 kb on - strand, within ABZR87_RS19135at 657.444 kb on - strand, within ABZR87_RS19135at 657.466 kb on + strand, within ABZR87_RS19135at 657.466 kb on + strand, within ABZR87_RS19135at 657.466 kb on + strand, within ABZR87_RS19135at 657.467 kb on - strand, within ABZR87_RS19135at 657.467 kb on - strand, within ABZR87_RS19135at 657.467 kb on - strand, within ABZR87_RS19135at 657.491 kb on - strand, within ABZR87_RS19135at 657.491 kb on - strand, within ABZR87_RS19135at 657.491 kb on - strand, within ABZR87_RS19135at 657.744 kb on + strand, within ABZR87_RS19135at 657.745 kb on - strand, within ABZR87_RS19135at 657.844 kb on + strand, within ABZR87_RS19135at 657.844 kb on + strand, within ABZR87_RS19135at 657.844 kb on + strand, within ABZR87_RS19135at 657.844 kb on + strand, within ABZR87_RS19135at 657.844 kb on + strand, within ABZR87_RS19135at 657.844 kb on + strand, within ABZR87_RS19135at 657.844 kb on + strand, within ABZR87_RS19135at 657.845 kb on - strand, within ABZR87_RS19135at 657.845 kb on - strand, within ABZR87_RS19135at 657.845 kb on - strand, within ABZR87_RS19135at 657.845 kb on - strand, within ABZR87_RS19135at 657.865 kb on + strand, within ABZR87_RS19135at 657.865 kb on + strand, within ABZR87_RS19135at 657.865 kb on + strand, within ABZR87_RS19135at 657.865 kb on + strand, within ABZR87_RS19135at 657.865 kb on + strand, within ABZR87_RS19135at 657.865 kb on + strand, within ABZR87_RS19135at 657.866 kb on - strand, within ABZR87_RS19135at 657.866 kb on - strand, within ABZR87_RS19135at 658.118 kb on + strandat 658.157 kb on + strandat 658.157 kb on + strandat 658.165 kb on + strandat 658.165 kb on + strandat 658.166 kb on - strandat 658.415 kb on + strand, within ABZR87_RS19140at 658.415 kb on + strand, within ABZR87_RS19140at 658.415 kb on + strand, within ABZR87_RS19140at 658.415 kb on + strand, within ABZR87_RS19140at 658.415 kb on + strand, within ABZR87_RS19140at 658.415 kb on + strand, within ABZR87_RS19140at 658.415 kb on + strand, within ABZR87_RS19140at 658.415 kb on + strand, within ABZR87_RS19140at 658.415 kb on + strand, within ABZR87_RS19140at 658.415 kb on + strand, within ABZR87_RS19140at 658.416 kb on - strand, within ABZR87_RS19140at 658.416 kb on - strand, within ABZR87_RS19140at 658.416 kb on - strand, within ABZR87_RS19140at 658.416 kb on - strand, within ABZR87_RS19140at 658.416 kb on - strand, within ABZR87_RS19140at 658.416 kb on - strand, within ABZR87_RS19140at 658.416 kb on - strand, within ABZR87_RS19140at 658.417 kb on + strand, within ABZR87_RS19140at 658.417 kb on + strand, within ABZR87_RS19140at 658.417 kb on + strand, within ABZR87_RS19140at 658.418 kb on - strand, within ABZR87_RS19140at 658.418 kb on - strand, within ABZR87_RS19140at 658.418 kb on - strand, within ABZR87_RS19140at 658.600 kb on + strand, within ABZR87_RS19145at 658.600 kb on + strand, within ABZR87_RS19145at 658.600 kb on + strand, within