Experiment: rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17375 and ABZR87_RS17380 are separated by 289 nucleotides ABZR87_RS17380 and ABZR87_RS17385 are separated by 53 nucleotides
ABZR87_RS17375: ABZR87_RS17375 - ABC transporter ATP-binding protein, at 252,490 to 254,796
_RS17375
ABZR87_RS17380: ABZR87_RS17380 - cyanophycin synthetase, at 255,086 to 257,746
_RS17380
ABZR87_RS17385: ABZR87_RS17385 - cyanophycin synthetase, at 257,800 to 260,367
_RS17385
Position (kb) 255
256
257
258 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 254.105 kb on + strand, within ABZR87_RS17375 at 254.105 kb on + strand, within ABZR87_RS17375 at 254.123 kb on + strand, within ABZR87_RS17375 at 254.124 kb on - strand, within ABZR87_RS17375 at 254.187 kb on - strand, within ABZR87_RS17375 at 254.534 kb on - strand, within ABZR87_RS17375 at 254.534 kb on - strand, within ABZR87_RS17375 at 254.634 kb on + strand at 254.635 kb on - strand at 254.656 kb on - strand at 254.869 kb on + strand at 254.869 kb on + strand at 254.869 kb on + strand at 254.869 kb on + strand at 254.870 kb on - strand at 254.870 kb on - strand at 254.870 kb on - strand at 254.870 kb on - strand at 254.870 kb on - strand at 254.928 kb on + strand at 254.928 kb on + strand at 254.928 kb on + strand at 254.928 kb on + strand at 254.928 kb on + strand at 254.929 kb on - strand at 254.929 kb on - strand at 254.929 kb on - strand at 254.930 kb on + strand at 254.930 kb on + strand at 254.930 kb on + strand at 254.930 kb on + strand at 254.930 kb on + strand at 254.930 kb on + strand at 254.931 kb on - strand at 254.931 kb on - strand at 254.931 kb on - strand at 254.931 kb on - strand at 254.931 kb on - strand at 254.931 kb on - strand at 254.931 kb on - strand at 254.931 kb on - strand at 254.931 kb on - strand at 254.934 kb on + strand at 254.934 kb on + strand at 254.934 kb on + strand at 254.935 kb on - strand at 254.935 kb on - strand at 254.935 kb on - strand at 254.935 kb on - strand at 255.008 kb on + strand at 255.008 kb on + strand at 255.008 kb on + strand at 255.008 kb on + strand at 255.009 kb on - strand at 255.009 kb on - strand at 255.014 kb on + strand at 255.014 kb on + strand at 255.056 kb on + strand at 255.057 kb on - strand at 255.057 kb on - strand at 255.084 kb on - strand at 255.139 kb on + strand at 255.139 kb on + strand at 255.140 kb on - strand at 255.140 kb on - strand at 255.149 kb on + strand at 255.149 kb on + strand at 255.149 kb on + strand at 255.149 kb on + strand at 255.150 kb on - strand at 255.150 kb on - strand at 255.150 kb on - strand at 255.224 kb on + strand at 255.224 kb on + strand at 255.224 kb on + strand at 255.224 kb on + strand at 255.225 kb on - strand at 255.225 kb on - strand at 255.225 kb on - strand at 255.225 kb on - strand at 255.225 kb on - strand at 255.225 kb on - strand at 255.225 kb on - strand at 255.422 kb on + strand, within ABZR87_RS17380 at 255.422 kb on + strand, within ABZR87_RS17380 at 255.422 kb on + strand, within ABZR87_RS17380 at 255.422 kb on + strand, within ABZR87_RS17380 at 255.423 kb on - strand, within ABZR87_RS17380 at 255.423 kb on - strand, within ABZR87_RS17380 at 255.518 