Experiment: rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17525 and ABZR87_RS17530 are separated by 170 nucleotides ABZR87_RS17530 and ABZR87_RS17535 overlap by 1 nucleotides ABZR87_RS17535 and ABZR87_RS17540 are separated by 5 nucleotides
ABZR87_RS17525: ABZR87_RS17525 - helix-turn-helix domain-containing protein, at 294,251 to 294,961
_RS17525
ABZR87_RS17530: ABZR87_RS17530 - diguanylate cyclase, at 295,132 to 295,830
_RS17530
ABZR87_RS17535: ABZR87_RS17535 - NAD(P)-dependent oxidoreductase, at 295,830 to 296,780
_RS17535
ABZR87_RS17540: ABZR87_RS17540 - SMP-30/gluconolactonase/LRE family protein, at 296,786 to 297,736
_RS17540
Position (kb) 295
296
297 Strain fitness (log2 ratio) -2
-1
0
1 at 294.835 kb on - strand, within ABZR87_RS17525 at 294.835 kb on - strand, within ABZR87_RS17525 at 295.038 kb on + strand at 295.064 kb on + strand at 295.064 kb on + strand at 295.066 kb on + strand at 295.761 kb on + strand at 295.828 kb on + strand at 295.828 kb on + strand at 295.828 kb on + strand at 295.829 kb on - strand at 295.829 kb on - strand at 295.829 kb on - strand at 295.829 kb on - strand at 296.002 kb on - strand, within ABZR87_RS17535 at 296.342 kb on + strand, within ABZR87_RS17535 at 296.367 kb on + strand, within ABZR87_RS17535 at 296.368 kb on - strand, within ABZR87_RS17535 at 296.368 kb on - strand, within ABZR87_RS17535 at 296.419 kb on - strand, within ABZR87_RS17535 at 296.655 kb on - strand, within ABZR87_RS17535 at 296.707 kb on - strand at 296.707 kb on - strand at 296.966 kb on + strand, within ABZR87_RS17540 at 296.966 kb on + strand, within ABZR87_RS17540 at 296.966 kb on + strand, within ABZR87_RS17540 at 296.967 kb on - strand, within ABZR87_RS17540 at 296.967 kb on - strand, within ABZR87_RS17540 at 296.967 kb on - strand, within ABZR87_RS17540 at 296.967 kb on - strand, within ABZR87_RS17540 at 297.038 kb on + strand, within ABZR87_RS17540 at 297.150 kb on - strand, within ABZR87_RS17540 at 297.150 kb on - strand, within ABZR87_RS17540 at 297.221 kb on + strand, within ABZR87_RS17540 at 297.222 kb on - strand, within ABZR87_RS17540 at 297.222 kb on - strand, within ABZR87_RS17540 at 297.222 kb on - strand, within ABZR87_RS17540 at 297.365 kb on + strand, within ABZR87_RS17540 at 297.366 kb on - strand, within ABZR87_RS17540 at 297.366 kb on - strand, within ABZR87_RS17540 at 297.449 kb on - strand, within ABZR87_RS17540 at 297.455 kb on + strand, within ABZR87_RS17540 at 297.540 kb on + strand, within ABZR87_RS17540 at 297.541 kb on - strand, within ABZR87_RS17540 at 297.750 kb on + strand at 297.751 kb on - strand at 297.751 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB remove 294,835 - ABZR87_RS17525 0.82 +0.5 294,835 - ABZR87_RS17525 0.82 -0.9 295,038 + -0.3 295,064 + +0.3 295,064 + -0.8 295,066 + -0.0 295,761 + +0.8 295,828 + -0.5 295,828 + -0.4 295,828 + -0.3 295,829 - +0.8 295,829 - +0.1 295,829 - -0.8 295,829 - +0.2 296,002 - ABZR87_RS17535 0.18 +1.2 296,342 + ABZR87_RS17535 0.54 +1.3 296,367 + ABZR87_RS17535 0.56 +0.4 296,368 - ABZR87_RS17535 0.57 -0.5 296,368 - ABZR87_RS17535 0.57 -0.3 296,419 - ABZR87_RS17535 0.62 +0.1 296,655 - ABZR87_RS17535 0.87 -2.4 296,707 - +0.1 296,707 - -0.3 296,966 + ABZR87_RS17540 0.19 -0.7 296,966 + ABZR87_RS17540 0.19 -2.3 296,966 + ABZR87_RS17540 0.19 +0.0 296,967 - ABZR87_RS17540 0.19 -0.0 296,967 - ABZR87_RS17540 0.19 +0.0 296,967 - ABZR87_RS17540 0.19 -0.3 296,967 - ABZR87_RS17540 0.19 +1.2 297,038 + ABZR87_RS17540 0.26 -1.3 297,150 - ABZR87_RS17540 0.38 +0.4 297,150 - ABZR87_RS17540 0.38 +0.5 297,221 + ABZR87_RS17540 0.46 -0.2 297,222 - ABZR87_RS17540 0.46 +0.8 297,222 - ABZR87_RS17540 0.46 +0.1 297,222 - ABZR87_RS17540 0.46 +0.1 297,365 + ABZR87_RS17540 0.61 -0.0 297,366 - ABZR87_RS17540 0.61 -1.6 297,366 - ABZR87_RS17540 0.61 +0.3 297,449 - ABZR87_RS17540 0.70 -0.7 297,455 + ABZR87_RS17540 0.70 -0.1 297,540 + ABZR87_RS17540 0.79 -1.5 297,541 - ABZR87_RS17540 0.79 +1.0 297,750 + +0.1 297,751 - +0.2 297,751 - +0.4
Or see this region's nucleotide sequence