ABZR87_RS19145at 658.600 kb on + strand, within ABZR87_RS19145at 658.601 kb on - strand, within ABZR87_RS19145at 658.601 kb on - strand, within ABZR87_RS19145at 658.601 kb on - strand, within ABZR87_RS19145at 658.601 kb on - strand, within ABZR87_RS19145at 658.601 kb on - strand, within ABZR87_RS19145at 658.627 kb on + strand, within ABZR87_RS19145at 658.627 kb on + strand, within ABZR87_RS19145at 658.627 kb on + strand, within ABZR87_RS19145at 658.628 kb on - strand, within ABZR87_RS19145at 658.628 kb on - strand, within ABZR87_RS19145at 658.628 kb on - strand, within ABZR87_RS19145at 658.628 kb on - strand, within ABZR87_RS19145at 658.628 kb on - strand, within ABZR87_RS19145at 658.628 kb on - strand, within ABZR87_RS19145at 658.631 kb on + strand, within ABZR87_RS19145at 658.631 kb on + strand, within ABZR87_RS19145at 658.631 kb on + strand, within ABZR87_RS19145at 658.631 kb on + strand, within ABZR87_RS19145at 658.631 kb on + strand, within ABZR87_RS19145at 658.631 kb on + strand, within ABZR87_RS19145at 658.632 kb on - strand, within ABZR87_RS19145at 658.632 kb on - strand, within ABZR87_RS19145at 658.651 kb on + strand, within ABZR87_RS19145at 658.684 kb on + strand, within ABZR87_RS19145at 658.685 kb on - strand, within ABZR87_RS19145at 658.685 kb on - strand, within ABZR87_RS19145at 658.802 kb on - strand, within ABZR87_RS19145at 658.914 kb on + strandat 658.915 kb on - strandat 659.095 kb on + strandat 659.096 kb on - strandat 659.096 kb on - strandat 659.096 kb on - strandat 659.188 kb on + strandat 659.200 kb on + strandat 659.200 kb on + strandat 659.200 kb on + strandat 659.200 kb on + strandat 659.201 kb on - strandat 659.201 kb on - strandat 659.201 kb on - strandat 659.204 kb on + strandat 659.204 kb on + strandat 659.204 kb on + strandat 659.204 kb on + strandat 659.205 kb on - strandat 659.205 kb on - strandat 659.205 kb on - strandat 659.435 kb on + strandat 659.436 kb on - strandat 659.504 kb on + strandat 659.517 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB
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657,256 + ABZR87_RS19135 0.40 -0.9
657,429 + ABZR87_RS19135 0.54 +1.1
657,429 + ABZR87_RS19135 0.54 +0.4
657,430 - ABZR87_RS19135 0.54 -0.2
657,430 - ABZR87_RS19135 0.54 -0.1
657,430 - ABZR87_RS19135 0.54 -1.9
657,430 - ABZR87_RS19135 0.54 -1.1
657,444 - ABZR87_RS19135 0.55 +0.0
657,466 + ABZR87_RS19135 0.57 -0.2
657,466 + ABZR87_RS19135 0.57 -1.0
657,466 + ABZR87_RS19135 0.57 +0.7
657,467 - ABZR87_RS19135 0.57 -0.2
657,467 - ABZR87_RS19135 0.57 -0.2
657,467 - ABZR87_RS19135 0.57 -1.0
657,491 - ABZR87_RS19135 0.59 +1.8
657,491 - ABZR87_RS19135 0.59 +0.8
657,491 - ABZR87_RS19135 0.59 -0.1
657,744 + ABZR87_RS19135 0.78 -1.0
657,745 - ABZR87_RS19135 0.78 +0.5
657,844 + ABZR87_RS19135 0.86 -1.4
657,844 + ABZR87_RS19135 0.86 +0.3
657,844 + ABZR87_RS19135 0.86 -0.2
657,844 + ABZR87_RS19135 0.86 +1.8