kb on + strand, within ABZR87_RS17380 at 255.519 kb on - strand, within ABZR87_RS17380 at 255.869 kb on + strand, within ABZR87_RS17380 at 255.935 kb on + strand, within ABZR87_RS17380 at 256.203 kb on - strand, within ABZR87_RS17380 at 256.656 kb on - strand, within ABZR87_RS17380 at 256.800 kb on - strand, within ABZR87_RS17380 at 256.862 kb on + strand, within ABZR87_RS17380 at 256.863 kb on - strand, within ABZR87_RS17380 at 256.863 kb on - strand, within ABZR87_RS17380 at 256.886 kb on + strand, within ABZR87_RS17380 at 256.886 kb on + strand, within ABZR87_RS17380 at 256.886 kb on + strand, within ABZR87_RS17380 at 256.886 kb on + strand, within ABZR87_RS17380 at 256.886 kb on + strand, within ABZR87_RS17380 at 256.886 kb on + strand, within ABZR87_RS17380 at 256.886 kb on + strand, within ABZR87_RS17380 at 256.887 kb on - strand, within ABZR87_RS17380 at 256.887 kb on - strand, within ABZR87_RS17380 at 256.887 kb on - strand, within ABZR87_RS17380 at 256.887 kb on - strand, within ABZR87_RS17380 at 256.887 kb on - strand, within ABZR87_RS17380 at 256.887 kb on - strand, within ABZR87_RS17380 at 256.888 kb on + strand, within ABZR87_RS17380 at 256.889 kb on - strand, within ABZR87_RS17380 at 256.889 kb on - strand, within ABZR87_RS17380 at 257.032 kb on + strand, within ABZR87_RS17380 at 257.032 kb on + strand, within ABZR87_RS17380 at 257.147 kb on + strand, within ABZR87_RS17380 at 257.147 kb on + strand, within ABZR87_RS17380 at 257.147 kb on + strand, within ABZR87_RS17380 at 257.403 kb on + strand, within ABZR87_RS17380 at 257.403 kb on + strand, within ABZR87_RS17380 at 257.403 kb on + strand, within ABZR87_RS17380 at 257.404 kb on - strand, within ABZR87_RS17380 at 257.404 kb on - strand, within ABZR87_RS17380 at 257.487 kb on + strand at 257.710 kb on - strand at 257.710 kb on - strand at 257.795 kb on - strand at 257.854 kb on - strand at 258.091 kb on + strand, within ABZR87_RS17385 at 258.091 kb on + strand, within ABZR87_RS17385 at 258.092 kb on - strand, within ABZR87_RS17385 at 258.109 kb on + strand, within ABZR87_RS17385 at 258.109 kb on + strand, within ABZR87_RS17385 at 258.109 kb on + strand, within ABZR87_RS17385 at 258.110 kb on - strand, within ABZR87_RS17385 at 258.604 kb on + strand, within ABZR87_RS17385 at 258.605 kb on - strand, within ABZR87_RS17385 at 258.605 kb on - strand, within ABZR87_RS17385 at 258.605 kb on - strand, within ABZR87_RS17385 at 258.605 kb on - strand, within ABZR87_RS17385 at 258.605 kb on - strand, within ABZR87_RS17385 at 258.649 kb on + strand, within ABZR87_RS17385 at 258.649 kb on + strand, within ABZR87_RS17385 at 258.649 kb on + strand, within ABZR87_RS17385 at 258.650 kb on - strand, within ABZR87_RS17385