657,844 + ABZR87_RS19135 0.86 -1.7
657,844 + ABZR87_RS19135 0.86 -1.1
657,844 + ABZR87_RS19135 0.86 -1.8
657,845 - ABZR87_RS19135 0.86 -0.3
657,845 - ABZR87_RS19135 0.86 -0.5
657,845 - ABZR87_RS19135 0.86 +0.0
657,845 - ABZR87_RS19135 0.86 -0.3
657,865 + ABZR87_RS19135 0.87 +1.0
657,865 + ABZR87_RS19135 0.87 -0.9
657,865 + ABZR87_RS19135 0.87 -1.9
657,865 + ABZR87_RS19135 0.87 +0.3
657,865 + ABZR87_RS19135 0.87 -2.0
657,865 + ABZR87_RS19135 0.87 -0.4
657,866 - ABZR87_RS19135 0.87 -0.3
657,866 - ABZR87_RS19135 0.87 -0.2
658,118 + +0.5
658,157 + -0.2
658,157 + +0.0
658,165 + +0.1
658,165 + -0.8
658,166 - +0.1
658,415 + ABZR87_RS19140 0.66 -1.9
658,415 + ABZR87_RS19140 0.66 -1.3
658,415 + ABZR87_RS19140 0.66 -0.7
658,415 + ABZR87_RS19140 0.66 +0.9
658,415 + ABZR87_RS19140 0.66 +1.3
658,415 + ABZR87_RS19140 0.66 +5.6
658,415 + ABZR87_RS19140 0.66 -0.1
658,415 + ABZR87_RS19140 0.66 +1.2
658,415 + ABZR87_RS19140 0.66 +1.2
658,415 + ABZR87_RS19140 0.66 +0.4
658,416 - ABZR87_RS19140 0.66 -0.8
658,416 - ABZR87_RS19140 0.66 -0.9
658,416 - ABZR87_RS19140 0.66 -0.8
658,416 - ABZR87_RS19140 0.66 +0.8
658,416 - ABZR87_RS19140 0.66 -1.1
658,416 - ABZR87_RS19140 0.66 +0.7
658,416 - ABZR87_RS19140 0.66 +0.2
658,417 + ABZR87_RS19140 0.66 -1.0
658,417 + ABZR87_RS19140 0.66 -0.2
658,417 + ABZR87_RS19140 0.66 +0.3
658,418 - ABZR87_RS19140 0.66 -1.7
658,418 - ABZR87_RS19140 0.66 -0.0
658,418 - ABZR87_RS19140 0.66 -1.7
658,600 + ABZR87_RS19145 0.16 +0.8
658,600 + ABZR87_RS19145 0.16 +0.4
658,600 + ABZR87_RS19145 0.16 +0.5
658,600 + ABZR87_RS19145 0.16 -0.0
658,601 - ABZR87_RS19145 0.17 +0.4
658,601 - ABZR87_RS19145 0.17 +0.2
658,601 - ABZR87_RS19145 0.17 -1.8
658,601 - ABZR87_RS19145 0.17 +0.7
658,601 - ABZR87_RS19145 0.17 +0.5
658,627 + ABZR87_RS19145 0.26 +0.8
658,627 + ABZR87_RS19145 0.26 +0.3
658,627 + ABZR87_RS19145 0.26 -0.2
658,628 - ABZR87_RS19145 0.26 -0.5
658,628 - ABZR87_RS19145 0.26 +0.5
658,628 - ABZR87_RS19145 0.26 -0.4
658,628 - ABZR87_RS19145 0.26 -0.6
658,628 - ABZR87_RS19145 0.26 -0.2
658,628 - ABZR87_RS19145 0.26 +0.3
658,631 + ABZR87_RS19145 0.27 +0.0
658,631 + ABZR87_RS19145 0.27 +2.5
658,631 + ABZR87_RS19145 0.27 -1.0
658,631 + ABZR87_RS19145 0.27 +0.0
658,631 + ABZR87_RS19145 0.27 +0.2
658,631 + ABZR87_RS19145 0.27 -0.4
658,632 - ABZR87_RS19145 0.28 -0.2
658,632 - ABZR87_RS19145 0.28 +0.3
658,651 + ABZR87_RS19145 0.34 -1.7
658,684 + ABZR87_RS19145 0.46 +0.7
658,685 - ABZR87_RS19145 0.46 +1.1
658,685 - ABZR87_RS19145 0.46 -1.8
658,802 - ABZR87_RS19145 0.88 -0.2
658,914 + +1.4
658,915 - +1.0
659,095 + -0.5
659,096 - +1.8
659,096 - +0.1
659,096 - -1.1
659,188 + -0.4
659,200 + -1.5
659,200 + -0.6
659,200 + -0.1
659,200 + +1.4
659,201 - +0.0
659,201 - -0.0
659,201 - +0.2
659,204 + -1.0
659,204 + +2.5
659,204 + -0.5
659,204 + +0.6
659,205 - -0.7
659,205 - +0.1
659,205 - +0.5
659,435 + +0.4
659,436 - +0.4
659,504 + -1.5
659,517 + +0.6

Or see this region's nucleotide sequence