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB remove 254,105 + ABZR87_RS17375 0.70 +0.3 254,105 + ABZR87_RS17375 0.70 +1.7 254,123 + ABZR87_RS17375 0.71 +0.2 254,124 - ABZR87_RS17375 0.71 +1.0 254,187 - ABZR87_RS17375 0.74 -2.7 254,534 - ABZR87_RS17375 0.89 +0.2 254,534 - ABZR87_RS17375 0.89 -0.9 254,634 + -1.4 254,635 - +0.5 254,656 - +0.9 254,869 + +0.6 254,869 + +1.1 254,869 + -0.2 254,869 + -0.3 254,870 - -1.0 254,870 - +1.3 254,870 - -1.6 254,870 - -0.7 254,870 - -0.1 254,928 + +0.4 254,928 + +0.3 254,928 + +1.7 254,928 + +0.0 254,928 + +0.0 254,929 - -0.5 254,929 - +1.1 254,929 - +0.3 254,930 + -1.2 254,930 + +0.7 254,930 + +0.2 254,930 + -2.6 254,930 + -1.1 254,930 + -1.7 254,931 - +1.3 254,931 - +0.7 254,931 - -0.6 254,931 - +3.5 254,931 - +0.6 254,931 - -0.9 254,931 - -0.7 254,931 - +0.4 254,931 - -1.9 254,934 + -2.2 254,934 + -0.6 254,934 + +0.5 254,935 - +0.5 254,935 - -0.7 254,935 - -0.4 254,935 - -0.8 255,008 + +0.6 255,008 + +1.5 255,008 + +0.5 255,008 + -1.5 255,009 - -1.2 255,009 - +1.2 255,014 + +0.0 255,014 + -0.4 255,056 + +0.0 255,057 - +0.0 255,057 - +0.9 255,084 - -0.3 255,139 + +0.9 255,139 + -0.2 255,140 - +0.3 255,140 - -0.3 255,149 + +1.8 255,149 + +0.5 255,149 + +0.1 255,149 + -0.3 255,150 - +0.8 255,150 - +0.1 255,150 - -1.0 255,224 + -0.5 255,224 + +0.4 255,224 + +0.3 255,224 + +0.2 255,225 - -0.0 255,225 - +1.1 255,225 - +0.3 255,225 - -0.0 255,225 - -0.6 255,225 - +0.3 255,225 - +0.2 255,422 + ABZR87_RS17380 0.13 +1.7 255,422 + ABZR87_RS17380 0.13 -1.2 255,422 + ABZR87_RS17380 0.13 -1.8 255,422 + ABZR87_RS17380 0.13 -2.4 255,423 - ABZR87_RS17380 0.13 +0.2 255,423 - ABZR87_RS17380 0.13 +0.8 255,518 + ABZR87_RS17380 0.16 -0.0 255,519 - ABZR87_RS17380 0.16 -1.3 255,869 + ABZR87_RS17380 0.29 -0.1 255,935 + ABZR87_RS17380 0.32 -0.5 256,203 - ABZR87_RS17380 0.42 -0.7 256,656 - ABZR87_RS17380 0.59 +0.7 256,800 - ABZR87_RS17380 0.64 -1.9 256,862 + ABZR87_RS17380 0.67 -0.1 256,863 - ABZR87_RS17380 0.67 -2.0 256,863 - ABZR87_RS17380 0.67 -0.1 256,886 + ABZR87_RS17380 0.68 +0.1 256,886 + ABZR87_RS17380 0.68 -0.0 256,886 + ABZR87_RS17380 0.68 -1.6 256,886 + ABZR87_RS17380 0.68 -1.0 256,886 + ABZR87_RS17380 0.68 +1.1 256,886 + ABZR87_RS17380 0.68 -0.2 256,886 + ABZR87_RS17380 0.68 -0.4 256,887 - ABZR87_RS17380 0.68 -1.1 256,887 - ABZR87_RS17380 0.68 +0.7 256,887 - ABZR87_RS17380 0.68 +0.7 256,887 - ABZR87_RS17380 0.68 -1.3 256,887 - ABZR87_RS17380 0.68 -0.5 256,887 - ABZR87_RS17380 0.68 -1.2 256,888 + ABZR87_RS17380 0.68 +0.3 256,889 - ABZR87_RS17380 0.68 -0.8 256,889 - ABZR87_RS17380 0.68 -1.6 257,032 + ABZR87_RS17380 0.73 -1.2 257,032 + ABZR87_RS17380 0.73 -0.3 257,147 + ABZR87_RS17380 0.77 +0.1 257,147 + ABZR87_RS17380 0.77 -0.1 257,147 + ABZR87_RS17380 0.77 -2.0 257,403 + ABZR87_RS17380 0.87 -0.2 257,403 + ABZR87_RS17380 0.87 +0.5 257,403 + ABZR87_RS17380 0.87 -0.2 257,404 - ABZR87_RS17380 0.87 -1.1 257,404 - ABZR87_RS17380 0.87 -1.6 257,487 + +2.7 257,710 - -0.2 257,710 - -0.7 257,795 - -0.2 257,854 - -1.0 258,091 + ABZR87_RS17385 0.11 +0.1 258,091 + ABZR87_RS17385 0.11 +1.6 258,092 - ABZR87_RS17385 0.11 +0.3 258,109 + ABZR87_RS17385 0.12 +0.1 258,109 + ABZR87_RS17385 0.12 -0.3 258,109 + ABZR87_RS17385 0.12 -2.3 258,110 - ABZR87_RS17385 0.12 -1.8 258,604 + ABZR87_RS17385 0.31 -0.1 258,605 - ABZR87_RS17385 0.31 +0.3 258,605 - ABZR87_RS17385 0.31 +0.4 258,605 - ABZR87_RS17385 0.31 +0.5 258,605 - ABZR87_RS17385 0.31 -1.0 258,605 - ABZR87_RS17385 0.31 -0.1 258,649 + ABZR87_RS17385 0.33 +0.9 258,649 + ABZR87_RS17385 0.33 +0.4 258,649 + ABZR87_RS17385 0.33 +1.3 258,650 - ABZR87_RS17385 0.33 +0.5
Or see this region's nucleotide sequence